#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 11, 2025; 13:47 GMT

TreeBASE (cc) 1994-2008

Study reference:
Derelle R., Torruella G., Klimeš V., Brinkmann H., Kim E., Vlček &., Lang B.F.,
& EliᚠM. 2015. Bacterial proteins pinpoint a single eukaryotic root. Proceedings
of the National Academy of Sciences of the United States of America, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S16424]

[ The following blocks are input data for analysis step 15547 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep15547;
        DIMENSIONS NTAX=0;
        TAXLABELS
            ;
END;

[ The following blocks are output data for analysis step 15547 ]
BEGIN TREES;
      TITLE 'Eukaryotic root consensus CAT-GTR result from ALPHA-PROT filtered dataset';
      LINK TAXA = TaxaForAnalysisStep15547;
      TREE Fig._1L = [&R] ((((Malawimonas_californiana:0.209927,Malawimonas_jakobiformis:0.176787):0.339381,(Collodictyon_triciliatum:0.443782,((Acanthamoeba_castellanii:0.229814,Stereomyxa_ramosa:0.37297):0.229987,(Filamoeba_nolandi:0.386935,(Physarum_polycephalum:0.302086,(Dictyostelium_discoideum:0.150412,Polysphondylium_pallidum:0.113036):0.320413):0.117817):0.069533):0.075662):0.019851):0.016939,(Thecamonas_trahens:0.711486,(((Gonapodya_prolifera:0.280967,(Batrachochytrium_dendrobatidis:0.174416,Spizellomyces_punctatus:0.100429):0.092988):0.03402,((Mortierella_verticillata:0.190197,Rhizopus_oryzae:0.24274):0.025215,((Phanerochaete_chrysosporium:0.206038,Ustilago_maydis:0.21019):0.141337,(Tuber_melanosporum:0.244817,Yarrowia_lipolytica:0.278266):0.169636):0.059534):0.052989):0.160917,(Capsaspora_owczarzaki:0.276556,((Monosiga_ovata:0.249166,(Monosiga_brevicollis:0.177017,Salpingoeca_rosetta:0.176534):0.13412):0.122789,((Amphimedon_queenslandica:0.243458,Ephydatia_muelleri:0.222454):0.105193,((Acropora_digitifera:0.116277,Nematostella_vectensis:0.1212):0.096586,(Homo_sapiens:0.205226,Lottia_gigantea:0.243333):0.045358):0.027621):0.094392):0.039933):0.093605):0.087557):0.039559):0.0097585,((((Maricaulis_maris:0.265331,Parvularcula_bermudensis:0.259966):0.0942,(Parvibaculum_lavamentivorans:0.207871,Starkeya_novella:0.241324):0.039084):0.106432,((Magnetospirillum_magneticum:0.204426,Rhodospirillum_rubrum:0.22111):0.060122,((Azospirillum_sp:0.138073,Rhodospirillum_centenum:0.169054):0.076905,(Granulibacter_bethesdensis:0.184018,Roseomonas_cervicalis:0.186928):0.148638):0.021915):0.04477):0.389822,((((Acrasis_kona:0.3775,Naegleria_gruberi:0.371499):0.431131,(Eutreptiella_gymnastica:0.589132,Leishmania_major:0.831043):0.387499):0.129356,(Andalucia_godoyi:0.382492,(Reclinomonas_americana:0.221506,(Jakoba_libera:0.300784,Seculamonas_ecuadoriensis:0.163434):0.039098):0.110867):0.038443):0.051331,(((Goniomonas_avonlea:0.344027,(Cryptomonas_paramecium:0.135613,Guillardia_theta:0.15704):0.291874):0.15229,((Chondrus_crispus:0.316701,Galdieria_sulphuraria:0.29737):0.192436,((Physcomitrella_patens:0.115002,(Arabidopsis_thaliana:0.080146,Oryza_sativa:0.083059):0.106439):0.129263,((Chlorella_variabilis:0.241933,Tetraselmis_astigmatica:0.217991):0.058454,(Micromonas_sp:0.122997,Ostreococcus_lucimarinus:0.171971):0.140001):0.043144):0.126412):0.030128):0.017323,((Bigelowiella_natans:0.568827,((Aplanochytrium_kerguelense:0.23119,Schizochytrium_aggregatum:0.211937):0.179341,((Phytophthora_infestans:0.139348,Saprolegnia_parasitica:0.126148):0.207923,((Bolidomonas_pacifica:0.200606,Thalassiosira_pseudonana:0.270684):0.155743,(Ectocarpus_siliculosus:0.316322,Heterosigma_akashiwo:0.226205):0.040618):0.089324):0.057873):0.096607):0.026227,((Oxytricha_trifallax:0.485011,(Platyophrya_macrostoma:0.281611,(Paramecium_tetraurelia:0.295876,Tetrahymena_thermophila:0.381348):0.116991):0.142569):0.35799,((Plasmodium_falciparum:0.636646,Toxoplasma_gondii:0.280487):0.239319,(Perkinsus_marinus:0.399663,(Karenia_brevis:0.208343,Lingulodinium_polyedrum:0.104318):0.217529):0.15819):0.201117):0.140142):0.033242):0.024232):0.015371):0.0097585);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85440]


END;