#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on March 30, 2026; 17:09 GMT TreeBASE (cc) 1994-2008 Study reference: Florez S.L., Erwin R.L., Maximova S.N., Guiltinan M.J., & Curtis W.R. 2015. Enhanced Somatic embryogenesis in Theobroma cacao using the homologous BABYBOOM transcription factor. BMC Plant Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17220] [ The following blocks are input data for analysis step 15674 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15674; DIMENSIONS NTAX=16; TAXLABELS Arabidopsis_thaliana_AIL5 Arabidopsis_thaliana_ANT Arabidopsis_thaliana_BBM Arabidopsis_thaliana_PLT2 Brassica_napus_BBM1 Brassica_napus_BBM2 Glycine_max_AIL5 Glycine_max_BBM1 Glycine_max_PLT2 Medicago_truncatula_BBM_Putative Oryza_sativa_BBM1_Putative Theobroma_cacao_AIL5_Putative Theobroma_cacao_BBM Theobroma_cacao_PLT2_Putative Vitis_vinifera_BBM_Like Zea_mays_BBM1_Putative ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M30343] TITLE 'AP2-like ethylene-responsive transcription factor AIL5'; LINK TAXA = TaxaForAnalysisStep15674; DIMENSIONS NCHAR=938; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_AIL5 MKNNNNKSSSSSSYDSSLSPSSSSSSHQNWLSFSLSNNNNNFNSSSNPN-----LTSSTSDHHHPHPSHLSLFQAFST--------SPVERQDGSPGVSP-----------------------------------------------------------------------SDATAVLSVYPG----GPKLENFLGGGASTT------------------TTR----------------PMQQVQSLGG------------------------VVFSSDLQPPL---------HPPSAAEIYDSE---------------------------LKSIAASFLGN-------------------YSGGHSSEVSSVHKQQPNPLAVSEA-----------------SPT-PKKNVESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFP------ISNYESELEEMKHMTRQEFVASLRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDISRYDVKSI-ASCNLPVG-GLMPKPSPATAAADK---TVDLSPSDSP----SLTTPSLTFN----------VATPVNDHGGTFYHTGIPIKPDP-------------------ADHYWSN-----------------IFGFQANPKAEMRPLANFGSDLHNPSP------------GYAIMPVMQEGENNFGG---------------------SFVGSDGY-------------------------------NNHSAA-----------------------SNPVSAIPLSSTT-----TMSNGNEGYGGNINWI---NNNISSSYQTAKSNLSVLHT--PVFGLE--- Arabidopsis_thaliana_ANT ------------MKSFCDNDDNNHSNTTNLLGFSLSSNMMKMGGRGGREAIYSSSTSSAATSSSSVPPQLVVGDNTSNFGVCY----GSNPNGGIYSHMSVMPLRSDGSLCLMEALNR-----------------------------------------------------SSHSNHHQDS------SPKVEDFFGTHHNNT------------------SHKEAM-------------DLSLDSLFYNTTHEPNTT----------------TNFQEFFSFPQTRN------HEEETRNYGNDPSLTHGGSF-----------NVGVYGEFQQSLSLSMSPGSQSSCITGSHHHQQNQNQNHQSQNHQQISEALVETSVGFETTTMAAAKKKRGQEDVVVVGQKQIVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSFKKEGHSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFS------AENYQKEIEDMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDVAAIKFRGTNAVTNFDITRYDVDRIMSSNTLLSG-ELARRNNN------------------------SIVVRNTEDQ------------------------TALNAVVEG----------------------------------------------------------------------------------GSNKEVSTPERLLSF--------------------------------------------------------------------------------------------PAIFALPQVNQK-------MFGSNMGGNMSPWTSNPNAELKTVALTLPQM--------PVFAAWADS Arabidopsis_thaliana_BBM -----------------------MNSMNNWLGFSLSPHDQNHH---RTD-----VDSST----------TRTAVDVAG-GYCFDLAAPSDESSAVQTSFL------SPFGVTLEAFTRDNN-------------------SHSRDWDING---------------------GACNNINNNEQN----GPKLENFLGRTTTIY------------------NTNETV-------------VDGNGDCGGGDGGGG-------------------GSLGLSMIKTWLSN------HSVANANHQDNGNG-------------------------ARGLSLSMNSS-------------------TSDSNNYNNNDDVVQEKTIVDV-----V--------------ETT-PKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFP------LSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLSAVTNFDMNRYNVKAILESPSLPIG-SSAKRLKDVNNPVPA------------------MMISNNVSE----------SANNVSGWQ-N---TAFQ-HHQG-------MDLSLLQQQQERYVGYYN-------GGNLSTESTRVCFKQEE-----------EQQHFLRNSP-----SH--MT-NVDHHSSTSDDSVTVCGNVV------------------SYGGYQGF-AIPVGTS---------------------VNYDPFTAAEIAYN-----------------ARNHYYYAQHQQQ--QQIQQSPGGDFPVAISNNH---SSNMYFHGEGGGEGA-------PTFSVWNDT Arabidopsis_thaliana_PLT2 ------------------------MNSNNWLAFPLSPTHSSLP----PH-----IHSSQNSHFNL----GLVNDNIDN---------PFQNQG----------------------------------------------------WNMIN---------------------PHGGGGEGGE------VPKVADFLGVSKSGD------------------HHTDHNLV-----------PYNDIHQTNASD----------------------YYFQTNSLLPTVVT---CASNAPNNYELQESAHN-------------------------LQSLTLSMGSTGAAAAEVATVKA-------SPAETSADNSSSTTNTSGGAIV--------------------EAT-PRRTLETFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARAYDLAALKYWGPSTTTNFP------ITNYEKEVEEMKNMTRQEFVASIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFEINRYDVKAILESNTLPIGGGAAKRLKE-AQALES-------SRKREE----MIALGSNFHQ-----------YGAASGSSSVASSSRLQLQPYP---------LSIQQPFEHLHHHQPLL------TLQNNNDISQYHDSFSYI-QTQLHLHQQQTNNYLQSSSHTSQLYNAYLQSNPGLLHGFVSDNNNTS----------------------GFLGNNGI------------------------------GIGSSSTVGSSAEEEFPA------------VKVDYDMPPSGGA--------------TGYGGWN--SGESAQGSNPG------------GVFTMWNE- Brassica_napus_BBM1 -------------------------MNNNWLGFSLSPYEQNHH---RKD-----VYSST----------TTTVVDVAG-EYCYDPTAASDESSAIQTSFP------SPFGVVVDAFTRDNN-------------------SHSRDWDING---------------------CACNNIHNDEQD----GPKLENFLGRTTTIY------------------NTNENVG------------DGSGSGCYGGGDGGG-------------------GSLGLSMIKTWLRN------QPVDNVDNQENGNA-------------------------AKGLSLSMNSS-------------------TSCDNNNDSNNNVVAQGKTIDDSV------------------EAT-PKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFP------MSEYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYNVKAILESPSLPIG-SAAKRLKEANRPVPS-----------------MMMISNNVSE----------SENSASGWQ-N---AAVQ-HHQG-------VDLSLLHQHQERYNGYYYN------GGNLSSESARACFKQED-----------DQHHFLSNTQSL-------MT-NIDHQSSVSDDSVTVCGNVV------------------GYGGYQGF-AAPVN-------------------------CDAYAASEFDYN-----------------ARNHYYFAQQQQT-----QQSPGGDFPAAMTNNV---GSNMYYHGEGGGEVA-------PTFTVWNDN Brassica_napus_BBM2 -------------------------MNNNWLGFSLSPYEQNHH---RKD-----VCSST----------TTTAVDVAG-EYCYDPTAASDESSAIQTSFP------SPFGVVLDAFTRDNN-------------------SHSRDWDING---------------------SACNNIHNDEQD----GPKLENFLGRTTTIY------------------NTNENVG------------DIDGSGCYGGGDGGG-------------------GSLGLSMIKTWLRN------QPVDNVDNQENGNG-------------------------AKGLSLSMNSS-------------------TSCDNNNYSSNNLVAQGKTIDDSV------------------EAT-PKKTIESFGQRTSIYRGVTRHRWTGRYEAHLWDNSCKREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFP------MSEYEKEIEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLTAVTNFDMNRYNVKAILESPSLPIG-SAAKRLKEANRPVPS-----------------MMMISNNVSE----------SENNASGWQ-N---AAVQ-HHQG-------VDLSLLQQHQERYNGYYYN------GGNLSSESARACFKQED-----------DQHHFLSNTQSL-------MT-NIDHQSSVSDDSVTVCGNVV------------------GYGGYQGF-AAPVN-------------------------CDAYAASEFDYN-----------------ARNHYYFAQQQQT-----QHSPGGDFPAAMTNNV---GSNMYYHGEGGGEVA-------PTFTVWNDN Glycine_max_AIL5 -------------MDSSSS-SPPNSTNNNSLAFSLSNHFPNPS-----------SSPLSLFHSFTYPSLSLTGSNTVD--------APPEPT-------------------------------------------------------------------------------AGAGPTNLSIFT-G--GPKFEDFLGGSAATA------------------TTVACAPP-----------QLPQF-------------------------------------------------STDNNNHLYDSEL--------------------------KSTIAACFPRA-------------------LAAEQSTEPQ--------------------------------KPS-PKKTVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGPTTTTNFP------ISNYEKELEEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSI-ANSTLPIG-GLSGKNKNSTDSASE----------------------SKSHE-----------PSQSDGDPSSASSVTFASQQQP-----SSSNLSFAIPIKQDPSDYWSILG----YHNTPLDNSGIRNTTSTVTTTTFPSSNNGTASSLTP-------FN--MEFSSAPSSTGSDNNAAF------------------------FSGGGIF-----------VQQQTSHG----------HGNASSGSSSSSLSCSIPF------------ATPIFSLNSNTS-----------YESSAGYGNWI---GPTLHTFQSHAKPSLFQT----PIFGME--- Glycine_max_BBM1 -----------------------MGSMN-LLGFSLSPHEEHPS---SQD-----HSQTTPSRFSFNPDGSISSTDVAG-G-CFDL--TSDSTPHL-LNLP-------SYGI-YEAFHRNNS------------------INTTQDWKENY-------------NSQNLLLGTSCNKQNMNQNQ-QQ-QPKLENFLGGHSFGEHEQTYGGNS---------ASTDYMFP-----------AQPVSAGGGGSGGGSNNNNNS-------------NSIGLSMIKTWLRN------QPPNSENINNNNESGGNIRSSV-----------------QQTLSLSMSTGSQSSTSLPLLTA-------SVDNGESPSDNKQPNTSAALDSTQTGAI--------------ETA-PRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFP------ISHYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKSILESTTLPIG-GAAKRLKD-MEQVEL---SVDNGHRADQVDHSII-MSSHLTQ-GINNNYAGGGTATHHNWHNA---HAFH-QPQP--------CTTMHYPYGQRIN--WCK------QEQQDNSDAPHSLSYSDIHQLQLG--NNGTHNFFHTNSGLHPMLS--MD-SASIDNSSSSNSVVY-----D-----------------GYGGGGGYNVMPMGTTTAVVASDGDQNPRSNHG----FGDN--EIKALGYESVYGSAT---DSYHAH-ARNLYYLTQQLSV-----------DQGS---NWV---PTAIPTLAPR-TTNVSLC----PPFTLLHE- Glycine_max_PLT2 -------------------------MNNNWLSFPLSPTHSSLP---AHD-----LQATQYHQFSL----GLVNENMEN---------PFQNH----------------------------------------------------DW-------------------------SLINTHSSSE------VPKVADFLGVSKSEN------------------ESDLAA-------------SLNEIQSNDSD-----------------------YLFTNNSLVPMQNP---A--VDTPSNEYQENANSS------------------------LQSLTLSMGSGKD-----------------STCETSGDNSTNTTTTTTV-----------------------EAA-PRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEEKAARSYDLAALKYWGTSTTTNFP------ISNYEKELDEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKE-AQALES-------SRKREE----MIALGSSTFQ-----YGTTSSNSRLHAYPLMQHHHQFE-QPQP-LLTLQNHDISSHFSHQQDPLHQGYIQTQLQLHQQQSGGSSSYSFQNNNINNAQFY----NGYNLQNHPALLQGMIN--MG-SSSSSSVLENNNSNNNNVG-------------------GFVGSGFG-----------------------------MASNATSGNTVGTAEELGL------------VKVDYDMPT------------------GGYGGWSAAAAESMQTSNS-------------GVFTMWND- Medicago_truncatula_BBM_Putative ---------------------------MNLLGFSLSPQEQHPS---TQD-------QTVASRFGFNPN-EISGSDVQG-DHCYDL--SSHTTPHHSLNLS------HPFSI-YEAFHTNNN------------------IHTTQDWKENY-------------NNQNLLLGTSCMNQNVNNNN-QQAQPKLENFLGGHSFTDHQEYGGSNS---------YSSLHLPP-----------HQPEASCGGGDGSTSNN-----------------NSIGLSMIKTWLRN------QPPPPENNNNNNNESGAR---------------------VQTLSLSMSTGSQSSSSVPLLNANV-----MSGEISSSENKQPPTTAVVLDSNQTSVV--------------ESAVPRKSVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQVYLGGYDKEEKAARAYDLAALKYWGTTTTTNFP------ISHYEKEVEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDVAAIKFRGLSAVTNFDMSRYDVKTILESSTLPIG-GAAKRLKD-MEQVELNHVNVDISHRTEQ-DHSIINNTSHLTE---QAIYAATNAS---NWH-A---LSFQ-HQQPHHHYNANNMQLQNYPYGTQTQKLWCK------QEQDSDDHSTYTTA-TDIHQLQLGNNNNNTHNFF----GLQNIMS--MD-SASMDNSSGSNSVVYGGGDHG-----------------GYGGNGGY-MIPMA-----IANDGNQNPRSNNN----FGES--EIKGFGYENVFGTTT---DPYHAQAARNLYYQPQQSSA--GMVKGSSAYDQGSGCNNWV---PTAVPTLAPR-TNSLAVCHGT-PTFTVWNDT Oryza_sativa_BBM1_Putative -----------------------MASITNWLGFSSSSF-------------------------------SGAGAD------------PVLPHPPLQGKTS----------------------------------------HLMHQWGSAY-------------EG------GGTVAAAGGEET-A--APKLEDFLGMQVQQE------------------TA-----------------AAAAGHGRGGSS----------------------SVVGLSMIKNWLRS------QPPPAVVGGEDA---------------------------MMALAVSTSASPPVDATV------------PACISPDGMGSKAADGGGAAEAAAAAAA--------------QRM--KAAMDTFGQRTSIYRGVTKHRWTGRYEAHLWDNSCRREGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGTTTTTNFP------VSNYEKELDEMKHMNRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFGTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSIIESSNLPIGTGTTRRLKDSSDHTDN---VMDINVNTEP----NNVVSSHFTN-GVGNY--GSQHYGYNGWS-P---ISMQ-PIPS------------QYANGQPRA--WLK------QEQDSSVVTAA----QNLHNLHHFSSLGYTHNFFQQSDVPDVTGF--VD-APS--RSSDSYSFRYNGTNGFH----------------GLPGGISY-AMPVA-----TAVDQGQGIHG-------YGED--GVAGIDTTH---------DLYG---SRNVYYLSEGSLL--ADVEKEGDYGQSVGGNSWV------LPT----------------P-------- Theobroma_cacao_AIL5_Putative -------------MDMSMG-NMDSSSTQNWLAFSLSNQQQQH------------LNLPTSSSSSHHSSHLCLFEAFTT---------PNPTAPTSTINSSAREEDAAASGT------------------------------------------------------------TTAGATDLSMFR-G--GPKLEDFLGGSSTTT------------------GAG----------------DAPHPHFSAETP------------------------------------------VTVSDTEIYDSE---------------------------LKTIAASFLRG-------------------FSSERTDTHKQQQQQQQQLVPTA-------------------EPA-PRRAVDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ---GGYDKEEKAARAYDLAALKYWGPTTTTNFP------ISNYEKELGEMKNMTRQEFVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSI-ANSNLPIG-GLSNKSKNCSDSASD---------------------GKSTDD-----------DRDHSSASSA---VTFASQPAP------SSALSFAVPIKQDPSDYWSNI-----FGYNNTAASLSSAKNPSVAPTLFHQSSNNGSAFQDPSA---------FSMAFGVNSLVNESSN-------------------------GLFNGGGY---------------------------------VQQQSGVSTST----------------SSLPLATPTALNN-----SGNNNYESSSGYGSWI---AQSLHSYQTA-KPSLSVFQT--PIFGME--- Theobroma_cacao_BBM -----------------------MASMNNWLAFSLSPQELPSQTVDQDH-----HSQTAVSRLGFNSD-DISGADVSG--ECFDL--TSDSSAPS-LNLP------PPFGI-LEAFNRNNQSQGSVCFAPSKHTRTFSSFSHVKDWNMKGLGMNSDGNYK-TSSELSMLMGSSCNGQSLDQSN-Q--EPKLENFLGNHSFSNHQQNKLHGCNTMYNT---TTGEYMFPNCSLQLPSE--DTTNARTSNGGDDNDNNNNKNNNNNTNINTGNGSSSIGLSMIKTWLRN------QPAPPQPEAKNN------GG-----------A-------SQSLSLSMSTGSQTGSPLPLLTSST--GGGSGGESSSSDNNKQQKTPTGMDS-ESGAI--------------EAM-PRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQTRKGRQ---GGYDKEEKAARAYDLAALKYWGTTTTTNFP------ISNYEKELEEMKHMTRQEYVASLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPIG-GAAKRLKD-VEQAEM---ALDVQRVDDD------NMSSQLTD-GINNY-----GAAHHGWP-T---IAFQ-QAQP---------FSMHYPYGQR---VWCK------QEQDSDANHTF----QDLHQLQLG----STHNFFQPS-VLHNLMA--MD-SSSMEHSSGSNSVIYCNGGGGDAAGSNG--ASGSYQAVGYGGNGGY-VIPMG---TVVASDSNQN-QGN-G----FGDN--EVKTLGYETMYGS-A---DPYH---PRNLYYLSQQSST--GGVKASS-YDQASACNNWV---PTAVPTIAQR-SSNMAVCHGA-PTFTVWNDT Theobroma_cacao_PLT2_Putative ---------------------MGSMNSNNWLSFPLSPTNSSLP----TH-----LHPSQSHQFNL----GLVNDNMEN---------PFQAQGTDHILSIFSLSIFVSLICLVCKFT---------------------------EW-------------------------NLINTHDTSE------VPKVADFLGVSKSES------------------PSLDLV-------------AFNEIHQANDSD----------------------YSFQSNSIVPVQNA--VV--AANNNYEYQENANN-------------------------LQSLTLSMGSGKG-----------------STCETSGENSTKTV----------------------------EAP-PRRTLDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQ---GGYDKEEKAARAYDLAALKYWGTSTTTNFPVYKFSTISNYEKELEEMKHMTRQEFVAAIRRKSSGFSRGASMYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKAILESNTLPIGGGAAKRLKE-AQALES-------SRKREE----MIALGSSFQY-------GSSTSSRLQAYPLMQ--TPFE-QPQP-LLTLQNQDMSQYAQDTSSFHQNYIQT-----QLQLHQQSGSYLHQPSQNSQF-------YNSHIQNNPALLHGLMS--MGCSSTVVDNNGSSSGSYSG---------------------GYLGNGIG-----------------------------MASNSTAGNAVGSTEELAL------------VKVDYDMPS------------------GGYGGWS---GDSVQGTNA-------------GVFSMWND- Vitis_vinifera_BBM_Like -LIKE-----------------------MASMNSWSSNMMKPRELPPQ---PEN-----HSQNSVSRLGFNSD-EISNTDV-G---LIKEENFDL--TMDSTAPS-LNLP------PPFGI-L--F--NNQ---------------------PQDWNMKGLGMNSDTNYK-LIKETTTSELSMLMG-SCKSEDNLENQ----E--L-N-L-CRSFADHEQ-KLQGCNSIAAAAYD-SADY-FPNCSLQLPSEPV--LIKETPTPRGGGGGSTTVNN-----------------SSIGLSMIKTWLSL------QPAP-HQDN-KSTD-GPVGG--------LIKE----AAAGNLPNAQTQNHQSQTHQQISSPLPLLTASAGGGGGSGGESSSSDNKK----ATPLDS-QTG-I-----------LIKE----ETV-PWDNSFKKEGHSRIGRQVYLGGYDMEEKAARAYDLCRRKYQT------------K------------------LIKETTRTKSSP------ISRGETRHHEHGHWQARIGRVSGNKDLYLGT------------------------------------LIKENSLLSG-ELARRINN-----L-------MS----NS-LESS--PI--GA-K-LKD-AEQAEM---TIDGQRTDDE------LIKE--MSSQLTD-GINNY-----GAHHHGWP-T---V-FQ-QAQP---------FSMHYPYGHQQRAVWCK------QEQDPD-LIKEGTHNF----QDLHQLQLG----NTHNFFQPN-VLHNLMS--MD-S-SMDH-SGSNSVIYSGGGAADGSAATGGSGSGSFQ-LIKEGVGYGNNIGF-VMPIS---TVIAHEGGHG-QGNGG----FGDS--EVKAIGYDNMFGS-T---DPYH---ARSLYY-S-Q-LI Zea_mays_BBM1_Putative -----------------------MASANNWLGFSLSGQDNPQP-----------NQDSS----------PAAGIDISGASDFYGL--PTQQGSDGHLGVPGLRDDHASYGI-MEAYNRVPQ--------------------ETQDWNMRGLDYNGGG------SELSMLVGSSGGGGGNGKRAVEDSEPKLEDFLGGNSFVSDQD---------------QSGGYLFS-----------GVPIASSANSNSGS--------------------NTMELSMIKTWLRNNQVAQPQPPAPHQPQPEEMSTDASGSSFGCSDSMGRNSMVAAGGSSQSLALSMSTGSHLPMVVPSGAASG-----AASESTSSENKR---ASGAMDS-PGSAV--------------EAV-PRKSIDTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQSRKGRQVYLGGYDKEDKAARAYDLAALKYWGTTTTTNFP------ISNYEKELEEMKHMTRQEYIAYLRRNSSGFSRGASKYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTEEEAAEAYDIAAIKFRGLNAVTNFDMSRYDVKSILESSTLPVG-GAARRLKDAVDHVEA---GATIWRADMD-----GAVISQLAEAGMGGY----ASYGHHGWP-T---IAFQ-QPSP---------LSVHYPYGQPSRG-WCK------PEQDAAAAAAHSL--QDLQQLHLG---SAAHNFFQAS----------------------SSSTVYNGGAGA----------SGGYQ--GLGGGSSF-LMPSS--TVVAAADQGHSSTANQGSTCSYGDDHQEGKLIGYDAAMVATAAGGDPYAA--ARNGYQFSQGSGSTVSIARANG------YANNWS-------------------------SPFNNGMG- ; END; [ The following blocks are output data for analysis step 15674 ] BEGIN TREES; TITLE 'TcBBM-AP2'; LINK TAXA = TaxaForAnalysisStep15674; TREE Imported_tree_1 = [&R] ((((((Theobroma_cacao_BBM:0.10502274,Vitis_vinifera_BBM_Like:0.11208493)1.0000:0.07122961,(Medicago_truncatula_BBM_Putative:0.14303813,Glycine_max_BBM1:0.15485854)1.0000:0.06885147)1.0000:0.08255121,Zea_mays_BBM1_Putative:0.26477327)0.6760:0.03269806,Oryza_sativa_BBM1_Putative:0.32422432)0.5450:0.02460104,(Arabidopsis_thaliana_BBM:0.11059359,(Brassica_napus_BBM1:0.01343341,Brassica_napus_BBM2:0.01104334)1.0000:0.08534604)1.0000:0.27395058)0.9240:0.03154872,(Arabidopsis_thaliana_ANT:0.39948031,(((Theobroma_cacao_AIL5_Putative:0.26449663,Glycine_max_AIL5:0.23556897)0.8440:0.03459397,Arabidopsis_thaliana_AIL5:0.31865079)1.0000:0.07891397,(Arabidopsis_thaliana_PLT2:0.23677592,(Glycine_max_PLT2:0.14291277,Theobroma_cacao_PLT2_Putative:0.1585973)0.9860:0.05338538)1.0000:0.14862029)0.4360:0.01179143)0.9240:0.00673672); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr85968] END;