#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 10, 2024; 2:41 GMT TreeBASE (cc) 1994-2008 Study reference: Laflamme G., & Broders K.D. 2014. Taxonomic status of Lophophacidium dooksii and Canavirgella banfieldii, causal agents of a white pine needle disease. Mycologia, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16389] [ The following blocks are input data for analysis step 15532 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15532; DIMENSIONS NTAX=40; TAXLABELS Canavirgella_banfieldii_KF889651 Canavirgella_banfieldii_KF889653 Coccomyces_australis_EF191241 Coccomyces_mucronatus_GU138732 Colpoma_quercinum_U92306 Davisomycella_medusa_AY465525 Dothidea_sambuci_AY930109 Hypoderma_minterii_JX232416 Hypoderma_rubi_GU138737 Lirula_macrospora_HQ902159 Lophodermella_arcuata_AY465518 Lophodermium_australe_FJ861971 Lophodermium_autumnale_HQ902158 Lophodermium_baculiferum_AY100655 Lophodermium_cathaya_HQ992810 Lophodermium_conigenum_AY100645 Lophodermium_conigenum_FJ861975 Lophodermium_gamundiae_EF191239 Lophodermium_juniperinum_JQ313997 Lophodermium_molitoris_AY100659 Lophodermium_piceae_AY971733 Lophodermium_piceae_AY971734 'Lophodermium pini-mugonis JF332165 ' Lophophacidium_dooksii_KF88965 Lophophacidium_dooksii_KF889652 Lophophacidium_dooksii_KF889654 Lophophacidium_dooksii_KF889670 Lophophacidium_dooksii_KF8896710 Lophophacidium_dooksii_KF889673 Lophophacidium_dooksii_KF889676 Lophophacidium_dooksii_KF889682 Meloderma_desmazieresii_AF426056 Monilinia_fructicola_JN176564 Phyllactinia_moricola_D84385 Rhytisma_acerinum_GQ253100 Rhytisma_salicinum_AY465515 Therrya_fuckelii_JF793672 Therrya_pini_JF793677 Tryblidiopsis_pinastri_JF793678 Uncinula_necator_AF049332 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M30237] TITLE Rhytimatales_ITS; LINK TAXA = TaxaForAnalysisStep15532; DIMENSIONS NCHAR=527; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Canavirgella_banfieldii_KF889651 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Canavirgella_banfieldii_KF889653 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Coccomyces_australis_EF191241 -----------TCATTAAAGAATCGGT-GAC-CCTTGCGGTCCCATTCTCA-CCCTTTG-TATACCA--AACTT-AGTTGCTTTGGC----------TGGCCTTGC--------GGCCGGCCAGAGGACAC--AAACCCTTGAATCT---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCA------G-CTT-GGTATTGGGCTCGCCCTT------CATGGGCCTGCCTCAAAATCAGTGGCGGC-TCCGTCCAGTC-TCAAGCGCAGTAA---TAC--TCGTCGCTTGTTAGG--CTTGGTCGGTGGCCTGCTAACAACCCCCACT--------------- Coccomyces_mucronatus_GU138732 -----------TCATTAAAGAATAACG--GC-CTCGCGGCT-ATATTCTCA-CCCTTTG-TATACCA--ACCT-TTGTTGCTTTGGCG---GGCCCCCGGCTCCGGCTGGACCGCGCCCGCCAGAGGACCT--AAACTCTTGAATCT---CCGCTGTCTGAGTAC--TATG---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACGTCCCCCA------G-CGT-GGTGTTGGGCTCGCCCCG------TAG-GGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCGGTCCCCTAAGCGTAGTAA---TAC--TCGTCGCTT-CTGGG-CCTCCGGCGGAGGCTGGCCAGC-AACCCCCACT-------------- Colpoma_quercinum_U92306 ------------CATTAAAGAATACAG--GC-TTCGCGGCCGCTAT{CT}CTCC-TTCTTTG-TATACCA--AACT-TTGTTGCTTTGGCA---GGCCCCTGGCTTCGGCTGGATAGCGCCTGCCAGAGGACCA--AAACCCTTGAATCT---TTGCCGTCTGAGTAT--TATA---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCCTGGTATTCCGGGGAGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCGCCCTG------TAG-GGCTTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACCC-TAAGCGTAGTAA---TAC--TTGT-GCTT-TTGGG-CTTG-GGCGGGCGCTCGCTAGC-AACCCCCACC-------------- Davisomycella_medusa_AY465525 ------------CATTAAGGATACAAG--GC-TCTCGGGTC-GTATTCTCA-CCCTGTG-CATATCG--AAACCTCGTTGCCCTGGC------------GCTGCGGC------------GCCAGAGGAATC--AAACCCTGGAATCT---CTGCTGTCTGAGTAC--TATG---TAAT--AGTCAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTGCTGGTATCCCAGCAGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCCCC-----CCTGGGGCCTGCCTCGAAATCAGTGGCGGCAACAGTCCTGGCCTCAAGCGCAGTGA---TCT--ACGACGCTTGCTGGTGAGGGCTGCG-GCCCCAGCAA-CCCCCCCCCACCATCAAGGTTGAC-- Dothidea_sambuci_AY930109 ---AACCCGGACAATCCCCTTATACTTCCCA-CCCTTTGTTGTTATAACTACCTTGTTGCTTTGGCGGGACCGTTCGGTCATCCGAGC---GCACCAGTCTTCGGACAGGTGAGCGCCTGCCAGAGTCCAACCAAACTCTTGTTTTTAACCAGTCGTCTGAGTATAAAATTT--TAATTAAATTAAAA-CTTTCAACAACGGATCTCTTGGTTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTA-CACCAC--TCAAG---CACC------G-CTT-GGTATTGGGCATCGTCCGCCGAAAGGCGGGCGTGCCTCGAAGACCTCGGCGGGGTTTCTCCAACT-TCGGGCGTAGTAGAGTTAAATCGAACGTCTTATAAGCTTGGTGGGACTCCATTGCCGTTAAACCTTTTAT-------------- Hypoderma_minterii_JX232416 --------------CTTTTTAAGCAGTGGAC----TCGTGCTCGTTCTAGG-ACCTTTG-CATACCA--AACTTGTGTTGCTTTGGC----------CGGCCTCCG--------GGCCGGCCGGAGGTGTT--CAACCCTTGAATTA---GTGATGTCTGAGTAT--TATTG--TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CCTG------G-CTT-GGTGTTGGGCTCGCCCTG------TCAGGGTCTGCCTCGAAATCAGTGGCGGC-CCCGTCCGATC-TCAAGCGTAGTAA---TGC--TATCCGCTTGTT-GG--TCTGGATGGAAGCTTGCCAGCAACCCCCAAC--------------- Hypoderma_rubi_GU138737 -----------TCATTAAAGAATACAG--GC-TTCACGGCCGCTATTCTCA-CCCTTTG-TATACAA--AAAC-TTGTTGCTTTGGCA---GGCCTCCGGCGCACGCTGGGCTGCGCCTGCCAGAGGATCT--AAACCCTAGAATCA---TTGCTGTCTGAGTAC--TACT---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTTTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCATATTGCGCCTCCTGGTATTCCGGGAGGCATGCCTGTTTGAGCGTCATTA-CAACCC--TCACG---CTTC------G-CGT-GGTGTTGGGCTCGCCCGC------TTG-GGCCTGCCTCAAAATCAGTGGCGGC-GACATCGAACCCCTAAGCGTAGTAA---TAC--TCGCAGCTT-CTGGG-AGCC-GGTGGTAGCTTGCTAGCAACCCCCCAA--------------- Lirula_macrospora_HQ902159 TCATTAGAGAAAAAAGGGGGGTGGACGCCGC-CCCCATTCT------CACACC-CTGTG-TCTACT----TACCCTGTTGCTTTGGCG---G--CGCCGGCTCCGGCCGGGCAA-GTCCGTCAAGGGCCC----AACTCCTGCATCT---CTGTGGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CGCA------G-CTT-GGTGTTGGGCTCGCCCTGTAG-------GGCCTGCCTCAAAGTCAGTGGCGGC-GCCGTCCGATCCC-AAGCGTAGTAC---TAC--TCGCCGCTGG-GGGC--ATCGGGCGATGGCCTGCCAGCAACCCCCACC--------------- Lophodermella_arcuata_AY465518 TTATT-GAGCA-TGG-CGGGGTCAAACCCGC-CTGGTAACT------CACACC-TCTTG-TCTACC----CTCTCTGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGG-CAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGAGCAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CA?CCC--TCAAG---CTCT------G-CTT-GGTCTTGGGCTGGCCCGGAAG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACTGCCTGCCCCCTAAGCGTA?TAC---TTCCACTCTCGCTTCTGGG---CGTGGGCACCAGCCTGCCAGCGAACCCCCCC--------------- Lophodermium_australe_FJ861971 -----------TCATTAAAGAATACAGGCTT-CACGGCCGCTATATTCTCA-CCCTTTG-TTAACT---ACACTTTGTTGCCTTGGC------------GCCTAGC-------------GCCAGTGGACCA--AAACTCTTGAATCA---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCCCG-------TAGGGCCTGCCTCAAAATCAGTGGCGGCCACTGTCCGACCCTTCAGCGCAGTAC---TAC--TCGCCGCTCGTAGG--AGGATGGGAAG--CCGTTAT-ACAACCCCCACC-------------- Lophodermium_autumnale_HQ902158 ----TGCTTCGGCAGCGCTGGACCGTGGCTG-TGAGTATTGTCGAAAGGAGTAACTCCG-CCAGCCTGCGAGGGCTGTTAAGCGCGCA---TCCCAATATTCCCCTGCGG---CCAACTGTCGGGGACCTCC-AACTCTTTGAATTT---TTGCAGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCACTCCCTGGCATTCCGGGGAGTATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTGGCCCCG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-TTAAGCGTAGTAA---TAC--ACGTCGCTTTTGGG---CTCCGGCGGTGGCTTGCCAGCAGCCCCCACA--------------- Lophodermium_baculiferum_AY100655 -----------------AAGAATA-CACGGC-CTCACGGCCC-TATTCTCACCCTT-TG-TATACT---TAACTTTGTTGCTTTGGC------------G--GAAAC------------GTCAGAGGACCG--AAACCCTTGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGCTCGCCTCC---------GGGCTTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-TTAAGCGCAGTAA---TAC--TCGCCGCTTGTAGAATCAGGAGGATAG--CTTGCTA-AGAACCCCCATC-------------- Lophodermium_cathaya_HQ992810 ---------------GGGCAAAGAGCTGGGA-CTTCGGGCC-CTATTCTCA-CCCTTTG-TCTACC---ACGCTTTGTTGCCTTGGC------------GCTTCGGC------------GCCAGCGGAACG--AAACCCTGGAATCA---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAATCAGTGGCGGCCACCGTCCGACC-TTCAGCGCAGTAC---TAC--TCGTCGCTGTGAGGGAGGGCCGAAG----CCGTCATGACAACCCCCATT-------------- Lophodermium_conigenum_AY100645 -----------------CAGAAGGATATCGC-CCTCGGGCTTCTCTTCTCA-CCCTTTG-TTTACC---ACACGTAGTTGCCTTGGC------------GCTCCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTCTGAGTAC--TATT---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGCCGCTGTTAGGGAAGGGCAGCAAGGGCCGTCAT-ACAACCCCCACA-------------- Lophodermium_conigenum_FJ861975 CTGCGGAAGGATCATTACAGAAGGATATCGC-CCTCGGGCTTCTCTTCTCAACCCTTTG-TTTACC---ACACGTAGTTGCCTTGGC------------GCTCCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTCTGAGTAC--TATT---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCGGCCTGCCCGGGGCTCGCTTCAAAGTCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGCCGCTGTTAGGGAAGGGTAGCAAGGGCCGTCAT-ACAACCCCCACA-------------- Lophodermium_gamundiae_EF191239 -----------TCATTACAGAATCGGT-GAC--CTCGCGGTCCCATTCTCA-CCCTTTG-TATACCA--AACCTCCGTTGCTTTGGC----------TGGCCCTCGC------GGGCCCGCCAGAGGAGTC--AAACCCGTGAATTT---TTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCG------G-CTT-GGTATTGGGCTGGCCCCT------TGTGGGCCTGCCTGGAAATCAGTGGCGGC-TCCGTCCGGTC-TCAAGCGCAGTAA---CAC--TCGTCGCTTGTTAGG--CTTGGTCGGCAGCCTGCCAACAACCCCCACT--------------- Lophodermium_juniperinum_JQ313997 CTGCGGAAGGATCATTAAAGAATAACA-CGC-CTCCGGGCG-CTATTCTCA-CCCTTTG-CTTACC---ATACTTTGTTGCCTTGGC------------GCACAGCC------------GCCAGTGGATCA--AAACCCGTGAATCA---TTGCTGTCTGAGTAC--TACA---CAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCTTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCC------G-CTT-GGTGTTGGGCTCGCCTT---CCTCCGAAGGCCTGCCTCAAAATCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGTCGCTGCAAGGGAAGGGTGGCAAGCGCCGTCAT-ACAACCCCCACA-------------- Lophodermium_molitoris_AY100659 -----------------AAGAATAACAGGGT-CTTCGGGCCCCTATTCACACCCTTATG-TCTACC---TAACTTTGTTGCTTTGGC------------G--GAAAC------------GTCAGAGGACCT--AAACTCTAGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTATTGGGTTCGCCTCC---------GGGCTTACCTCAAAATCAGTGGCGGC-CTCGGCTGACA-TCAAGCGTAGTAA---TAC--TCGTCGCTTGGAGAATCAGTCGTAAAG--CCTGCTA-GCAACCCCCACA-------------- Lophodermium_piceae_AY971733 ------------CATTAAAGAATACAA--GG-CTCTCGAGCCCTATTCTCA-CCCTTTG-TTTATT----AACTTTGTTGCTTTGGCA---GGCCTCCGGCTTCGGCTGGGTCGCGTCTGTCAGAGGCCTA----ACTCTTGAATCT---CTGCTGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-CTAAGCGTAGTAC---TAC--TCGCCGCTTCTGGAA---TCGGTCGGCTGCCTGCCAGCCTAACCCCC---------------- Lophodermium_piceae_AY971734 ------------CATTAAAGAATACAA--GG-CTCTCGAGCCCTATTCTCA-CCCTTTG-TTTATT----AACTTTGTTGCTTTGGCA---GGCCTCCGGCTTCGGCTGGGTCGCGTCTGTCAGAGGCCTA----ACTCTTGAATCT---CTGCTGTCTGAGTAC--TATC---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTG-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-ACCGTCTGACC-CTAAGCGTAGTAC---TAC--TCGCCGCTTCTGGAA---TCGGTCGGCTGCCTGCCAGCCTAACCCCC---------------- 'Lophodermium pini-mugonis JF332165 ' ----TGCTTCGGCAGCTCTGCCGTGCGGCAG-TCGGTGGCCCCGTTAAGGGAGGCAATG-TTAACC-------ATCCTCCCCCACGGG---TCATTA-ACCGCCCGCCGG---TTATCTGTCAGAGGACCCT-AAACTCTTGAATCT---TTGAAGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCTCCCTGGCATTCCGGGGAGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGGGCTCGCCCTC-------TAGGGCCTGCCTCAAAGTCAGTGGCGGC-GCCGTCTGACC-CTAAGCGTAGTAA---TAC--TTCTCGCTTTTGGG---CTTGGACGGTT----------------------------------- Lophophacidium_dooksii_KF88965 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889652 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889654 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCCGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889670 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF8896710 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCGGAAG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889673 TTATT-GAGCAATGGGCGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTCCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889676 TTATG-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTTTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Lophophacidium_dooksii_KF889682 TTATT-GAGCAATGG-CGGGGTGACACCCGC-CTGGTAACT------CACACCCTCTTG-TCTACC----TTCTCCGTTGCTTTGGCA---GGCCTCCGGCTCCGGCTGGGCAGCGCCTGCCAGGGGACCT--AAACTCGTGAATCA---GTGATGTCTGCGCAC--TATC---TAAT--AGTCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCGGAGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCAAG---CTCC------G-CTT-GGTCTTGGGCTGGCCCTTTCG-------GGCCAGCCTGGAAATCAGTGGCGGC-ACGGCCCGACCCCTAAGCGGAGTAC---TTCCATCCTCGCTTCTGGG---CTTGGGCCACAGCCTGCCAGCAACCCCCCCC--------------- Meloderma_desmazieresii_AF426056 ------------------------------------------------------------TTTACC---ACACGTAGTTGCCTTGGC------------GCACCGC-------------GCCAGTGGATCG--AAACTCCTGAATCA---TTGCCGTGTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCTCCCGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CTCT------G-CTT-GGTGTTGAGCCCGCCCCG-CTTACCCGGGGCTCGCTTCAAAATCAGTGGCGGCCGCCGTCCGACC-TTCAGCGCAGTAA---TGC--TCGTCGCTGGTAGGGAAGGGCAGCAAGGGCCGTCAT-CCAACCCCCACA-------------- Monilinia_fructicola_JN176564 ---------------AAGGATCATTACAGAG--TTCATGCCCGAAAGGGTAGACCTCCC-ACCCTTGTGTATTATTAC-TTTGTTGCTTTGGCGAGCTGCCTTCGGGCCTTGTATGCTCGCCAGAGGA--TAATTAAACTCTTTTTATTAATGTCGTCTGAGT-----ACTATATAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTT-CAACCC--TCAAGCAC----------AGCTT-GGTATTGAGTCTATGTCAGTAAT-----GGCAGGCTCTAAAATCAGTGGCGGCGCCGCTG--GGTCCTGAACGTAGTAA---TAT--CTCTCGTTACAGGT---TCTCAGTGTGCTTCTGCCAAAACCCAAATTTTCTAT---------- Phyllactinia_moricola_D84385 ---CGACCCTCCCACCCGTGTCGATAAAAACGTCTGTTGCTTTGGTAGGCCGGGGCCCG-CCTGGCGGATCCCGCTG--GCCTTTGA----------------TGGCTGGAGCGTGCCTGCCAGAGAAAGTTGGACAACTCGTGTGATTGATGAAGTCTGAGCAACCAAGTGGGAAATT-AGTTAAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATCTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGG{CG}ATGCCTGTTCGAGCGTCAAAA-CAACCCC-TCAAGTCGCTCT------GGCTT-GGTCTTGGGGCC-CGCCCGCGACAGCGTGGCGGCCCTTAAATCTAGTGGCGGTGCCGGTG-GTGCTCTCCGTGTAGTCA---CGT---TCTCGCGACAGGG---CAGCACTGG-ACCCAGCCAAAAGACAACCTGTG------------- Rhytisma_acerinum_GQ253100 CTGCGGAAGGATCATTACCGAGTTGGCCGAC-GCCCCGCGTCCCGATTCCA-CCCTTGA-TGTACCG--AACCACTGTTGCTTTGGC----------CGGCCCCCG--------GGCCGGCCAGAGGCCCCC-AAACCCCGGAATCC---GTGCCGTCTGAGTAC--CACG---CAAT--CGCGAAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCTTTCCAGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CCCC------GGCTT-GGTCTTGGGCCCGCCATC------CATGG-CCCGCCTCAAACGCAGTGGCGGC-CCCGTCCAGTC-TCAAGCGTAGTAC---TAC--TCGTCGCTTGTCGGG--CTCGGGCGGCGGCCGGCCAGCAAGCCCCTCA--------------- Rhytisma_salicinum_AY465515 ------------CATTAAAGAATTGGT-GAT-GCTCTGCGTCCCATTCTCA-CCCTATG-TTTATTA--AACCTCAGTTGCTTTGGC----------CGTCATACA--------G-CCGGCCAAAGGACCCT-GAACTCTTGAATTA---TTGCTGTCTGAGTATA-TATAA--CAAT--CGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCAAG---CAAC------G-CTT-GATGTTAGGCCTGCCTTG------ATTGG-CGCGCCCTAAAAGAAGTGGCGGC-TCCGTCCAGTC-TCAAGCGTAGTAA---TAC--TCGCCACTTGTTAGG--CTTGGGCGAGAGCTTGCCAGAGAACCCCCAA--------------- Therrya_fuckelii_JF793672 ------------CATTAATGAATATCG--GC-CTCGCGGCC-CTATTCTCA-CCCTGTG-TCTACCT--AACT-TTGTTGCTTTGGCA---GGCCCCTGGCTTCGGCTGGACTGCGCCTGCCAGAGGATGT--AAACTCTGGAATCT---CTGCTGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGCGAATTGCAGAATTCAGTGAGTCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTTCGAGCGTCATTAACAACCC--TCACG---CCCT------G-CGT-G-TGTTGGGCTCCGCCTG------CAAAGGCCGGCCTCAAAGTCAGTGGCGGC-ACTGCTGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTCTTGGG-CTTCCAGCAGCGGCTTGCCAGCCAACCCCCACC-------------- Therrya_pini_JF793677 ------------CATTAAAGAATATCG--GC-CTCACGGCC-CTGTTCTCA-CCCAATG-TATACCC--AACTCTTGTTGCTTTGGCA---GGCCCCTGGCTCCGGCTGGATCGCGCCTGCCAGAGGACGT--AAACTCTGGAATCT---TTGCCGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCCGCCTT------CGA-GGCGGGCCTCAAAGTCAGTGGCGGC-ACTGCCGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTGTTGGG-CTTCCGGCAGCAGCCTGCCAGC-AACCCCCATT-------------- Tryblidiopsis_pinastri_JF793678 -----------TCATTAAAGAATATCG--GC-CTCACGGCC-CTGTTCTCA-CCCAATG-TATACCC--AACTCTTGTTGCTTTGGCA---GGCCCCTGGCTCCGGCTGGATCGCGCCTGCCAGAGGACGT--AAACTCTGGAATCT---TTGCCGTCTGAGTAC--TATA---TAAT--AGTTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTTCGAGCGTCATTA-CAACCC--TCACG---CCCA------G-CGT-GGTATTGGGCTCCGCCTT------CGA-GGCGGGCCTCAAAGTCAGTGGCGGC-ACTGCCGGACCC-TAAGCGTAGTAC---TAC--TCGTCGCTTGTTGGG-CTTCCGGCAGCAGCCTGCCAGC-AACCCCCATT-------------- Uncinula_necator_AF049332 ---CGACCCTCCCACCCGTGTCGATATGTAT-TTTGTTGCTTTGGCGGGCGGGTTTGCG-CCCGTTCGCGTCCGCTGTGGCCTGGGGGAGCGCCCACCGCGTTCGGCTGGAGCGTGCCCGCCAGAGACCTCATCCAAACTCACGTTGTC-ATGTAGTCTAAGC--TTTATTAAGTAATT-GAT-AAAA-CTTTCAACAACGGATCTCTTGGCTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTTAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATGCCTGTTCGAGCGTCATAA-CACCCCCCTCAAGCTGCCCTTGTGGTGGCTTCGGTGTTGGGGCT-CGTC-GCAGTTTTGCGGTGGCCCTTAAAGACAGTGGCCCTCCCCGCGTGGGCTCTACGCGTAGTAA---CTTGTTCCTCGCGACAGAG---TGACGCTCGTGATCAGCCAGA--ACCACC----------------- ; END; [ The following blocks are output data for analysis step 15532 ] BEGIN TREES; TITLE Rhytimatales_NJ; LINK TAXA = TaxaForAnalysisStep15532; TREE PAUP_1 = [&R] ((Monilinia_fructicola_JN176564:0.652732,(Phyllactinia_moricola_D84385:0.197491,Uncinula_necator_AF049332:0.193801):0.280727):0.2063335,(Dothidea_sambuci_AY930109:1.041636,(('Lophodermium pini-mugonis JF332165 ':0.113461,Lophodermium_autumnale_HQ902158:0.232334):0.227435,((Hypoderma_minterii_JX232416:0.220541,((Lophodermium_gamundiae_EF191239:0.044948,Coccomyces_australis_EF191241:0.02856):0.04439,(Rhytisma_salicinum_AY465515:0.148433,Rhytisma_acerinum_GQ253100:0.186043):0.035937):0.006705):0.090118,((Lirula_macrospora_HQ902159:0.134583,(Lophodermella_arcuata_AY465518:0.030732,(Lophophacidium_dooksii_KF8896710:1.0E-8,((Lophophacidium_dooksii_KF889676:0.00249,(Canavirgella_banfieldii_KF889653:1.0E-8,Lophophacidium_dooksii_KF88965:1.0E-8):1.0E-8):1.0E-8,((Lophophacidium_dooksii_KF889682:1.0E-8,(Lophophacidium_dooksii_KF889670:1.0E-8,Lophophacidium_dooksii_KF889673:1.0E-8):0.002475):0.002473,(Lophophacidium_dooksii_KF889654:0.002482,(Canavirgella_banfieldii_KF889651:1.0E-8,Lophophacidium_dooksii_KF889652:1.0E-8):1.0E-8):0.002474):1.0E-8):0.010218):0.022051):0.129944):0.117824,(((Lophodermium_piceae_AY971733:1.0E-8,Lophodermium_piceae_AY971734:1.0E-8):0.081096,(Lophodermium_baculiferum_AY100655:0.041365,Lophodermium_molitoris_AY100659:0.075965):0.08647):0.021545,((Lophodermium_cathaya_HQ992810:0.085062,(Lophodermium_australe_FJ861971:0.083568,(Lophodermium_juniperinum_JQ313997:0.05393,(Meloderma_desmazieresii_AF426056:0.023056,(Lophodermium_conigenum_AY100645:0.002528,Lophodermium_conigenum_FJ861975:0.002622):0.022552):0.076296):0.019863):0.015277):0.095147,(Davisomycella_medusa_AY465525:0.276468,(Hypoderma_rubi_GU138737:0.141305,(Coccomyces_mucronatus_GU138732:0.054793,(Colpoma_quercinum_U92306:0.076756,(Therrya_fuckelii_JF793672:0.038684,(Therrya_pini_JF793677:1.0E-8,Tryblidiopsis_pinastri_JF793678:1.0E-8):0.045597):0.048056):2.29222E-7):0.028402):0.030335):0.003605):0.00201):0.023302):0.001185):0.120778):0.044199):0.2063335); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85870] END;