#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 10:54 GMT TreeBASE (cc) 1994-2008 Study reference: Tripathi A.K., Singh K., Pareek A., & Singla-pareek S.L. 2015. Histone chaperones in Arabidopsis and rice: genome-wide identification, phylogeny, architecture and transcriptional regulation. BMC Plant Biology, 15(42). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16883] [ The following blocks are input data for analysis step 15353 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15353; DIMENSIONS NTAX=29; TAXLABELS Arabidopsis_thaliana_CAF1CL1 Arabidopsis_thaliana_CAF1CL2 Arabidopsis_thaliana_CAF1CL3 Arabidopsis_thaliana_CAF1CL4 Arabidopsis_thaliana_CAF1CL5 Arabidopsis_thaliana_CAF1CL6 Chlamydomonas_reinhardtii_Cre12.g523200.t1.1 Chlamydomonas_reinhardtii_Cre17.g724850.t1.2 Homo_sapiens_CAF1C Oryza_sativa_CAF1CL1 Oryza_sativa_CAF1CL2 Oryza_sativa_CAF1CL3a Oryza_sativa_CAF1CL3b Oryza_sativa_CAF1CL4 Oryza_sativa_CAF1CL5 Physcomitrella_patens_Phpat.012G061300.1.p Physcomitrella_patens_Phpat.012G061300.2.p Physcomitrella_patens_Phpat.015G071000.1.p Physcomitrella_patens_Phpat.015G071000.2.p Physcomitrella_patens_Phpat.015G071000.3.p Physcomitrella_patens_Phpat.022G022400.1.p Picea_abies_MA_10425957g0010 Picea_abies_MA_142023g0010 Saccharomyces_cerevisiae_CAF1p50 Selaginella_moellendorffii_107569 Selaginella_moellendorffii_121554 Selaginella_moellendorffii_134213 Selaginella_moellendorffii_233646 Selaginella_moellendorffii_431142 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M25500] TITLE Histone_chaperone_CAF1C_matrix; LINK TAXA = TaxaForAnalysisStep15353; DIMENSIONS NCHAR=621; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_CAF1CL1 -----------------------MGKDEEEMRGEI--------------------------EERLINEEYKIWKK------------NTPFLYDLVITHALEWPSLTVEWLPDREEP--SGKDYSVQKMILGTHTSESEPNYLMLAQVQLPLDDTESEARQYDDDRSEFGGFGCATGKVQ----------------------IIQQINHDGEVNRARYMPQNPFIIATKTVNAEVYVFDYSKHPSK----PPLDGAC------------NPDLKLRGHSS--EGYGLSWSKFKQGHLLSGSDDAQICLWDINATPK-NKS---------------------------LDAQQIFKAHEGVVEDVAWHLR--------HEYLFGSVGDDQYLLIWDLRSPSASKPVQSVVAHSMEVNCLAFN--PFNEWVVATGSTDKTVKLFDLRKLS----------------TALHTFDSHK---EEVFQVGWNPKNETILASCC-LGRRLMVWDLSRIDEE------------QTVEDAEDGPPELLFIHGG-------HTSKISDFSWNPCEDWVISSVAEDN-------ILQIWQMAENIYHDEDDAPGEEPSKAS---------- Arabidopsis_thaliana_CAF1CL2 -------------------------MAAEEGKDEA--------------------------GLDQVEEEFSIWKR------------NTPFLYDLMISHPLEWPSLTLHWVPSTPIPYSKDPYFAVHKLILGTHTSGGAQDFLMVADVVIPTP-DAEPG-------LGGRDQEPIVPKVE----------------------IKQKIRVDGEVNRARCMPQKPTLVGAKTSGSEVFLFDYARLSGK----PQTS-EC------------DPDLRLMGHEQ--EGYGLAWSSFKEGYLLSGSQDQRICLWDVSATAT-DKV---------------------------LNPMHVYEGHQSIIEDVAWHMK--------NENIFGSAGDDCQLVIWDLR---TNQMQHQVKVHEREINYLSFN--PFNEWVLATASSDSTVALFDLRKLT----------------APLHVLSKHE---GEVFQVEWDPNHETVLASSG-EDRRLMVWDINRVGDEQL----------EIELDAEDGPPELLFSHGG-------HKAKISDFAWNKDEPWVISSVAEDN-------SLQVWQMAESIYREDDEDEDDDDEGNQNAQHSNENQK Arabidopsis_thaliana_CAF1CL3 --------------------------MADEGKEET--------------------------GMGQVEEDFSVWKK------------NTPFLYDLLISHPLEWPSLTVHWVPSTPNPYVADSYFGVHKLILGTHTSGSAQDFLMVADVVTPTP-NAEPG-------IGGANQDPFIPKVE----------------------IRQRIRVDGEVNRARCMPQKPTLVGAKTSGCEVFLFDYAKHAAK----SQTS-EC------------DPDLRLVGHDK--EGYGLSWSPFKEGYLLSGSQDQKICLWDVSATPQ-DKV---------------------------LNAMFVYEGHESAIADVSWHMK--------NENLFGSAGEDGRLVIWDTR---TNQMQHQVKVHEREVNYLSFN--PFNEWVLATASSDSTVALFDLRKLN----------------APLHVMSSHE---GEVFQVEWDPNHETVLASSG-EDRRLMVWDLNRVGEEQL----------EIELDAEDGPPELLFSHGG-------HKAKISDFAWNKNEPWVIASVAEDN-------SLQVWQMAESIYRDEEDAEDIKEDITQQS-------- Arabidopsis_thaliana_CAF1CL4 MESDEAAAVSPQAT--TPSGGTGASGPKKRGRKPKTKEDSQTPSSQQQSDVKMKESGKKTQQSPSVDEKYSQWKG------------LVPILYDWLANHNLVWPSLSCRWGPQLEQA----TYKNRQRLYLSEQTDGSVPNTLVIANCEVVKPRVAAAEH------ISQFNEEARSPFVK----------------------KYKTIIHPGEVNRIRELPQNSKIVATHTDSPDVLIWDVETQPNRHAVLGAANSRP--------------DLILTGHQD--NAEFALAMCPTEPFVLSGGKDKSVVLWSIQDHITTIGTDSKS--SGS--IIKQTGEGTDKNESPTVGPRGVYHGHEDTVEDVAFSPT--------SAQEFCSVGDDSCLILWDARTG-TNPVTKVEKAHDADLHCVDWN--PHDDNLILTGSADNTVRLFDRRKLTANG-----------VGSPIYKFEGHK---AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDYDRVSKKSD--------------RAAKSPAGLFFQHAG-------HRDKVVDFHWNASDPWTIVSVSDDCETTGGGGTLQIWRMSDLIYRPEEEVVAELEKFKSHVMTCASKP- Arabidopsis_thaliana_CAF1CL5 MESEAAATVQATRPRRAPRTPVTAILTDKRRRKPKSNNESQLPFLLQQS------------QKATVDDTYSQWKT------------LLPILYDSFVNHTLVWPSLSCRWGPQLEQA----GSKT-QRLYLSEQTNGSVPNTLVIANCETVN---------------RQLNEKAHSPFVK----------------------KYKTIIHPGEVNRIRELPQNSKIVATHTDSPDILIWNTETQPDRYAVLGAPDSRP--------------DLLLIGHQD--DAEFALAMCPTEPFVLSGGKDKSVILWNIQDHITMAGSDSKS--PGS--SFKQTGEGSDKTGGPSVGPRGIYNGHKDTVEDVAFCPS--------SAQEFCSVGDDSCLMLWDARTG-TSPAMKVEKAHDADLHCVDWN--PHDNNLILTGSADNTVRVFDRRNLTSNG-----------VGSPVYKFEGHR---AAVLCVQWSPDKSSVFGSSA-EDGLLNIWDCDRVGKKSE--------------RATKTPDGLFFQHAG-------HRDKVVDFHWSLLNPWTIVSVSDNCESIGGGGTLQIWRMSDLIYRPEDEVLTELEKFKSHVFTCTSKS- Arabidopsis_thaliana_CAF1CL6 ----------------------MGRNVKTKAK-------------------RKNKKKAEASSSEIPSIPTRVWQPGVDTLEDGEELQCDPSAYNSLHGFHVGWPCLSFDILGDKLGL-NRTEFPHTLYMVAGTQAEKAAHNSIGLFKITNVSGKRRDVVPKTFGNGEDEDEDDEDDSDSDDDDGDEASK---------TPNIQVRRVAHHGCVNRIRAMPQNSHICVSWADSGHVQVWDMSSHLNALAESETEGKDGTS-----PVLNQAPLVNFSGHKD--EGYAIDWSPATAGRLLSGDCKSMIHLWEPASG-SWAVDPI------------------------------PFAGHTASVEDLQ-------WSPA-EENVFASCSVDGSVAVWDIRLG-KSPALSFK-AHNADVNVISWN--RLASCMLASGSDDGTFSIRDLRLIKGG-------------DAVVAHFEYHK---HPITSIEWSAHEASTLAVTS-GDNQLTIWDLSLEKDEEEEAEFNAQT-KELVNTPQDLPPQLLFVHQ--------GQKDLKELHWHNQIPGMIISTAGDG--------FNILMPYNIQNTLPSELPA----------------- Chlamydomonas_reinhardtii_Cre12.g523200.t1.1 -----------------------MGRDDEDYPDEV--------------------------EERLTNEEYKIWKK------------NTPFLYDLVVTHALEWPSLTVQWLPDKEIT--AGKDYSKQKLILGTHTSDNEQNYLMIAEVQLPLEESELDGRGFDDERNEVGGFGGAHGKVH----------------------VIQQINHDGEVNRARHMPQDKFIIATKTVSADVYVFDYSKHPSK----PSADGLC------------RPNLVLTGHKT--EGYGLAWSPYMPGHLLSGSDDAQICLWDIQAAPKNVNK---------------------------LAARTIYQEHQGVVEDVAWHCH--------HADIFGSVGDDKQLILWDVRRPPSQGVMIAAEAHSAEVNCIAFN--PLNPNILATGSADKTVALHDWRNLS----------------QRLHVFEGHA---DEVFQIGWSPKNETVLASCG-ADRRVMVWDLSRIGDE------------QTPEDAEDGPPELLFIHGG-------HTSKISDLAWNGNDDWVVASVAEDN-------ILQIWQMASNIYEEQDGMMA----------------- Chlamydomonas_reinhardtii_Cre17.g724850.t1.2 ----------------------MRNPKKGKAKPGKAKAKP-----------SKKKEEEMELDEEPETATAKVWRPGIDEVAEDEELEYDPTAYDCLHRFQVDWPCLSFDILKDDLGG-PRSTFPHTVYLACGTQAATARQNYVAFLRLASLGQGRHGKKAAPVDSDDEESDDEDSDEDGDSDMGEEGAPEMKGAPGEAPATFHFRMVAMNCGVNRIRSMPQQPGVVAVWGDNAQVKLIDGSKLLAELAAETEPTAANAKGKGGTNKAKPQDLKPLASHTHSSEGYALDWSAVRPGRLASGDCRHKIHVWEPAEGGRWAVGG-------------------------------AHTGHEGSVEDIQ-------WSPT-EDTVFASCGVDRSVRIWDTRER-GRPMLTAAGAHDSDVNVISWN--RGVTYMLASGADDGCIRIWDLRTFASGGGAGEGAGAAAASPAHVAQFLYHR---SHVTSVEWCPYEGSMLASAA-ADNQLAVWDLALERDPEEEAALAP---EGNAAAPEDLPAQLLFLHA--------GQNDLKELHWHSQIPGLIVSTAGDG--------FNLFKASNM--------------------------- Homo_sapiens_CAF1C -----------------------MADKEAAFDDAV--------------------------EERVINEEYKIWKK------------NTPFLYDLVMTHALEWPSLTAQWLPDVTRP--EGKDFSIHRLVLGTHTSD-EQNHLVIASVQLPNDDAQFDASHYDSEKGEFGGFGSVSGKIE----------------------IEIKINHEGEVNRARYMPQNPCIIATKTPSSDVLVFDYTKHPSK----PDPSGEC------------NPDLRLRGHQK--EGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKV---------------------------VDAKTIFTGHTAVVEDVSWHLL--------HESLFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFN--PYSEFILATGSADKTVALWDLRNLK----------------LKLHSFESHK---DEIFQVQWSPHNETILASSG-TDRRLNVWDLSKIGEE------------QSPEDAEDGPPELLFIHGG-------HTAKISDFSWNPNEPWVICSVSEDN-------IMQVWQMAENIYNDEDPEGSVDPEGQGS--------- Oryza_sativa_CAF1CL1 -------------------MPKATAAEEEEFRAEV--------------------------EERLINEEYKIWKK------------NTPFLYDLVITHALEWPSLTVQWLPDRAEP--AGKDHSVQKMVLGTHTSDNEPNYLMLAQVQLPLDDAEADARHYDDDHAEIGGFGAASGKVQ----------------------IVQQINHDGEVNRARYMPQNSFIIATKTVSAEVYVFDYSKHPSK----PPLDGAC------------NPDLRLKGHNS--EGYGLSWSIFKEGHLLSGSDDAQICLWDIKANSK-NKT---------------------------LDALQIFKYHDGVVEDVAWHLR--------HEYLFGSVGDDHNLLIWDLRSPVSTKPVQSVAAHQGEVNCLAFN--PFNEWVVATGSTDKTVKLFDLRKID----------------TSLHTFDCHK---EEVFQVGWSPKNETILASCC-LGRRLMVWDLSRIDQE------------QTPEDAEDGPPELLFIHGG-------HTSKISDFSWNPCEDWVIASVAEDN-------ILQIWQMAENIYHDEDDVPTDDPAKAP---------- Oryza_sativa_CAF1CL2 -------------------------MDGGSSTAAR--------------------------SSAAEMEEHQNWKK------------NAPVLYDLVISQPLEWPSLTVQWLPSHSR---SPGSARSHRLVLGTHTSDETPNHLLLADAALPLPPRLAAA-------AAAAGGAVPAPSVS----------------------ISRSVPHKGEVNRARCMPQRPYTVATKTCVDEVHVYHLGDGGEK----G------------------GADVVLRGHEA--EGYGLAWSPMKEGLLLSGSYDKKICLWDLAAGSG-ASS---------------------------LDAHHVFEAHDDVVEDVAWHLK--------DENLFGSAGDDCKLMMWDLR---TNKPGQSIVAHQKEVNSLSFN--PFNEWILASASGDATIKLFDLRKLS----------------RSLHVFDSHDSCRGEVFQVEWNPNLETVLASSA-ADKRVMIWDVSRIGDE------------QAEEDANDGPPELLFVHGG-------HTAKISELSWNPTQKWVMASVAEDN-------ILQIWEMAESIYCDDNYLHDNDDDSCPAT-------- Oryza_sativa_CAF1CL3a -------------------------MKEKGSR-------------------------------AAVDERYAQWKS------------LIPVLYDWFANHNLVWPSLSCRWGPQFEKA----TYKNRQRLYLSEQTDGTVPNTLVIANCEVVKPRVAAAEH------ISQFNEEARSPFVK----------------------KYKTIIHPGEVNRIRELPQNSKIIATHTDSPDVLIWDVEAQPNRQAQLAQMESRP--------------DLILRGHKD--IAEFALAMCPAEPYVLSGGKDKSVVWWSIQDHISALGDSSKT--ESSPGASGSKGKTANDKDSPKVDPRGIFLGHDSTVEDVQFCPS--------SAQEFCSVGDDSCLILWDARSG-TGPAVKVEKAHGGDVHCVDWN--LHDVNYILTGSADNSVRMWDRRNLGSGG-----------AGIPVHKFEGHK---AAVLCVQWSPDKASVFGSSA-EDGFLNVWDHEKVGNK----------------KNPNAPAGLFFQHAG-------HRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQIWRMSDLIYRPEDEVLAELENFKTHLASCAPRS- Oryza_sativa_CAF1CL3b -------------------------MKEKGSR-------------------------------AAVDERYAQWKS------------LIPVLYDWFANHNLVWPSLSCRWGPQFEKA----TYKNRQRLYLSEQTDGTVPNTLVIANCEVVKPRVAAAEH------ISQFNEEARSPFVK----------------------KYKTIIHPGEVNRIRELPQNSKIIATHTDSPDVLIWDVEAQPNRQAQLAQMESRPDL-----VPPDSRPDLILRGHKD--IAEFALAMCPAEPYVLSGGKDKSVVWWSIQDHISALGDSSKT--ESSPGASGSKGKTANDKDSPKVDPRGIFLGHDSTVEDVQFCPS--------SAQEFCSVGDDSCLILWDARSG-TGPAVKVEKAHGGDVHCVDWN--LHDVNYILTGSADNSVRMWDRRNLGSGG-----------AGIPVHKFEGHK---AAVLCVQWSPDKASVFGSSA-EDGFLNVWDHEKVGNK----------------KNPNAPAGLFFQHAG-------HRDKIVDFHWNSSDPWTIVSVSDDGESTGGGGTLQIWRMSDLIYRPEDEVLAELENFKTHLASCAPRS- Oryza_sativa_CAF1CL4 ----------------------MGRKIKVKKK-------------------KASSKKAEASSSRVPSAPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGL-VRSEFPHTLYGVAGTQAERATWNYIGIFKICNINGKKREPIPASAIDG-DSDMDSESSSDEEDEAVNEDT----------MPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDD-----RIHNHVPVKIFGSHKD--EGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSN-SWNVDTN------------------------------PFVGHTASVEDLQ-------WSPT-EADIFASCSADRTISIWDIRTG-KKPCISVR-AHNADVNVISWN--RLASCMIASGCDDGSFSIRDLRLIKD--------------DSLVAHFEYHK---HPITSVEWSPHEPSTLAVSS-ADHQLTIWDLSLEKDAEEEAEFRARM-REQADAPEDLPPQLLFVHQ--------GQKDLKELHWHPQIPSMIISTAADG--------FNMLMPSNIDTTIR-EADA----------------- Oryza_sativa_CAF1CL5 ----------------------MGRKIKVKKK-------------------KASSKKAEASSSRVPSCPAKVWQPGVDTLEEGEELQFDPQAYNYLRGFNIGWPCLSFDVVRDQLGL-VRSEFPHTLYGVAGTQAERASWNYIGIFKICNINGKKREPIPASAIDG-DSDMDSESSSDEEDEAANEDT----------MPILHLKKVAHAGCVNRIRSMNQEPHICATWGDTGHVQVWDFSSFLNSLAESGAVAHNEDD-----RIHNHVPVKIFGGHKD--EGYAIDWSPLVTGRLVSGDCNKCIHLWEPTSN-SWNVDTN------------------------------PFVGHTASVEDLQ-------WSPT-EADIFASCSADRTISIWDIRTG-KKPCISVR-AHNADVNVISWN--RLASCMIASGCDDGSFSIRDLRLIKD--------------DSLVAHFEYHK---HPITSVEWSPHEPSTLAVSS-ADHQLTIWDLSLEKDAEEEAEFRARM-REQADAPEDLPPQLLFVHQ--------GQKDLKELHWHPQIPSMIISTAADG--------FNMLMPSNIDTTIR-EADA----------------- Physcomitrella_patens_Phpat.012G061300.1.p ----------------------MARTKKKGKRGNKKPNKQELQASEYGAEVEMEDAEGNGASASAPPQPTKVWVPGVDEIGDDEELQFDPTAYHCLHSFKLGWPCLSFDIMRDDLGV-LRRDFPHAMYCVAGTQADQPGSNSIAVVHMTNVTGKIPKAPSAMEDGDDDADDSDSSSDEEDIEDLEGAPNQPI---QSKKPIFKVRLVAHQGCVNRVRAMTQQSHIVATWGDSGYVQVWDMGNHIRSMATSGPD-PSGAP-----TTVRQAPLHIFTGHKD--EGYALDWSPITAGRLLSGDCKSNIHLWEPTPGGKWAVEKT------------------------------PYTGHSASVEDLQ-------WSPT-EADVFASCSVDGTLRIWDTRNR-QGSAISIK-AHDADINVISWN--RVASCMIASGCDDGTFRIWDLRNLKE--------------DSFVAHFKYHT---LPVTSIEWSPHDASTLGVTS-ADHQLTIWDLSLERDAEEEALYQAQLKQQQAEAPQDLPPQLLFVHQ--------GQKDLKEFHWHPQIQGMLMSTAGDG--------FNILRPSNLDNLPAL--------------------- Physcomitrella_patens_Phpat.012G061300.2.p ----------------------MARTKKKGKRGNKKPNKQ---ASEYGAEVEMEDAEGNGASASAPPQPTKVWVPGVDEIGDDEELQFDPTAYHCLHSFKLGWPCLSFDIMRDDLGV-LRRDFPHAMYCVAGTQADQPGSNSIAVVHMTNVTGKIPKAPSAMEDGDDDADDSDSSSDEEDIEDLEGAPNQPI---QSKKPIFKVRLVAHQGCVNRVRAMTQQSHIVATWGDSGYVQVWDMGNHIRSMATSGPD-PSGAP-----TTVRQAPLHIFTGHKD--EGYALDWSPITAGRLLSGDCKSNIHLWEPTPGGKWAVEKT------------------------------PYTGHSASVEDLQ-------WSPT-EADVFASCSVDGTLRIWDTRNR-QGSAISIK-AHDADINVISWN--RVASCMIASGCDDGTFRIWDLRNLKE--------------DSFVAHFKYHT---LPVTSIEWSPHDASTLGVTS-ADHQLTIWDLSLERDAEEEALYQAQLKQQQAEAPQDLPPQLLFVHQ--------GQKDLKEFHWHPQIQGMLMSTAGDG--------FNILRPSNLDNLPAL--------------------- Physcomitrella_patens_Phpat.015G071000.1.p -------------------------MKK------------------------------------VPEDRYAQWKL------------LVPALYDWLTNHHLMWPSLSCRWGPQLEAG----SSKTRQLLFYSERTDGECPNTIVVAQCDIMKPRTAAAEQ------ISQFKEGGKSPHLK----------------------KLKTIIHPGEVNRIREIPQNSNILATHTDSPKVLIWNTKTQPNRATTSAASESKP--------------DLVLIGHTD--NAEFALNVSRTAPYVISGGRDKCVLLWSIEDHITTMQEQTPKSITPTAAGSKQSGTAGGAADTTNVYTRGIFKGHTDTVEDVQFRPS--------SMNEFCSVGDDSCLLLWDARTG-YQPISKVVKAHNADLHCVDWN--AHDENLILTGSADNSVRLFDHRKILARG-----------QAIPVEQFEGHS---AAVLCVQWCPDRASVFGSCA-EDGLLNVWDYEKVGKALD---------TTNLKQPVKVPPGLFFQHTG-------HRDKVVDFHWDSRDPWTIVSVSEDANTPGGGGTLQIWRMIDFIYRPEDEVLAELDEVRPQLVSQNTPAS Physcomitrella_patens_Phpat.015G071000.2.p -------------------------MKK------------------------------------VPEDRYAQWKL------------LVPALYDWLTNHHLMWPSLSCRWGPQLEAG----SSKTRQLLFYSERTDGECPNTIVVAQCDIMKPRTAAAEQ------ISQFKEGGKSPHLK----------------------KLKTIIHPGEVNRIREIPQNSNILATHTDSPKVLIWNTKTQPNRATTSAASESKP--------------DLVLIGHTD--NAEFALNVSRTAPYVISGGRDKCVLLWSIEDHITTMQEQTPKSITPTAAGSKQSGTAGGAADTTNVYTRGIFKGHTDTVEDVQFRPS--------SMNEFCSVGDDSCLLLWDARTG-YQPISKVVKAHNADLHCVDWN--AHDENLILTGSADNSVRLFDHRKILARG-----------QAIPVEQFEGHS---AAVLCVQWCPDRASVFGSCA-EDGLLNVWDYEKVGKALD---------TTNLKQPVKVPPGLFFQHTG-------HRDKVVDFHWDSRDPWTIVSVSEDANTPGGGGTLQIWRMIDFIYRPEDEVLAELDEVRPQLVSQNTPAS Physcomitrella_patens_Phpat.015G071000.3.p -------------------------MKK------------------------------------VPEDRYAQWKL------------LVPALYDWLTNHHLMWPSLSCRWGPQLEAG----SSKTRQLLFYSERTDGECPNTIVVAQCDIMKPRTAAAEQ------ISQFKEGGKSPHLK----------------------KLKTIIHPGEVNRIREIPQNSNILATHTDSPKVLIWNTKTQPNRATTSAASESKP--------------DLVLIGHTD--NAEFALNVSRTAPYVISGGRDKCVLLWSIEDHITTMQEQTPKSITPTAAGSKQSGTAGGAADTTNVYTRGIFKGHTDTVEDVQFRPS--------SMNEFCSVGDDSCLLLWDARTG-YQPISKVVKAHNADLHCVDWN--AHDENLILTGSADNSVRLFDHRKILARG-----------QAIPVEQFEGHS---AAVLCVQWCPDRASVFGSCA-EDGLLNVWDYEKVGKALD---------TTNLKQPVKVPPGLFFQHTG-------HRDKVVDFHWDSRDPWTIVSVSEDANTPGGGGTLQIWRMIDFIYRPEDEVLAELDEVRPQLVSQNTPAS Physcomitrella_patens_Phpat.022G022400.1.p -----------------------MAKEEDEYRDEM--------------------------EERLVNEEYKIWKK------------NTPFLYDLVITHALEWPSLTVQWLPNREEV--GGKDFSLQRLIVGTHTSDNEPNYLMIAQVQLPLEDSENNARQYDDERGEMGGFGCSSGKVQ----------------------VVQQINHEGEVNRARYMPQNQFYIATKTVSAEVYVFDYSKHPSK----PPQDGQC------------NPDIRLRGHKT--EGYGLSWSPIKDGHLLSGSDDAQICLWDIRGTPKQNRV---------------------------IEALQIFQGHVGVVEDVAWHVQ--------HEHLFGSVGDDRQLLIWDTRAAPTDKPLHAVEAHQAEVNCLAFN--PKNEWVLATGSADRTVALYDLRKMS----------------RSLHTFVNHT---EEVFQIGWSPNNETILASCG-ADRRLMVWDLSRIGEE------------QTPEDAEDGPPELLFIHGG-------HTSKISDFSWNRSEDFLIASVAEDN-------ILQIWEMAENIYHDEDESPADDGP------------- Picea_abies_MA_10425957g0010 ----------------------MARNLKKKKRVPKT---------------RKASNKGEGTSKTT-QQDAKVWQPGVDKLEEGEELQCDTSAYDCLHAFHIGWPCLSFDIIHDSLGV-VRTEFPHTVFCIAGTQADNAANNAVGVVKLSNISGKKRKLLPAGS--DDDEDDSDNSSDEDDEDDDDLGFE-------SKKPTLQVRMVAHQGCINRIRSMQQQPSIVATWADNGYVQIWDFNTHLSSLATSDPRVSTALS-----AAVHQAPLQIFSGHKD--EGYALDWSPVTPARLLSGDCKGCIHLWEPTSGGKWTVDKS------------------------------PFKGHTDSVEDLQ-------WSPT-EANVFASCSVDRKIAIWDARIR-EQPALSIK-AHDADVNVISWN--RLASCMIASGSDDGSFSIWDLRSFKE--------------DSLVAHFKYHK---QPITSIEWSPHEASTLAASS-ADNQLTIWDLSLERDEEEEAEFKATL-EEKVNAPEDLPPQLLFVHQ--------GQKDLKEVHWHAQIPGLLMSTSSDG--------FNVFKPTNIENVLPQQ-------------------- Picea_abies_MA_142023g0010 -----------------------MAT---AMGDEN--------------------------TADPV-EEFNIWKK------------NTPFLYDLVITHALEWPSLTVQWLPDRHQS--PTADYSVQKMIVGTHTSEDDPNYLIIAEVQIPLQQS---------EDNNIGGFESTEAKVG----------------------FLHHF-----------LPT---------------------------------------------------------------Y-LKWY----GLLLRESNS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Saccharomyces_cerevisiae_CAF1p50 ----------------------MNQCAKDITHEASS-------------------------IPIDLQERYSHWKK------------NTKLLYDYLNTNSTKWPSLTCQFFPDLDTT----SDEHRILLSSFTSSQKPEDETIYISKISTLGHIKWSSLNNFDMDEMEFKPENSTRFPSKHLVN------------------DISIFFPNGECNRARYLPQNPDIIAGASSDGAIYIFDRTKHGSTRIRQSKISHPFETKLFGSHGVIQDVEAMDTSSADINEATSLAWNLQQEALLLSSHSNGQVQVWDIKQYSHENPIIDLP--------------------------LVSINSDGTAVNDVTWMPT--------HDSLFAACTEGNAVSLLDLRTK-KEKLQSNREKHDGGVNSCRFN--YKNSLILASADSNGRLNLWDIRNMNK---------------SPIATMEHGT----SVSTLEWSPNFDTVLATAGQEDGLVKLWDTS--------------------------CEETIFTHGG-------HMLGVNDISWDAHDPWLMCSVANDN-------SVHIWKPAGNLVGHS---------------------- Selaginella_moellendorffii_107569 ---------------------------------------------------------------------SQVWRPGVDTLEKDEELQFDPSTYDCLHAFHLGWPCLSFDIVRDTLGA-LRHEFPHTMFCVAGTQADASTSNTIAIVKLSNLTGKKRSPNAVPN--DESGSESDDSEDEQDQETPTPAPDE-----SSKIPKLEERMVPHQGCVNRIRSMPQQPHIVASWSAEGFVQMWDFSSQLNAVATNN---DAGSS-----KRTSHPPLQICKAHKD--EGFAMDWSPMTPGRFLSGDCKGVIHFWEPMPGGRWNVGNA------------------------------HCLGHSGSVEDLQ-------WSPS-EENVFASCSVDKTIGIWDLRSR-RK-ELSVK-AHDTDVNVISWNKNKSASCLLASGSDNGLFRVWDLRAFKE--------------DSAVAHFTHHS---SYITSIEWSPHEESTLAVAS-ADNQLTIWDVALERDTEEEAQYQMELGQEQAAAPENLPAQLLFVHQASWELLGSGQKDMKEVHWHPQIHGLLVSTAGDG--------FNVFRPCNL--------------------------- Selaginella_moellendorffii_121554 ----------------------MARSGRKKKS---------------------------SKQRRGASPKLEVWRPGVDPLDEGEELQYEPSAYDTIHAFRLGWPCLSFDILRDELGA-LRHEFPLTLFCTAGTQAAKPADNRLIVAKLTNISGKKRGVELAAS---DDGDSSSSSSDESDDEEMSDKT-----------PKLEVRMIAHHGCINRIRSMPQEPNIIATWSETGVVQIWDVKSLLQELSSGN---AGSSS-----RIAHQAPLQVFSGHEV--EGFALDWSLAHQGWLASGDNNGVIHVWQPNRR-EWIVGGR------------------------------ALVGHSSSVEDLQASFHLHFWCPTLDPFRLASCSSDGTLRLWDVP-T-CTCTAMWK-IHDADVNVISWR----SDSVLASGGDDGIIYLWNLKHLKD---------------GPIWMTNYHS---APITSIEWSPHDSSMLAATS-ADNQLSVWDFSVEADPEEEAQV-----KQSVAAPKGLPESLLFVHQ--------GQRDLKELHWHPQLLGTIVSTSFSD--------FNVFKPSNL--------------------------- Selaginella_moellendorffii_134213 ---------------------------------------------------------------MAPTADYDLWKK------------HTPDLYDVIITHALDWPVTSAQWLPDHQRILLGIKALD--------DPEDCLENCVLIVKLAVPADLDAEIPENWV---RPPSSFLSCLSCVQ----------------------MTQWIKHEGQVNRARYMPQCPTIVAAKGETSRVCIFDTTKHENSGGLPSQVIAQT------------QPEMLLEGHTK--GGHGLSWNPFGCGILASGSRDGLVCVWDVGAAGS-------------------------------SSRPIITYPQNTPVGDLTWTSK--------HENVFSTGDEAGWMRTWDLR--DPLNPVVAARAHLDPLESLAYH--PYDEFCLATGSCDNTARIFDIRALS----------------QPMHTFVGHR---DTVVRVDWSPKYPGVLVTSS-EDHRVMLWNVQRIGEE------------QSAEDAEDGPPELLFIHGG-------HWDIVHDFSWDATTNLITS-VGEDH-------TVQIWRMAEHIECTIRDSSIASPSGCNHGEQGSP--- Selaginella_moellendorffii_233646 -----------------------MSKEDEEFRDES--------------------------EERLVNEEYKIWKK------------NTPFLYDLVITHALEWPSLTVQWLPDRVEP--PGKDYSVQKLILGTHTSDNEPNFLMIAEVQLPLEDTESDARVYDDERGEMGGFGSATGKVQ----------------------VIQQINHDGEVNRARYMPQNPFVIATKTVSAEVFVFDYSKHPSK----PPQEGVC------------NPDIRLRGHKT--EGYGLSWSPFKEGHLLSGSDDSQICLWDVTKAQR---------------------------------------AHNNVVEDVAWHCM--------HEYLFGSVGDDRHLFIWDIRVQTVDKPLHAIEAHKNEVNCLAFN--PLNEWVLATGSADKTVALFDMRKLT----------------SPLHTFVNHR---EEVFQIGWNPKNETILASCG-ADRRLMVWDLSRIGEE------------QTPEDAEDGPPELLFIHGG-------HTSKISDFSWNNKDDWVVASVAEDN-------ILQIWQMAENIYHDEDDVAEDMAIATN---------- Selaginella_moellendorffii_431142 ------------------------------------------------------------------MDDYHVWKK------------HTADLYDVVITHGLDWPVTSAQWLPDHQRILLGSKALD--------DPHDCLENCVLIVKLAVPADLDAEIHENW----------------------------------------MTQWIKHE----------------EGQDVASLHLRHHTTKHENSGGLPSQVISQA------------QPEMLLKGHTK--GGHG----------LPSG--------------------------------------------------------LDAYVG-LTRS--------------FQS-----------------------SRAHRDPLESLAYH--PYDEFCLATSSCDNTARIFDTRALS----------------QPLHTFVGHM---DTVVCVAWSPNHPSVLVTSA-EDHRLMLWDVKRIGEE------------QSAEDAKDGPPELLFIT------------------VDTGT------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 15353 ] BEGIN TREES; TITLE Histone_chaperone_CAF1C_Result; LINK TAXA = TaxaForAnalysisStep15353; TREE CAF1C_tree = [&R] ((((((((Chlamydomonas_reinhardtii_Cre12.g523200.t1.1,Selaginella_moellendorffii_233646)0.5850,Physcomitrella_patens_Phpat.022G022400.1.p)0.2260,(Picea_abies_MA_142023g0010,(Oryza_sativa_CAF1CL1,Arabidopsis_thaliana_CAF1CL1)0.6470)0.2950)0.4010,Homo_sapiens_CAF1C)0.2690,(Oryza_sativa_CAF1CL2,(Arabidopsis_thaliana_CAF1CL2,Arabidopsis_thaliana_CAF1CL3)0.9280)0.3240)0.2440,(Selaginella_moellendorffii_134213,Selaginella_moellendorffii_431142)1.0000)0.7720,(Saccharomyces_cerevisiae_CAF1p50,(((Physcomitrella_patens_Phpat.015G071000.1.p,Physcomitrella_patens_Phpat.015G071000.2.p)0.3590,Physcomitrella_patens_Phpat.015G071000.3.p)0.9950,(Arabidopsis_thaliana_CAF1CL5,(Arabidopsis_thaliana_CAF1CL4,(Oryza_sativa_CAF1CL3a,Oryza_sativa_CAF1CL3b)0.9900)0.3370)0.3520)0.9970)0.2280)0.9920,((Chlamydomonas_reinhardtii_Cre17.g724850.t1.2,Selaginella_moellendorffii_121554)0.2820,(((Physcomitrella_patens_Phpat.012G061300.1.p,Physcomitrella_patens_Phpat.012G061300.2.p)0.9990,Selaginella_moellendorffii_107569)0.3410,(Picea_abies_MA_10425957g0010,(Arabidopsis_thaliana_CAF1CL6,(Oryza_sativa_CAF1CL4,Oryza_sativa_CAF1CL5)1.0000)0.5080)0.3410)0.1850)0.9920); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr80624] END;