#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 01, 2025; 8:03 GMT

TreeBASE (cc) 1994-2008

Study reference:
Feng Z.H., Hua W., Fang Z.Y., Wen Z.J., Jie Z.F., & Feng H.C. 2015. Genome-wide transcriptomic
and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms
in the aluminum-accumulating species buckwheat (Fagopyrum tataricum). BioMed
Central, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16751]

[ The following blocks are input data for analysis step 15402 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep15402;
        DIMENSIONS NTAX=10;
        TAXLABELS
            Aegilops_tauschii_EMT05468
            Arabidopsis_thaliana_STAR1
            Fagopyrum_tataricum_STOL1
            Fagopyrum_tataricum_STOL2
            Oryza_sativa_Japonica_Group_STAR1
            'Populus trichocarpa XP_002325227'
            'Setaria italica XP_004966143'
            'Solanum tuberosum XP_006366268'
            Triticum_uraatu_EMS52544
            Vitis_vinifera_CAN70271
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M25150]

	TITLE Fagopyrum_STAR1;
	LINK TAXA = TaxaForAnalysisStep15402;
	DIMENSIONS NCHAR=294;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                             10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290    ]
[                                              .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Aegilops_tauschii_EMT05468            ------------------------------------------------------------------------------------------------------------------------------MDVLALRRKVGMLFQLPAMFDGSVGDNVRYGPQLRGKKLSEAEVKSLLSLSDLDPALSSRPASELSVGQAQRVALARPLANDPEVLLLDEPTSALDPISTQNIEEAIVRLKTARGLTTVIVSHSVKQIQRIADLVCLVVDGEVVEVLAPSALSEAKHPMARRFLELSS
Arabidopsis_thaliana_STAR1            ----------------------------MPSLWSNESDGSLREHLVDVVVSGSEPKIRVHDLTRVADD-GSRILKGVTIDIPKGMIVGVIGPSGSGKSTFLRSLN--RLWEPPESTVFLDGEDITNVDVIALRRRVGMLFQLPVLFQGTVADNVRYGPNLRGEKLSDEEVYKLLSLADLDASFAKKTGAELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTENIEDVIVKLKKQRGITTVIVSHSIKQIQKVADIVCLVVDGEIVEVLKPSELSHATHPMAQRFLQLSS
Fagopyrum_tataricum_STOL1             CALYCFHIKLSSLPLTASYFYELTAMSARENLQDDEEATELSILVQGDDRDTSEVKIRVRGLRKESDA-GTTILSGVDVDIPAGKIVGIVGPSGSGKSTFLRALN--RLWEPPPGTVYLDGCDICNLDVINLRRRVGMLFQLPALFQGTVADNVRYGPKLKGKRLGDDEVYKLLSFADLDSSFYHKNHNELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDALLKLKKN-GMTIVIVSHSIKQVQRVANLVYLFDNGTVVELLEPDKLHQAKHPIALRFLQIAG
Fagopyrum_tataricum_STOL2             ------PQKIQQP------------MAPSLSFQEESREHLLSVDEEAGDGDHRGVKFEVRDLVKESLT-GSTILDKVNVDIPRASIVGIIGPSGSGKSTFLRSLN--RLWEPPVGSVFLDGQDICQMDVLTLRRRVGMLFQLPALFEGTVADNVRYGPKLRGKKLSDQEVYKFLSLADLDASFYNKNHNELSIGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIESVLLKLKNSVGMTIVMVSHSIKQIQRIADVVCLLVNGSVVEVLKPEQLSEAKHPMALTFLQLSS
Oryza_sativa_Japonica_Group_STAR1     MRIARIPTSIPPHLRLPLDLSAVSPMGSASEHDVREHLLDVDGVGEEGAAAAAGPKIRVRGLTRRSEARGEEILRGVDLDVPRGVVVGVIGPSGSGKSTLLRALNRLRLWEPAPGAVLLDGVDICGIDVLALRRKVGMLFQLPAMFDGTVADNVRYGPQLQGKKLTDAEVQSLLSLADLDPALCSKPASELSVGQAQRVALARTLANDPEVLL-DEPTSALDPISTQNIEEAIVRLKKTRGLTTVMVSHSVKQIQRIADLVCLLVAGEVVEVLPPSELSEAKHPMAR-FLELS-
'Populus trichocarpa XP_002325227'    -------------------------------------------------KDGAEAKFRIRNLTKVSDA-GVPILNGINMDIPKGMIVGIIGPSGSGKSTVLRALN--RLWEPPSGTVFLDGHDVKDLDVLGHRRKVGMLFQLPALFDGTVADNIRYGPQLKGKKLTDDEVYKLLSLADLDSSFYKKTSNELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLKKQRGLTVVIVSHSIKQIQRIADVVCLLVNGEIVEVLKPDDLSEAKHPMAQRFLQLG-
'Setaria italica XP_004966143'        -------------------------------------------------------KIRVR-ELRRQAAGGQEILRGVDLDVPRGVVMGVIGPSGSGKSTLLRALN--RLWEPAPGAVLLDGADICGLDVRTLRRRVGMLFQQPAMFEGTVAYNVRYGPKLRGKELTEAEVQNLLNLADLDPAMSSKPATELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDTIVRLNKTRGLTAVIVSHSVKQIQRIADLVCLLVAGEIVEVLPPSELSSAKHPMARRFLELS-
'Solanum tuberosum XP_006366268'      --------------------------------------------DIKGAAET---KIEIRGLNKVSDK-GDSILKSVRVDIPRGVIMGIIGPSGSGKSTILRALN--RLWEPPKNTVFLDGTDICDLDVLCLRRKVGMLFQLPVLFEGTVADNIRYGPKLKGKKLSDNEVYKLLTLADLDSSFFYKSGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVLVKLRKDQMMTIVIVSHSIKQIQRIADIVCLLVDGEIVEIIKPDQLSEAKHPMALRFLQLS-
Triticum_uraatu_EMS52544              ---------------------------------------------------------------------------------------------------------------------------------------------------GTVADNVRYGPRLRGETLTDAQVEELLGLSDLDPALASRPASELSVGQAQRVALARTLANDPEVLLLDEPTSALDPISTQNIEEAIVRLKKARGITTVIVSHSVRQIQRIADLVCLVVDGVVVEVLPPSDLSQAKHLMARRFLELS-
Vitis_vinifera_CAN70271               -----------------------------------------------------KPKFRVRNLIKVSES-GEAILRGIDVDVPKGAIVGVIGPSGSGKSTLLRVLN--RLWEPPSGTVYLDGTDIRELDVLGLRRKVGMLFQLPVLFEGTVADNIRYGPQLRGKKLTDNEVLKLLTLADLDSSFMKKTGGELSVGQAQRVALARTLANEPEVLLLDEPTSALDPISTQNIEDVIVKLKKSRGMTIVMVSHSIKQIQRIADRVCLLVDGEITEVLEPDKLSEARHPMALRFLQLSS
;
END;

[ The following blocks are output data for analysis step 15402 ]
BEGIN TREES;
      TITLE Fagopyrum_STAR1;
      LINK TAXA = TaxaForAnalysisStep15402;
      TREE STAR1 = [&R] (((((Fagopyrum_tataricum_STOL1,Fagopyrum_tataricum_STOL2),'Populus trichocarpa XP_002325227'),(Vitis_vinifera_CAN70271,'Solanum tuberosum XP_006366268')),Arabidopsis_thaliana_STAR1),('Setaria italica XP_004966143',((Aegilops_tauschii_EMT05468,Triticum_uraatu_EMS52544),Oryza_sativa_Japonica_Group_STAR1)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr79951]


END;