#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 05, 2024; 19:37 GMT

TreeBASE (cc) 1994-2008

Study reference:
Yurchenko E., & Wu S. 2014. Fibrodontia alba sp. nov. (Basidiomycota) from Taiwan.
Mycoscience, 55(5): 336-343.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S14410]

[ The following blocks are input data for analysis step 14986 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep14986;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Brevicellicium_olivascens_JN649327
            Fibrodontia_alba_JQ612714
            Fibrodontia_alba_KC928275
            Fibrodontia_brevidens_KC928277
            Fibrodontia_gossypina_AY646100
            Hyphodontia_floccosa_DQ873618
            Hyphodontia_subalutacea_DQ340362
            Porpomyces_mucidus_AF347093
            Sistotremastrum_suecicum_EU118667
            Subulicystidium_longisporum_AJ406422
            Trechispora_confinis_AY586719
            Trechispora_farinacea_EU909231
            Trechispora_nivea_AY586720
            Tubulicium_vermiferum_AY463477
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M17632]

	TITLE Fibrodontia_alba_sp._nov._28S;
	LINK TAXA = TaxaForAnalysisStep14986;
	DIMENSIONS NCHAR=594;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590    ]
[                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Brevicellicium_olivascens_JN649327       TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTGAAATCTGACGGTTCC--GCCGTCCGAGTTGTAATCTGGAGAAGTGCTTTCCGCGCTGGACCGTGTACAATCTCTTGGAATAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTGCCAGGGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTGAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAATTCAGCCTTGCTTCTGCTTGGTGCACTTTCCGGTCTGACGGGTCAGCATCGGTTTCTG-GGCCGGACAAACGCGCGGGGAAGGTGGCACCT-CCGGGTGTGTTATAGCCCTGCGTTGCACAACGGCTCGAGGGACCGAGGAAAACCG------GCTT-------------------------------ACCCCGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Fibrodontia_alba_JQ612714                TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCT--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCCGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCGGTT-TCGGCCGTGTTATAGCCTCCCGTTGTAC-GCGCCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Fibrodontia_alba_KC928275                TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCT--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCCGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCGGTT-TCGGCCGTGTTATAGCCTCCCGTTGTAC-GCGCCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Fibrodontia_brevidens_KC928277           TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGCTCC--GCCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGTCGGGACTCAGCTCCGC-TCTGCGGGGTGCACTTCCCGA-CCGACGGGTCAGCATCGGTTTTCGGGGGCGGACAAAGGCGGGAGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCTCCCGTTGTAC-GCGTCCCCGGGGACCGAGGAATCCGG---CGCTCG--------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Fibrodontia_gossypina_AY646100           TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCTTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGGACTCAGCTCCGC-TCTGCGGGGTGCACTTCCCGG-CCGACGGGTCAGCATCGGTTTTGGGGGACGGACAAAGGCGGGAGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCTCCCGTTGTAC-GCGTCCTCCGGGACCGAGGAATCCGG---CGCTCGC-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Hyphodontia_floccosa_DQ873618            TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTAAAATCTGGCGGTCTCTGGCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGCGTCGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCCATGACACGGACAGCCGGTGCTTGTGATACGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCGTCCGGGACTCAGCCTTGCTCTTGCTTGGTGTACTTCCC-GTTCGACGGGTCAACATCGATTTTGGCCGGCGGATAAAGGCGGGGGGAATGTGGCACCT-TCGGGTGTGTTATAGCCCTCTGTCGCAT-GCGTCGACTGGGATCGAGGACCGCAG---CGCGCCCTCGTGGCCGGAAGGCAAGCCTTCACGTTACGCGCTTAGGATGTTG-GCATAATGGCTTTAAGCGACC
Hyphodontia_subalutacea_DQ340362         TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTAAAATCTGGCGGTCTCCGGCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGCGTCGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCCATGACACGGACTGCCGATGCTTGTGATACGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTTGTCCGGGACTCAGCCTTGCTTTTGCTTGGTGTACTTCCC-GTTCGACGGGTCAACATCGATTTTGACCGGCGGATAAAGGCGGGGGGAATGTGGCACCT-TCGGGTGTGTTATAGCCCTCTGTTGCAT-GCGTCGGTTGGGATCGAGGACCGCAG---CGCGCCCTCGTGGCCGGGAGGTACGCCTCCACGTTACGCGCTTAGGATGTGGCATAAGCTAGCTTTAAGCGACC
Porpomyces_mucidus_AF347093              TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGTAATCTGGCGGTTCT--GCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTCTGACACGGACTGCCGGTGCCTGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTTCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTGTGACGGGCCAGCATCGGCTTCGCGGGGCGGACAAAGGGGAGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCTCTCTGCAC-GCGTCCCGCGGGGCCGAGGAATCCGG---CGCTTG--------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Sistotremastrum_suecicum_EU118667        TAGAACGGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGACGGTCTTTGGTCGTCCGAGTTGTAGTCTGGAGAAGTGCTTTCTGTGCTGGACCGTGTACAATCTCTTGGAACAGAGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTACCAGTGCATATGATGCGCTCTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATACAGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGTGTCTGCTGGGACTCAGCCTGGCTTTTGCCTGGTGCACTTCCCTG-TTGACAGGCCAACATCAATTTTGATCGGCAGACAAAGGCTGAGGAAATGTGGCAGCC-TCGGCTGTGTTATAGTCCTCAGTTGTAC-ATGTCGATTGGGATTGAGGAATCCGGACACGCAAGT-------------------------------GTTGTGGGATGTTG-GCGTAATGGCTTTAAACGACC
Subulicystidium_longisporum_AJ406422     TAGAACTGCGAGTGAAGCGGGAAGAGCTCAAATTTGAAATCTGGCGGTTCT--GCCGTCCGAGTTGTAATCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCCTGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGGAGTCAGTCGCGTCTTCCGGAACTCAGCCTTGCTTCTGCTAGGTGCACTTTCCGGTTCGACGGGTCAGCATCGGCTTTGGGAGGCGGACAAAGGCGCGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCGCGTTGTAC-GCGTCTCCCGGGACCGAGGAATCCGG---CGCTCGT-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Trechispora_confinis_AY586719            TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGTCCGAGTTGTATTCTGGAGAAGCGTCTTCCGCGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCACAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCATGCGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTCGAGCGGCGGACACTGGCGAGGGGAAGGTGGCGGCT-CCGGCCGCGTTATAGCCCCACGTCGCGA-ACGTCGCCCGGGACCGAGGAATCCGG---CGCA----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAACGACC
Trechispora_farinacea_EU909231           TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCCCC--GCCGTCCGAGTTGTATTCTGGAGAAGCGTCTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGACACGGACCCCCGGTGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTCATGCTTGGTGCACTTTCCGGTCTGACGGGCCAGCATCGGTTTTGGGCGGCGGACACTGGCGAGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCCCGTCGCAA-ACGTCGTCTGGGACCGAGGAATCCGG---CGCA----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
Trechispora_nivea_AY586720               TAGAACTGCGAGTGAAGCGGGAAAAGCTCAAATTTGAAATCTGGCGGCTCC--GTCGCCCGAGTTGTATTCTGGAGAAGCGTTTTCCGTGCCGGACCGTGTACAATCCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTCTTTGACACGGACTCCCGGTGCATGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAACCAGTACGTGAAATTGTTGAAAGGGAAACGCTTGAAGTCAGTCGCGTCTGCCGGAACTCAGCCTTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTTGGGCGGCGGACACTGGCGCGGGGAAGGTGGCAGCT-CCGGCTGTGTTATAGCCCCGCGTCGCAA-ACGCCGTCCGGGACCGAGGAATCCGG---CGCG----------------------------------AGCCTGGGATGCTG-GCGTAATGGCTTTAAACGACC
Tubulicium_vermiferum_AY463477           TAGAACTGCGAGTGAAGCGGGATGAGCTCAAATTTGAAATCTGGCGGCTCC--G-CGTCCGAGTTGTAACCTGGAGAAGCGTTTTCCGTGCCGGACCGCATACAATCCTCTGGAACGGGGCGTCGTAGAGGGTGAGAATCCCGTCTTTGATGCGGACTGCCGGTGCCTGTGATGCGCTCTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCAAAACGGGTGGTGAATTCCATCTAAAGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGTGAGGGAAAGATGAAAAGCACTTTGGAAAGAGAGTAAAACAGTACGTGAAATTGTTGAAAGGGAAACGCTTGACGTCAGTCGCGTCGTCCGGAACTCAGCCCTGCTTCTGCTCGGTGCACTTTCCGGTTCGACGGGCCAGCATCGGTTTCGGTGGGCGGACAAAGGCGAGGGGAAGGTGGCAGCTCCCGGCTGTGTTATAGCC-CTCGTTGTAC-GCGTCCGCTGGGACCGAGGAATCCGG---CGCTCGT-------------------------------CGCCTGGGATGCTG-GCGTAATGGCTTTAAGCGACC
;
END;

[ The following blocks are output data for analysis step 14986 ]
BEGIN TREES;
      TITLE Fibrodontia_&_allied_fungi_LSU_Bayesian;
      LINK TAXA = TaxaForAnalysisStep14986;
      TREE con_50_majrule = [&R] (Hyphodontia_subalutacea_DQ340362:0.041303065235179,Hyphodontia_floccosa_DQ873618:0.006139697607342234,((((Fibrodontia_alba_KC928275:0.001382840756450916,Fibrodontia_alba_JQ612714:0.00142705800714703):0.02107779639726234,Fibrodontia_gossypina_AY646100:0.005618783132185626):0.00658882229084422,Fibrodontia_brevidens_KC928277:0.01471512281138465):0.03783044028536763,(Trechispora_farinacea_EU909231:0.02390699532192813,Trechispora_nivea_AY586720:0.01607382014009231,Trechispora_confinis_AY586719:0.03020556054049757):0.0258121936479896,(Subulicystidium_longisporum_AJ406422:0.01781931304430437,Porpomyces_mucidus_AF347093:0.03905583962267032):0.008986719165748705,Tubulicium_vermiferum_AY463477:0.05190429720288371,Sistotremastrum_suecicum_EU118667:0.1906410758922327,Brevicellicium_olivascens_JN649327:0.1060431766315973):0.1316899226768737);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr64544]


END;