#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 01, 2025; 7:57 GMT

TreeBASE (cc) 1994-2008

Study reference:
Feng Z.H., Hua W., Fang Z.Y., Wen Z.J., Jie Z.F., & Feng H.C. 2015. Genome-wide transcriptomic
and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms
in the aluminum-accumulating species buckwheat (Fagopyrum tataricum). BioMed
Central, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16751]

[ The following blocks are input data for analysis step 15403 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep15403;
        DIMENSIONS NTAX=7;
        TAXLABELS
            Arabidopsis_thaliana_ALS3
            Fagopyrum_tataricum_STAR2
            Oryza_sativa_Japonica_Group_STAR2
            'Sorghum bicolor XP_002440497'
            'Theobroma cacao XP_007027163'
            'Vitis vinifera XP_002274040'
            'Zea mays NP_001146856'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M25149]

	TITLE Fagopyrum_STAR2;
	LINK TAXA = TaxaForAnalysisStep15403;
	DIMENSIONS NCHAR=286;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                             10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280      ]
[                                              .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Arabidopsis_thaliana_ALS3             ------------MDLKWDDFFNDYEWLIVFLKGMVKPAAALVVVLLAVILSYSQNLSLEGEMIYSVSRSFLQLSVIGFVLQFIFNQENSGWIILAYLFMVSVAGYTAGQRARHVPRGKYVAGLSILAGTSITMFLLVLLNVFPFTPRYMIPIAGMLVGNAMTVTGVTMKQLRDDIKMQLNLVETALALGATPRQATLQQVKRALVISLSPVLDSCKTVGLISLPGAMTGMIMGGASPLEAIQLQIVVMNMMVGAATVSSITSTYLCWPSFFTKAYQLQTHVFSSD-
Fagopyrum_tataricum_STAR2             -------------ISQVRLIKMDWGWLSEFMKGMLKPVAALTVVLMAVALSYLQRLDLQGEMIYSIFRAFLQLSIIGFVLQFIFNQQNIAWILLAYLFMVSVAGYTAGKRAKHVPKGMYVAGASILAGTSVTMFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKSQTNLVETALALGATPRQAVLQNMKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQLQIIVMNMLIGASTFSSIMSTYLCWPNFFTKTYQLESKVFSSD-
Oryza_sativa_Japonica_Group_STAR2     MMASMAALLQRLLVVVNQVDPGAPGFWREFLVGMLKPVAATAVVAMAVALSFTQRLGLEGEMLYAMARAFLQLSVIGFVLQFIFTQKSAAWILLAYLFMVTVAGYTAGQRARHVPRGKHIAAVSILAGTSVTMALLVALRVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVGMQRGVVETALALGATPRQATARQVRRSLVIALSPVIDNAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTGAFQLNDAVFAAD-
'Sorghum bicolor XP_002440497'        ----MAAFLD--QLVAGQVDPGAPGFWRDFLIGMLKPVAATAVVAMAVALSFSQRLGLEGEMLYAIARAFLQLSVIGFVLQFIFTQKNVLWILLAYLFMVTVAGYTAGQRAKQVPRGKYIACVSILVGTAITMFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVKIQRNLVETALALGATPRQATLQQVKRSLVIALSPVIDSAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGAATVSSILSTYLCWPAFFTKAFQLEDKVFA---
'Theobroma cacao XP_007027163'        ---------------------MDWDWLFEFLKGMVKPVAALSVVLMAVLLSFMQKLGLEKEMIYSILRAFLQLSVIGFVLQFIFNQENSGWIVLAYLFMVSVAGYTAGQRAKHVPRGKYVAGISILAGTAVTMFLLVILNVFPFTPRYVIPVAGMMVGNAMTVTGVTMKRLRDDIKIQMNLVETALALGATPRQATLEQVKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPIEAIHLQIVVMNMLIGASTVSSIMSTYLCWPAFFTKAYQLETKVFSSD-
'Vitis vinifera XP_002274040'         ---------------------MDFDWVMEFLRGMVKPVAALAVVLMAVALSYFQKLGLEGEMVYSILRAFLQLSVIGFVLQFIFTQANSGWILLVYFFMVSVAGYTAGQRAKHVPRGKYVAGASILAGTAVTLFLLVVLNVFPFTPRYIIPVAGMMVGNAMTVTGVTMKRLRDDIKIQLNLVETALALGATPRQATLQQMKRALVIALSPVLDNAKTVGLISLPGAMTGLIMGGASPLEAIQVQIVVMNMLVGASTVSSIMSTYLCWPAFFTKAYQLETHVFRSD-
'Zea mays NP_001146856'               ------------------------GFWRDFLVGMLKPAAATAVVAMAVGLSFSQRLGLEGEMLYAIARAFLQLSAIGFVLQFIFAQKNALWILLAYLFMVTVAGYTAGQRARQVPRGKRIACVSILVGTAVTMLLLVLLDVFPFTPRYIIPVAGMMVGNAMTVTGVTMKKLREDVKIQRNLVETALALGATPRQATLQQVKRSLVIALSPVIDSAKTVGLIALPGAMTGLIMGGASPLEAIQLQIVVMNMLMGASTVSSILSTYLCWPAFFTKAFQLDDRVFAD--
;
END;

[ The following blocks are output data for analysis step 15403 ]
BEGIN TREES;
      TITLE Fagopyrum_STAR2;
      LINK TAXA = TaxaForAnalysisStep15403;
      TREE STAR2 = [&R] (((Fagopyrum_tataricum_STAR2,('Theobroma cacao XP_007027163','Vitis vinifera XP_002274040')),Arabidopsis_thaliana_ALS3),(Oryza_sativa_Japonica_Group_STAR2,('Zea mays NP_001146856','Sorghum bicolor XP_002440497')));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr79950]


END;