#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 15, 2026; 9:42 GMT

TreeBASE (cc) 1994-2008

Study reference:
Borovicka J., Miroslav O., Stribrny J., Noordeloos M.E., Parra sanchez L.A., & Gryndler
M. 2014. Phylogenetic and chemical studies in the potential psychotropic
species complex of Psilocybe atrobrunnea with taxonomic and nomenclatoral notes.
Persoonia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S15446]

[ The following blocks are input data for analysis step 14672 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep14672;
        DIMENSIONS NTAX=17;
        TAXLABELS
            Hypholoma_marginatum_P33
            Leratiomyces_laetissimus_P27
            Leratiomyces_squamosus_P38
            Psilocybe_allenii_HE994457
            Psilocybe_atrobrunnea_P32
            Psilocybe_atrobrunnea_P36
            Psilocybe_atrobrunnea_P54
            Psilocybe_azurescens_GU565159
            Psilocybe_cubensis_P30
            Psilocybe_cyanescens_GU565158
            Psilocybe_medullosa_P11
            Psilocybe_medullosa_P37
            Psilocybe_pelliculosa_P19
            Psilocybe_semilanceata_P31
            Psilocybe_serbica_GU565165
            Psilocybe_silvatica_P24
            Psilocybe_weraroa_P34
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M21047]

	TITLE Psilocybe_EF1a;
	LINK TAXA = TaxaForAnalysisStep14672;
	DIMENSIONS NCHAR=477;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= -;

MATRIX
[                                         10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480         ]
[                                          .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         ]
Hypholoma_marginatum_P33          GCTGATTGCGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGTAATTTACTCATCTCACGTAAAACATGTTAACTTTTTCAAGTGGTCCGAGGATCGTTTCAACGAAATCATCAAGGAGACTTCCGGCTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTCGTCCCCATCTCTGGATGGCATGGAGACAACATGTTGGAGGAGTCCCCCAAGTACGTTATCATCGTTGATCTCGTGTCTCACCTTCATTTTTAGCATGCCCTGGTACAAGGGTTGGTCGCGAGAGACCAAGTCTGGCCTCGTCAAGGGCAAGACTCTCCTCGATGCCATTGATGCCATTGAGCCCCCCGTCCGTCC
Leratiomyces_laetissimus_P27      GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGCATGTGATTTCATTCTGTTAAAATTTGTTAACATTTTCAAGTGGTCTGAGGATCGTTTCAACGAAATCATCAAGGAGACTTCAGGTTTCATCAAGAAGGTCGGATACAACCCCAAGACCGTCGCCTTCGTTCCCATCTCCGGATGGCACGGAGACAACATGTTGGAGGA{AG}TCCAC{CT}AAGTAAGTCACTGTCCTTAATTGCATGT{CT}TGATTATCGTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTTGTCAAGGGTAAGACCCTCCTCGACGCCATCGACGCCATCGAACCCCCCGTCCGTCC
Leratiomyces_squamosus_P38        GCTGATTGTGCCATTCTCATCATCGCTGGTGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGATACCACCAAGGCATGTATTTCCATTTTGATAAAATTTGTTAACCTTTTCAAGTGGTCCGAGGATCGTTTCAACGAAATCATCAAGGAAACTTCCGGTTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATCTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCTCCCAAGTAAGTTTCCATCTAACAGTGCGTATCTGATTATCGCTTCTAGCATGCCCTGGTTCAAGGGTTGGTCGCGTGAGACCAAGGCCGGTGTTGTCAAGGGAAAGACCCTCCTCGACGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_allenii_HE994457        GCTGATTGTGCTATCCTCATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTAT{CT}TCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGC{CT}TTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTC-{CG}AAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTATG{AG}ATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_atrobrunnea_P32         GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCACCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTTTTTCGATCCCTGATTTTTAATCTCATTTTTTAGTGGTCCGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTG{AG}GTAACCGTCATGTTTGTTCTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCCATCGAACCCCCCGTCCGTCC
Psilocybe_atrobrunnea_P36         GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCACCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAAGTAATTTTTTTTCGATCGCTGATTTTTAATCTCATTTTTTAGTGGTCCGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCTTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTAACCGTCATGTTTGTTCTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCTATCGAGCCCCCCGTCCGTCC
Psilocybe_atrobrunnea_P54         GCCGATTGTGCCATTCTCATCATTGCCGGTGGAACTGGTGAGTTCGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTTGCCTTCACCCTTGGTGTCCGACAACTTATTGTCGCCGTCAACAAGATGGACACCACCAATTTCGATCCCTTTTTTTTTCAAATCTTCAATTTATTTTTTTAGTGGTCCGAGGATCGTTTCAATGAAATTGTCAAGGAAACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTAACCGTCATGTTTGTCTTGCTTTCCTTCTCTTCTTAGCATGCCCTGGTTCAAGGGCTGGACTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCTATCGATGCTATCGAACCCCCCGTCCGTCC
Psilocybe_azurescens_GU565159     GCTGATTGTGCTATCCT{CT}ATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTCCGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTATG{AG}ATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_cubensis_P30            GCTGATTGTGCTATCCTCATCATCGCTGGTGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCCCTTCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCTGTCAACAAGATGGACACCACCAAGGTAAATTTTCCCCAAACTTATCCTTTAATTCTTATTTCGCAGTGGTCCGAGGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTTGCCTTCGTCCCCATCTCTGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTACGAGACTGTCTTGTTTTTTCTCTT-CCCTTCTTTTTTTAGCATGCCCTGGTACAAGGGTTGGTCTCGTGAGACCAAGGCTGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_cyanescens_GU565158     GCTGATTGTGCTATCCT{CT}ATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTTCTTAGTGGTCCGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTTGCCTTTGTTCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTATG{AG}ATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTCGTCAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCC{CT}GTCCGTCC
Psilocybe_medullosa_P11           GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTCCGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGT{AG}AGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGCTGGACTCGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC
Psilocybe_medullosa_P37           GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAATTTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTCCGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGT{AG}AGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGCTGGACTCGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC
Psilocybe_pelliculosa_P19         GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGCCAGACTCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGCCAACTTATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAGCTTTTCTTGACTCAAAAAGTTGAATTTCATCATTAAGTGGTCCGAAGACCGTTTCAACGAAATTGTCAAGGAGACTTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACCGTCGCCTTCGTTCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTAAGCTGCGAAAAAATTTCTCATGCCTAACTTTTTTTTCCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCTGGTGTTGTCAAGGGCAAGACCCTCCTCGATGCCATTGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_semilanceata_P31        GCCGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAGTTCGAGGCTGGTATCTCAAAGGATGGCCAGACTCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAGCTTTCCCCGTGATTTAAATGTCAATTTCAAAACGGAGTGGTCCGAAGATCGTTTCAACGAAATTATCAAGGAGACTTCCAACTTCATCAAGAAGGTCGGCTACAACCCCAAGACCGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTAAGCAGCTATTTTTTTTGTCGCATCTAAATTTTCTTATCAGCATGCCCTGGTTCAAGGGTTGGACTCGTGAGACCAAGGCCGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_serbica_GU565165        GCTGATTGTGCTATCCTCATCATCGCCGGAGGAACCGGTGAGTTCGAGGCTGGTATCTCCAAGGATGGTCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTCGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTCTTCAAACCTTAAATTTTGATCTAATTTCTCAGTGGTCCGAGGATCGTTTCAACGAAATTATCAAGGAGACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAAACCGTTGCCTTCGTCCCCATCTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTACGTATTTATTTCTCATTTTCTCTTGTCTTTCCTTCTTTAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
Psilocybe_silvatica_P24           GCTGATTGTGCCATCCTCATCATCGCCGGTGGAACTGGTGAATTCGAGGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGACAACTCATTGTCGCCGTCAACAAGATGGACACCACCAAGGTAAATTTCTCTATACTTTGAAATTTTATTCTCACCTTTTAGTGGTCAGAAGACCGTTTCAATGAAATCGTCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACTGTCGCCTTCGTCCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCGTCAAGTGAGTCACCATCGTTTTTACTCTAATTTTCTCCTTCTTTCAGCATGCCCTGGTTCAAGGGTTGGACTCGTGAGACCAAGGCTGGTGTCGTCAAGGGTAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGCCC
Psilocybe_weraroa_P34             GCTGATTGTGCTATCCTTATCATCGCTGGAGGAACCGGTGAGTTTGAAGCTGGTATCTCCAAGGATGGCCAGACCCGCGAGCACGCTCTCCTCGCCTTCACCCTCGGTGTCCGTCAGCTCATCGTTGCCGTCAACAAGATGGACACCACCAAGGTAAATTTTAACGAAATCTTACTTTTTAAACTCATTT{CT}TTAGTGGTCCGAAGATCGTTTCAACGAAATTATCAAGGAAACCTCCAACTTCATCAAGAAGGTCGGTTACAACCCCAAGACAGTTGCCTTTGTTCCCATTTCCGGATGGCACGGAGACAACATGTTGGAGGAGTCCACCAAGTATGGATTTCACTTTCCTTTTCTCTTCTCTTCCTTTCTTCAGCATGCCCTGGTTCAAGGGTTGGTCTCGTGAGACCAAGGCCGGTGTCGTTAAGGGCAAGACCCTCCTCGATGCCATCGATGCCATCGAGCCCCCCGTCCGTCC
;
END;

[ The following blocks are output data for analysis step 14672 ]
BEGIN TREES;
      TITLE Psilocybe_EF1a;
      LINK TAXA = TaxaForAnalysisStep14672;
      TREE EFml1 = [&R] (Hypholoma_marginatum_P33:0.212645,((((Psilocybe_serbica_GU565165:0.074399,(Psilocybe_cubensis_P30:0.132924,(Psilocybe_allenii_HE994457:0.0,(Psilocybe_azurescens_GU565159:0.0,(Psilocybe_cyanescens_GU565158:0.0,Psilocybe_weraroa_P34:0.012584)479:0.0)516:0.0)1000:0.115665)490:0.024252)922:0.108161,((Psilocybe_atrobrunnea_P32:0.0,(Psilocybe_atrobrunnea_P36:0.014191,Psilocybe_atrobrunnea_P54:0.102189)565:0.008409)998:0.125696,(Psilocybe_silvatica_P24:0.008339,(Psilocybe_medullosa_P37:0.0,Psilocybe_medullosa_P11:0.0)859:0.004171)991:0.134259)779:0.042942)569:0.065921,(Psilocybe_semilanceata_P31:0.157878,Psilocybe_pelliculosa_P19:0.140896)710:0.035853)1000:0.166904,(Leratiomyces_laetissimus_P27:0.079226,Leratiomyces_squamosus_P38:0.106208)820:0.078012):0.0);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr70796]


END;