#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 11:52 GMT TreeBASE (cc) 1994-2008 Study reference: Gostel M., Phillipson P.B., & Weeks A. 2014. Phylogenetic Reconstruction of the Myrrh Genus, Commiphora (Burseraceae), Reveals Multiple Radiations in Madagascar and Clarifies Infrageneric Relationships. Systematic Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16632] [ The following blocks are input data for analysis step 15058 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15058; DIMENSIONS NTAX=33; TAXLABELS Commiphora_aprevalii_10I2004 Commiphora_aprevalii_128 Commiphora_bardotiae_10I1101 Commiphora_bardotiae_62 Commiphora_brevicalyx_brev_10I2405 Commiphora_brevicalyx_vez_10I2009 Commiphora_capuronii_10I1504 Commiphora_capuronii_4885 Commiphora_capuronii_67 Commiphora_cf_capuronii_65 Commiphora_cf_ellipticaA_46 Commiphora_cf_ellipticaBursera_51 Commiphora_cf_marchandii_117 Commiphora_elliptica_10I0901 Commiphora_elliptica_43 Commiphora_falcata_10I2603 Commiphora_fraxinifolia_5831 Commiphora_grandifolia_10I1301 Commiphora_grandifolia_53 Commiphora_granulifera_125 Commiphora_guillauminii_100 Commiphora_lamii_10I2602_ITS12 Commiphora_lasiodisca_10I1112 Commiphora_lasiodisca_59 Commiphora_lasiodisca_84 Commiphora_marchandii_10II1504 Commiphora_marchandii_143 Commiphora_morondavensis_10II1405_ITS12 Commiphora_pterocarpa_106 Commiphora_pterocarpa_10I2811 Commiphora_sahafariensis_10I1205 Commiphora_sp_G_79 Commiphora_spnov_Bursera_82 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M25035] TITLE Com_ITS_Rhynchocarpa_Alignment; LINK TAXA = TaxaForAnalysisStep15058; DIMENSIONS NCHAR=533; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Commiphora_aprevalii_10I2004 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTCGGTTTGAGAAAACGAACAAACGACG-GGAGG-----GGTGG----CGC-GAGCTCC-CCTCCCG{CT}CC----GCGTCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGGCGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGGGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTTCATTATATC{AC}AAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_aprevalii_128 -------------------------GTAGGTGAACCTAGCGGAAGGATCATTGTCGAAATCTGCC{CT}GCCAGTAGAACGATCCGCGAACCT-GTTAGTTTGAGAAAACGAACAAATGACG-AGAGG-----GG{CT}GG----CGC-GAGCTCC-CCTCCCATCC----GCGTCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCACAGGCATCAGCCCGTGCCC----C{CT}GCGGCGCCACAACGAA--CCCGGCGCGGACCATGCCAAGG-AAGCTATAATG---GGAGAGCCTGTCGAGCGT--CCATGTCCC?GAGAC--GGTGTGCGTGCAATC{CG}ACGG-??CCTTCTTTGAT--TATCCAAAACGACTCTCGG{CT}AA{CT}AGATATCTAGGCTCT{CT}GTATCGATGAAGAACGTAGC{AG}AAATGCGATACTTGGTGTGAATT{AG}CAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTA--------------------------------------- Commiphora_bardotiae_10I1101 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTTGGTTTGAGAAAACGAACAGACGACG-GGAGG-----GGTGG----C{GT}C-GAGCTCC-CCTCCCGTCC----GCGTAGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGACGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGATT-TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCG{CT}{AT}TCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_bardotiae_62 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAA{AC}CTGCAC---AGCAGAACGACCCGCGAACAC------GTTACAACACCGGGTGAGGGACA-AAGGG-----TG-------CAT-AAGCTCC-CC------------AAGTCGCAAGCCCATGG--TCGGGGACCGCC--------------------CTGGCGTGTTTCC----{CT}GTCCGAACAACGACCC---CCCGGCGCGGAATGCGCCAAGG-AAATCA-AA{CT}{CT}---GAATTGC-------------ACGCGTCCC----------CCCGTTTGCGGGCGGCG{AG}AAGCGTCTTTCTA---AAACACAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGTCGAGGGCACGTCTGCCTG---------- Commiphora_brevicalyx_brev_10I2405 -----------------------------------CT-GCGG-AGGATCATTGTCGAGACCTGCACGCCAGCAGAACGACCCGCGAACCC-GTTAGTTCGAGAGAACGAACAGACGGCG-GGAGG-----GGCAG----CGC-GAGCTCC-CC{GT}CCCGCCC----GCGTCGCG{GT}G-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGGCGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCGCGCCCCGGAGAC--GGTGCGCGTGCGA{CT}CGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_brevicalyx_vez_10I2009 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTCAGTTTGAGAAAACGAAC{AG}AACGACG-GGAGG-----GGCAG----CGC-GAGCTCC-CCGCCCGTCC----GCGTCG{CG}GGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCG{CT}GCCC----CCGCGGCGCCACAACGAA--CCCGGCGCGGACCGCGCCA{AG}G?-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGCGCGCGTGCGATCGGCGG-CGCCTTCTTC{GT}AT--CAT{AC}CA{AG}AACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAAT?C-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGC{AC}{AC}GTCTGCCTGGGTGTCACGC Commiphora_capuronii_10I1504 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTT{AG}GTTTGAGAAAACGAACAAACGAC{AG}-GGAGG-----GGTGG----CGC-GAGCTCC-CCTCCCGTCC----GCGTCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCTCGGCATCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_capuronii_4885 ---------------------------------------------------------------------------------------------------------------AAACGACG-GGAGG-----GGTGG----CGC-GAGCTCC-CCTCCCGTCC----GCGTCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCTCGGCATCACAACGAA--CCCGGCGCGG{AT}CCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCG{AT}{AC}{AG}A{AG}?GT--CCACGCCCCGGAGAC--G{AG}{AT}{AG}{AC}GCGTG{CT}GA{CT}?{AG}GCG{AG}-CGCCTT?TT?{AG}AT--TAT{CT}CAAAACGACT{AC}TCGGCAACGGATAT{AC}TAGGCTCTCGCAT{CG}GATGAAGAA?GTAG?GAAATGC{AG}ATAC?TG{AG}TGT{GT}AATT{AG}CAGAAT-------------------------------------------------------------------------------- Commiphora_capuronii_67 -------------AACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGGACCTTACAA---AAGTGAAAAACTAGCGAACTC-ATTTGT-----------------------GAACG-----GGC------CTTCAGGCTTG-TCGCCCCC------GGTTCGCTGG-----GA-----------------------GCCTTTGGCTCTCGGTTA----------TGCCGACACA{AG}CAAACAA--AT{CG}{CG}GCGCAG{AC}{AG}CGCGCC?AGTACTACCGGAATGAATGGAATGCCTTCTC{AG}------CGATGTATCGCATGCCTGGCGTGCGTGAAGTGTGGGAGTATCATTGACATT{AC}GAATAAAAAATGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCAAACTGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTTTTTGAACGCAAG{CT}TGCGC------------------------------------------- Commiphora_cf_capuronii_65 ?GGAGAAGTTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGGACCTTACAA---AAGTG{AC}AAAACTAGCGAACTC-ATTTGT-----------------------GAACG-----GGC------CTTCAGGCTTG-TCGCCCTC------GGT{CT}C{AG}CTGG-----G{AT}-----------------------GCCTTTGGCTCTCGGTTA----------TGC{CT}GACACAACAAACAA--ATCGGCGCAG{AC}ACGCGCCAAGTACTACCGGAATGAATGGAATGCCTTCTCA------CGATGTATCGCATGCCTGGCGTGCGTGAAGTGTGGGAGTATCATTGACATTCGAATAAAAAATGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCAAACTGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCAAAGTCGCTAGGCTGAGGGCACGTCTG-------------- Commiphora_cf_ellipticaA_46 -AGGAGAAGTCGTAACAAAGTTTCTGTAGGTGAACCT-GCGGAAGAATCATTGTTGAAACCTGCCCGTCA{AG}CAAAATGACCCGCGAACCC-GTTAGTTTGAGAAAATGAA{CT}GAACGACG-GGAGG-----GGCAG----CGC-AAGCTCC---------------------------------------------------------------------------------------------ACAACGAA--CCCGACGCGGACCGTGCCAAGG-AAGCCATAACT---GGAGAGCCCGTTGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTACGATTGGTGG-CGCCTTCTTTGAT--TATCCAAAATGACT{CT}TCGGCAATGGATATCTAGGCTCTCGTATCGATAAAGAACGTAGCGAAATGCAATACTTGGTGTGAACTGCAGAATCC-CGTGAACCATC?AGTCTTTGAACGCAAGTTGCACCCTAAGCCTTTA------------------------------- Commiphora_cf_ellipticaBursera_51 -AGGAGAAGT{CT}GTAACAAAGTTTCCGTAGGTGAACCT-GCGGAAGAATCATTGTTGAAACCTGCCCGTCAGCAAAATGACCCGCGAACCC-GTTAGTTTGAGAAAATGAACGAACGACG-GGAGG-----GGCAG----CGA-AAGCTCC---------------------------------------------------------------------------------------------ACAACGAA--CCCGACGCGGACCGTGCCAAGG-AAGCCATAACT---GGAGAGCCCGTTGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGT{AC}CGATTGGTGG-CGCCTTCTTTGAT--TATCCAAAATGACTCTCGGCAATGGATATCTAGGCTCTCGTATCGAT{AC}AAGAACGTAGCGAAATGCAATACTTGGTGTGAACTG{CT}A{GT}AATCC-CGTGAACCATC{GT}AGTCTTTGAACGCAAGTTGCACCCTAAGCCTTTAGGC-{GT}AGGGCACGTCTGC------------- Commiphora_cf_marchandii_117 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-GC{AG}GAAGGATCATTGTCGAT{AG}{CT}CT-TAC{AT}CAA{AT}CAGC{AT}CGACCGGTGAACTT-GTT{CG}TTTTGTCAAACTAGAC---------GGAGGCACACGGCGTTCGTCGCCATGGGCC-TCCCGTGCTGGGATACAACGCGGG------------------------------GCTAGCCAGTCCCG{AT}TGT{CT}TCT{AC}C-------C{AG}GCATAAAAACGAACCCCCGGCGTTG{AC}ACGC{GT}CCAAGGAACACAACTACA---TGACGTTCTCTTG{CT}---------CGTCCCGGAGAC--GGTGCATTGGCAATGAGCAA-CGCAAAATTTG----TATCCATAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATC{CT}-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCG-------------------------------------------- Commiphora_elliptica_10I0901 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTTGGTTTTACAAAA---------GACG-GGAGG-----GGTGG----CGC-GAGCTCC-CCTCCCGTCC----GCGTCGCGGG-----GGTATCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGGCGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGCGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--CATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_elliptica_43 ?GGAGAAGTTCGTAACAAAGTTTCCGTAGGTGAACCT-GCGGAAGAATCATTGTTGAAACCTGCCCGTCAGTAAAATGACCCGCGAACCC-GTTAGTTTGAGAAAATGAACAAACAACG-GGAGG-----GGCAG----CGC-AAGCTCC---------------------------------------------------------------------------------------------ACAACGAA--CCCGACGCGGACCGTGCCAAGG-AAGCCATAACT---GGAGAGCCCGTTGAGCGT--CCACGCCCCAGAGAC--GGTGCGCGTACGATTGGTGG-CGCCTTCTTTGAT--TATCCAAAATGACTCTCGGCAATGGATATCTAGGCTCTCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTTAGGCCGAGGGCACGTCTG-------------- Commiphora_falcata_10I2603 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTCAGTTCGAGAGAACGAACAAACGGCG-GGAGG-----GGTGG----CGC-GAGCTCC-CCTCCCGTCC----GCGTCGCGGG-----GC--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGGTGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--CATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_fraxinifolia_5831 -------------------------------------------------------------------------------------------------------------ACAAACGACG-GGAGG-----GGT{AG}G----CGC-GAGCTCC-CCTCCCGTCC----GCGTCGCGG{AG}-----G{AG}--TCGGAGACGT?{CT}--------CG{GT}{CG}{CG}GCGGGCG{GT}CGGCCCGTG?CC----C{CT}GCGGCGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT{CG}C{AG}CACGCC{AC}CG{CG}AGAC--GGTGCGCGTGCGGTCGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCT{AC}GCATCGATGAAGAACGTAGCGAAATGCGATAC{CT}{AT}GGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGC{CT}TGGGTGTCACGC Commiphora_grandifolia_10I1301 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTTGGTTTGAGAAAACG----AACGACG-GGAGG-----GGCAG----CGC-GAGCTCC-C{CT}GCCCGCCCACCTGCGCCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCG{AG}CC{CG}GCGCCC----CCGCGGTGCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAACCATAACG---GGAGAGCCCGTCGAGCGT--CC{AG}CGCCCCGGAGAC--GGCGCGCGTGCGATCGGCGG-CGCCTTCTTTGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_grandifolia_53 -AGGAGAAGTCATAACAAGGTTTCCGTAGGTGAACCA-GAGGAAGGATCATTGCCGAAACCTGCCCGCGAGCAGAACGACCCGCGAACTT-GTTAGTTTGAGAAAACAAACAAACAAC--GGGGG-----GACAG----CGC-GAGCTCC-CTGCCCGCCC----ACGTCGTTGG-----GG--TCAGAGGCGTCC--------CATCCACGGGCGTTAGCCCATGCCC----CCGCGGTGCTACAACGAA--CCCGACGCGGATCGTGCCAGGG-AAGCCATAACA---GGAGAGCCTGTCGAGCGT--CCACGCCCCAGAGAC--GGTGCGTGTGCGATCGGCGA-CGCTGTCTTTGAT--TATCCAAAATGACTCTCGGCAACGGATATCTAGGCTCTCGCATTGATGAAGAGGGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCTAAGCCTTTAGGCCGAGGGCACGTCT--------------- Commiphora_granulifera_125 -----------------------------------------------------------TCTG{CT}CCGCCAGTAGAACGACCCGCGAACCC-GTTAGTTTGAGAAAACGAACAAATGACA-GGAGG-----GGTGG----CAC-GAGCTCC-CCTCCCAACC----GCGTC{AG}TGGG-----GG--{AT}CG{CG}AGGCGTCC--------CGTCCACAGGCATCGG{CT}{CG}CG{CT}GCCC----C?ACGG?GCCACAACGAA--CC{CG}{CG}AC{AG}CGGAC{CT}GTGCCAAGG-{AC}AGC{CT}ATAA?G---{AG}AAGAGCCCGTCGAGCGT--CCA{CT}G{CT}C{AC}CGGAGAT--GGTGCGCGTGCGATCGGCGG-C{CG}{CT}CTTCTT{AT}GA{CT}--TATCCAA{AC}A{CT}GACTCTC{GT}GCAAC{AG}GATATCT{AC}GGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC{AC}CGTGAA{CT}CATCGAGTCTT----------------------------------------------------------- Commiphora_guillauminii_100 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTTGGTTTGAGAAAACGAACAAACGGCG-GGAGG-----G{AG}TGG----CAC-{AG}AGCTCC-CCTCCC{AG}T{CT}{CT}----GCAT{CT}GCGGA-----TG--TC{CG}GAGGCGTC{CT}--------TGTCCGCGGG{CT}GTCGGCCTGTGCCC----CCG{CT}GGCGCCACAACGAA--CCTGGTGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGTCCGT{CT}{AG}AGC{AG}T--CCAC{GT}CCTC{AG}GAGAC--G{AG}TGCGCGTG{CT}GATCGGCGG-CGCCTTCTTCGAT--TA{CT}CCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCG{CT}ATCGATGAA{AG}A{AG}CGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-{CT}GTGAACCATCGAGTCTTTGAACGCAAGTTACGTCCCAAGCCTTTAGGCCGAGGGCACGTCT--------------- Commiphora_lamii_10I2602_ITS12 -----------------------------------CT-GCGGAAGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCG{CT}GAACCC-GTTGGTTAGAGAAAACG-----ACGAC{AG}CGGA{CG}G-----GG{AC}{AG}G----CGC{AG}GA?CTC{AC}GCC{GT}CCCGCCC----GCGTCGCG{GT}C-----G{CG}--{GT}CGGAGGCG{AT}{CG}C--------CGTCCGCG{CG}?CGT{CG}GGC{CT}CGTGCCC----CCGCGGCGCC{AG}C{AG}ACGAA--CCC{AG}GCGCGGA{CG}CG{CG}GCCAAGG-AAGCCATAACG---{GT}{AG}AGAGCC{CG}GTCGAGCGT--CCACGCCCCG?AGAC--G{AG}{GT}GCGCGTGCGATCGACG{CG}-CGCCTTCTTTC{AT}T--TAT{CT}{CT}AA{AT}{AC}CGACTCT{CG}GGC?A{CG}GGATAT?T{AG}G{GT}{CT}TCTCG{CT}{AT}TCG{AT}TGAA?AACGTA?CGAAATGC{AG}AT?CTTG?TGTGA?TTG-------------------------------------------------------------------------------------- Commiphora_lasiodisca_10I1112 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCC---AGCAGAACGACCCGCGAACAT-GTGATGT------------AAAACACCG-GGCGG-----GGCTG----CGC-AGGCTCC-CCGCCCGCT-----AAGTCGCGGG-----GG--TCGGCGATGCCA--------CGTTCGCGGTAGGC-GCCCGT-CCC----CCGTGGCACAACAACGAA--CCCGGCGCGGATTGCGCCAAGGAAAACAACAACG---AGAGAGCTCGCCGGATGC-----CGCCCCGGAGAC--GGTGTGCGTGCAGGCGGCGG-TGCCTTCTTTCAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTCTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_lasiodisca_59 --------------AC{AC}A{AG}GTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAACCTGCCC---AGCAGAACGACCCGCGAACAT-GTGATGT------------AAAACA{CT}{CT}G-GGCGG-----GGCTG----CGC-AGGCTCC-CCGC{CT}{CT}GCT-----AAGTCGCGGG-----GG--TCGGCGATGCCA--------CGTTCGCGGTAGGC-GCCCGT-CCC----CCGTGGCACAACAACGAA--CCCGGCGCGGATTGCGCCAAGGAAAACAACAACG---AGAGAGCTCGCCGGATGC-----CGCCCCGGAGAC--GGTGTGCGTGCAGGCGGCGG-TGCCTTCTTTCAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGA{AT}CGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTCTAGGCC{AG}AGGGCACGTC---------------- Commiphora_lasiodisca_84 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAACCTGCCC---AGCAGAACGACCCGCGAACAT-GTGATGT------------AAAACACCG-GGCGG-----GGCTG----CGC-AGGCTCC-CCGC{CT}CGCT-----AAGTCGCGGG-----GG--TCGGCGATGCCA--------CGTTCGCGGTAGGC-GCCCGT-CCC----CCGTGGCACAACAACGAA--CCCGGCGCGGATTGCGCCAAGGAAAACAACAACG---AGAGAGCTCGCCGGATGC-----CGCCCCGGAGAC--GGTGTGCGTGCAGGCGGCGG-TGCCTTCTTTCAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGA{AT}CGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTCTAGGCC{AG}AGGGCACGTCT--------------- Commiphora_marchandii_10II1504 -----------------------------------CT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCCTGTCAGTTCGAGAGAACGAGCA{AG}ACGGCG-GGAGG-----GGCAG----CGC-AAGCTCC-CCGCCCGCCC----{CG}CGTCGCGGG-----GG--TCGGAGGCGTCC--------CGTCCGCGGGCGTCGGCC{CT}G{CT}GCCC----C{AC}GCGGCGCCACAACGAA--C{CT}CGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_marchandii_143 ?GGAGAAGTTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTCAGTTCGAGAGAACGAGCAAACGGCG-GGAGG-----GGCAG----CGC-GAGCTCG------------------------------------------------------------------------------------------------------------------------TACGG-AAGCCATAACG---GGAGAGCCCGTCGAGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTG-------------- Commiphora_morondavensis_10II1405_ITS12 --------------------------TAGGTG-ACCT-GCGG-AGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTT{AG}GTCTTACAAAA---------GACG-GGAGG-----GGTGG----C{AG}C-GAGCTCC-CCTC{CG}C{GT}{CT}CC----G{CT}GTCG{CT}G{CG}G-----{CG}G--TCGGAGGCGTCC--------C{AG}TCCGCGGGCGTCGGCCCGTGCCC----CCGCGGCGCCACAACGAA--CCCGGCGCG{CG}ACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Commiphora_pterocarpa_106 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-{AG}CGGAAGGATCATTGTC{AG}AAACCTGCCCGCCAGCAGAACGACCCGCGAACCC-GTTAGTTTGAGAAAACGAAAAAACGACG-GGAGG-----GG-GG----CGT-GAACTCC-CCTCCCGTCC----GTGTCG{CT}GAG-----GG--TCGGAGGC{AG}TCC--------CGTCAGTGGGCGTCGGCCCGTGCCC----CCCCGACGCCACAACGAA--CCGGGTGCAGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGGGCGT--CCACGCCCCGGAGAC--GGTGCGCGTGCAATCGGCGA-CGCTTTCTTTCAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCAATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTCTAGGCCGAGGGCACGTCTG-------------- Commiphora_pterocarpa_10I2811 ------------------------------------------------CATTGTCGAAACCTGC??G{AC}CAGCAGAACGACCCG{CT}GAA{CT}{CT}{CT}-GTTAGTTTGAGAAAACGAA{CG}AAACGACG-GGAGG-----{AG}GCAG----CGC-{CG}AGCTCC-CCGCCC{GT}TCC----GCGTCG{CG}G{AT}G-----G{GT}--TCGGAG{GT}CGTCC--------CGTCCGCGGGCGTCGGCCCGTGCCC----CCGCGG{CT}GCCACAACGAA--CCCGGCGCGGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCCCGTCGAGCG{CT}--CC{AG}CGCCCCGGAGAC--GGTGCGCGTGCGATCGGCGG-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTGCCTGGGTGTCACGC Commiphora_sahafariensis_10I1205 ----------------------TCTGTAGGTG-ACCT-GCGGAAGGATCATTGTCGAAACCTGCCCGCCAGCAGAACGACCTGCGAACCC-GTTGGTTTGAGAAAACAAACAGACGACG-GGAGG-----GGTGG----CAC-GAGCCCC-CCTCCCGTCC----GCGTTGCAGG-----GG--TCGGAGGCTTCC--------CGTCTGCGGGCGTCGGCCCGTGCCC----ATGCGGTGCCACAACGAA--CCCGGCACAGACCGCGCCAAGG-AAGCCATAACG---GGAGAGCTCGTCGAGCCT--CCACGCCCCGGAGAC--GGTGCATGTGCAATCGGCGA-CGCCTTCTTCGAT--TATCCAAAACGACTCTCGGCAACGGATATCTAGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-TGTGAACCATCGAGTCTTTGAACGCAAGTTGCAACCCAAGCCTTTAGGTCGAGGGCACGTCTGCCTG---------- Commiphora_sp_G_79 -AGGAGAAGTCGTAACAAGGTTTCCGTAGGTGAACCT-GCGGAAGGATCATTGTCGAAACCTGCAC---AGCAGAACGACCCGTGAACAC-----GTTTCATCACAAGGGGGAGGCACG-GGTGT-----TATAGCCCCCGT-GATCGCC-CCCACCTGCCGTCGGGGCGAAGGG-----CGTTTCGCATGCTCCCGTGCCCTGTGTGCGTGGGCAGCGACTCGTTCCCGCCACGTCGGCACAACAACGAAC-CCCGGCGCGGAATGCGCCAAGG-AAAAAGCAACA---AGAGAGCGATGCTCCCGT-----CGCCCCGGACAC--GGTGTGCGTGCGGGCAGCAACCGCCTTCTCTCATT-AATCCAAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCC-CGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCCAAGCCTTTAGGCCGAGGGCACGTCTG-------------- Commiphora_spnov_Bursera_82 --------------------------TAGGTGAACCT-GCGGAAGGATCATTGTCGAAACTTGCCCGCCAGCAGAACGAC{AC}CG{CT}GAACCC-GTTAGTTTGAGAAAACGAACAAACGAC{AG}-GGAGG-----GG{CT}{AG}G----{CT}{AG}C-GAGCTCC-CC{GT}CCTG{CT}C{CT}----G{CT}GTCGCG{AG}G-----GG--TC{AG}GAGGC{AG}TCC--------{CT}{AG}TCT{AG}CGGTCGTCGGCC{CT}GT{GT}{CT}CC----CCG{AT}GG{CT}GCCA{CT}AAC{CG}AA--CCCGACG{CT}{AG}GACCG{CT}GCCAAGG-AA{GT}CCATAACG---GGAGAG{CT}CCGTCGAGC{AC}T--CCA{CT}GCCCCGGAGAC--G{AG}TGCG{CT}{GT}TG{CT}{GT}AT{CT}G{AG}C{AG}G-{CT}GCCTTCTT{CT}GAT--TATCCTAAACGACTCTCGG{CT}AAC{AG}GATATCTAGGCTCTCGCATC{AG}ATGAAGAA{AC}GTAGCGAAAT{AG}C{AG}ATACTTGGTGTGAATTGCAGAATCC-CGT{AG}AACCATCGAGTCTTTGAACGCAAGTT{AG}CGCCCCAAGCCTTTAGGC{CT}GAGGGCACGTCT--------------- ; END; [ The following blocks are output data for analysis step 15058 ] BEGIN TREES; TITLE Com_ITS_Rhynchocarpa; LINK TAXA = TaxaForAnalysisStep15058; TREE PAUP_1 = [&R] ((Commiphora_capuronii_67:0.00220553,Commiphora_cf_capuronii_65:4.6449E-4):0.23789579,(Commiphora_cf_marchandii_117:0.27472926,(Commiphora_bardotiae_62:0.17428448,(Commiphora_sp_G_79:0.17138549,((Commiphora_lasiodisca_84:1.0E-8,(Commiphora_lasiodisca_10I1112:1.0E-8,Commiphora_lasiodisca_59:1.0E-8):1.0E-8):0.09182355,((Commiphora_grandifolia_53:0.08844206,(Commiphora_elliptica_43:0.02626709,(Commiphora_cf_ellipticaA_46:0.00290904,Commiphora_cf_ellipticaBursera_51:0.00295486):0.0156664):0.05054816):0.02069977,(Commiphora_pterocarpa_106:0.04598185,((Commiphora_aprevalii_128:0.03495782,Commiphora_granulifera_125:0.02170653):0.0275615,(Commiphora_spnov_Bursera_82:0.02103303,((Commiphora_guillauminii_100:0.03140347,Commiphora_sahafariensis_10I1205:0.06224485):0.0026373,(((Commiphora_pterocarpa_10I2811:0.00241327,(Commiphora_brevicalyx_vez_10I2009:0.00483033,Commiphora_grandifolia_10I1301:0.01694802):0.00265461):0.00711835,(Commiphora_falcata_10I2603:0.00797238,(Commiphora_brevicalyx_brev_10I2405:0.01105288,(Commiphora_marchandii_10II1504:0.00258544,Commiphora_marchandii_143:0.0176384):0.00545645):0.01176605):0.01170906):7.2379825E-5,(Commiphora_bardotiae_10I1101:0.0069939,((Commiphora_aprevalii_10I2004:0.00462294,Commiphora_lamii_10I2602_ITS12:0.0135469):0.00543184,((Commiphora_capuronii_10I1504:1.0E-8,Commiphora_capuronii_4885:1.0E-8):0.00703059,(Commiphora_fraxinifolia_5831:0.0086027,(Commiphora_elliptica_10I0901:1.0E-8,Commiphora_morondavensis_10II1405_ITS12:0.00372458):0.00981693):0.0):1.0E-8):1.0E-8):0.00230136):0.0):0.00212468):4.0824E-4):0.0):0.0):0.05277522):0.04908957):0.0414898):0.0365688):0.23789579); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr79774] END;