#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 21, 2026; 10:40 GMT TreeBASE (cc) 1994-2008 Study reference: Gao L., Zhang M., Hao L., Chen H., Zhang R., Sun G., Batzer M., & Gleason M. 2014. Molecular and morphological analysis reveals five new species of Zygophiala associated with flyspeck from China. PLOS ONE, 9(10): 1-12. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15750] [ The following blocks are input data for analysis step 15970 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15970; DIMENSIONS NTAX=30; TAXLABELS Mycosphaerella_thailandica_AY840477 Schizothyrium_pomi_CUA1a Schizothyrium_pomi_PEA1a Zygophiala_cryptogama_HL_MMQSG_1 Zygophiala_cylindrica_ZMH3 Zygophiala_cylindrica_ZMHS23 Zygophiala_cylindrica_ZMHS33 Zygophiala_cylindrica_ZMHS8 Zygophiala_emperorae_CC_WWZ_2 Zygophiala_emperorae_GL_QXLPPG_1 Zygophiala_emperorae_GL_QXLPPG_2 Zygophiala_emperorae_LYP_YX_12.1 Zygophiala_inaequalis_GL_MMXJ_52 Zygophiala_inaequalis_GL_MMXJ_56A Zygophiala_longspora_GL_GZXJ_39 Zygophiala_musae_CHC_HNBJ_2 Zygophiala_qianensis_HL_MMGL_2 Zygophiala_qianensis_LWH_LNLZ_14 Zygophiala_qianensis_MNYXY1.2 Zygophiala_qianensis_MYNYX4.8 Zygophiala_qianensis_MYQ_QXBS_06 Zygophiala_tardicresens_MWA1d_ Zygophiala_trispora_HL_HKBJ_23D Zygophiala_wisconsinensis_CC_SZSZ_20 Zygophiala_wisconsinensis_CC_ZJJ_69 Zygophiala_wisconsinensis_HL_CSPGL_53 Zygophiala_wisconsinensis_LHY_LB_12 Zygophiala_wisconsinensis_LHY_LB_14 Zygophiala_wisconsinensis_LHY_LB_15 Zygophiala_wisconsinensis_LHY_LB_6 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M31011] TITLE Zygophiala_TEF; LINK TAXA = TaxaForAnalysisStep15970; DIMENSIONS NCHAR=251; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . ] Mycosphaerella_thailandica_AY840477 CATCGAGAA-GTTCGAGAAGGTAAGCCATCGCCTGCAGTGCGCGTTC-ACGACTATCACCCAACTCGTCGCCGCTCATCACCTC----TGCCCACCTTGGCTTGGTGAGGGGCAAAATCATGGTGGGGTGCGAGAAATTTGCGCTTGGGCGTTTGCGGCTCCACC-CACATGACTTCATCCATCACCGCCATGCTTCTCAACCATCCTCACCCACGCGCGCCGGCACACCTCGCATCGACCCCGATCCCCG Schizothyrium_pomi_CUA1a CATCGAGAA-GTTCGAGAAGGTATGTTG-AAAATTT-CCGTTGAGCCAGTCTCATGCGCACCATGAGTAGA-TTCC-GCCCCGCAACGCGCGCCTCTTGTTCCTCA--GTC-GGGGATGAA-GAGGGGTACGTGACGCGGGGTGCGAAAATTTTTGAACTT-ACCCCATCCGGCTTGACCTTTGTACACTG--TTTCTGACATTCGCTC-TACAGGAA-GCTGCCGAGCTCGGTAAGGGTTCC--TTCAAG Schizothyrium_pomi_PEA1a CATCGAGAA-GTTCGAGAAGGTATGTTG-AAAATTT-CCGTTGAGCCAGTCTCATGCGCACCATGAGTAGA-TTCT-GCCCCGCAACACGCGCCTCTTGTTCCTCA--GTC-GGGGATGAA-GAGGGGTACGTGACGCGGGGTGCGAAAATTTTTGAACTT-ACCCCATCCGGCTTGACCTTTGTACACTG--TTTCTGACATTCGCTC-TACAGGAA-GCTGCCGAGCTCGGTAAGGGTTCC--TTCAAG Zygophiala_cryptogama_HL_MMQSG_1 CATCGAGAA-GT-CGAGAAGGTATGCTG-AAAATTTT-CATCTGTAC-ACTGCAAGCGC--CATGCGCAAA-TTC--GCCTCGTAATGCGCGCCTCTTGTTCCCCTCAGTC-GGAGGGTAA-GAGGGGTATGTGACGCGGGGTGCGAA-TTTTCTGAACTTTACCTCATTTGGCCTGGCTTTCGCACAGT---CTTCTGATAATTAATC-TCCAGGAA-GCTGCCGAACTCGGTAAGGGTCCC--TTCAAG Zygophiala_cylindrica_ZMH3 CATTGAGAA-GTTCGAGAAGGTACGTTG-AAATCTCC--GTCCAAT--ATCTCACGCGCACCATGAGCAAAATTTCCGCCTCGTG--TCGCGCA-----CTCTTC---TTTGGGAGGGGGAAGAGGGGTACATGACGCGGGGTGCGAAAATTTCTGTACTTTACCATTTCTAGTTTGG--TCCGCACAGT---CTTCTGACATGCCCCATTACAGGAA-GCCGCCGAGCTCGGAAAGGGTTCA--TTCAAG Zygophiala_cylindrica_ZMHS23 CATTGAGAA-GTTCGAGAAGGTACGTTG-AAATCTCC--GTCCAAT--ATCTCACGCGCACCATGGGCAAAATTTCCGCCTCGTG--TCGCGCA-----CTCTTC---TTTGGGAGGGGGAAGAGGGGTACATGACGCGGGGTGCGAAAATTTCTGTACTTTACCATTTCTAGTTTGG--TCCGCACAGT---CTTCTGACATGCCCCATTACAGGAA-GCCGCCGAGCTCGGAAAGGGTTCA--TTCAAG Zygophiala_cylindrica_ZMHS33 CATTGAGAA-GTTCGAGAAGGTACGTTG-AAATCTCC--GTCCAAT--ATCTCACGCGCACCATGAGCAAAATTTCCGCCTCGTG--TCGCGCA-----CTCTTC---TTTGGGAGGGGGAAGAGGGGTACATGACGCGGGGTGCGAAAATTTCTGTACTTTACCATTTCTAGTTTGG--TCCGCACAGT---CTTCTGACATGCCCCATTACAGGAA-GCCGCCGAGCTCGGAAAGGGTTCA--TTCAAG Zygophiala_cylindrica_ZMHS8 CATTGAGAA-GTTGGAGAAGGTACGTTG-AAATCTCC--GTCCAAT--ATCTCACGCGCACCATGAGCAAAATTTCCGCCTCGTG--TCGCGCA-----CTCTTC---TTTGGGAGGGGGCAGAGGGGTACATGACGCGGGGTGCGAAAATTTCTGTACTTTACCATTTCTAGTTTGG--TCCGCACAGT---CTTCTGACATGCCCCATTACAGGAA-GCCGCCGAGCTCGGAAAGGGTTCA--TTCAAG Zygophiala_emperorae_CC_WWZ_2 CATCGAGAAAGTTCGAGAAGGTACGTTGCAAAATTTT-CATCTGAT--ACCTCACGCGCGCCGTGTGAAAA-TTCC-GCCTCG-----CAC--TTCCAGTCCCTCA--TTTTGGAGGGAAAGGAGGGGTACGCGACGCGGGGCGTGAAATTTTTTAGACTTAACCACATCCGGCTTGACCCTCACACAGT---CTTCTGACATCTTAT--TGCAGGAA-GCCGCCGAACTCGGAAAGGGTTCC--TTCAAG Zygophiala_emperorae_GL_QXLPPG_1 CATCGAGAA-GTTCGAGAAGGTACGTTGCAAAATTTT-CATCTGAT--ACCTCACGCGCGCCGTGTGAAAA-TTC--GCCTCG-----CGC--TTCCAGTCCCTCA--TTTTAGAGGGAAAGGAGGGGTACGCGACGCGGGGCGTGAAATTTTTTAGACTTAACCACATCCGGCTTGACCCTCACACAGT---CTTCTGACATCTTAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_emperorae_GL_QXLPPG_2 CATTGAGAA-GTTTGAGAAGGTACGTTGCAAAATTTT-CATCTGAT--ACCTCACGCGCGCCGTGTGAAAA-TTCC-GCCTCG-----CGC--TTCCAGTCCCTCA--TTTTGGAGGGAAAGGAGGGGTACGCGACGCGGGGCGTGAAATTTTTTAGACTTAACCACATCCGGCTTGACCCTCACACAGT---CTTCTGACATCTTAT--TGCAGGAA-GCCGCCGAACTCGGAAAGGGTTCC--TTCAAG Zygophiala_emperorae_LYP_YX_12.1 CATCGAGAA-GTTCGAGAAGGTACGTTGCAAAATTTT-CATCTGAT--ACCTCACGCGCGCCGTGTAAAAA-TTC--GCCTCG-----CGC--TTCCAGTCCCTCA--TTTTGGAGGGAAAGGAGGGGTACGCGACGCGGGGCGTGAAATTTTTTAGACTTAACCACATCCGGCTTGACCCTCACACAGT---CTTCTGACATCTTAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_inaequalis_GL_MMXJ_52 CATCGAGAA-GTTCGAGAAGGTAGGTTG-AAAATTTTCCGTCAAACAAGTATCATGCGCACCATGAGCA-A-TTTC-GCCCCGCAACGCGCGCCTCTCGTCTCTC----TC-AGAGAGGAA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTTGAACTTTACCCCATCCGGCTTGGCCTACGCACACT---CCTCTGACATTCGCTC-TACAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_inaequalis_GL_MMXJ_56A CATCGAGAA-GTTCGAGAAGGTAGGTTG-AAAATTTTCCGTCAAACAAGTTTCATGCGCACCATGAGCA-A-TTTC-GCCCCGCAACGCGCGCCTCTCGTCTCTC----TC-AGAGAGGAA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTTGAACTTTACCCCATCCGGCTTGGCCTACGCACACT---CCTCTGACATTCGCTC-TACAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_longspora_GL_GZXJ_39 CATCGAGAAAGGTCGAGAAGGTATGTTG-AAAATTTTTCATTTGAT--ACCGCGTGCGCATCACACGCTTA-TTTC-GTCCCAT----CGCGCTTCCAGTCTCTC----CTTGGAGGGGAA-GAGGGGTACGCGATGCGGGGTGCGAAATTTTTTGGTCTTTACCACATCTGGCTTGACGCTCGTACAGT---GTTCTGACATGTCCTT--GTAGGAA-GCCGCCGAACTCGGAAAGGGTTCT--TTCAAG Zygophiala_musae_CHC_HNBJ_2 CATCGAGAA-GT-CGAGAAGGTATGTTG-AAAATTTTTCTTCAGAT--ACCTCGTGCGCACCACATGCAAA-TTC--GCCTCGTT--GCGC--TTCCAGTCCCTC----TTTGGAGGGGAA-GAGGGGTACGCGATACGGGGTGTGAAATTTTTTGAACTTTACCACATCTGGCTTGAACCTTACACAGT---CTTCTGACATGTCAT--TGCAGGAA-GCTGCCGAACTCGGTAAGGGTCCC--TTCAAG Zygophiala_qianensis_HL_MMGL_2 CATCGAGAA-GT-CGAGAAGGTATGTTG-AAAATTTT-CATTCAGAC-GCCGTGAGCACACCACGCGCAAA-TTC--GCCC-GTTACGCGCGCCTCATGTCCTTCA--GTT-GGAGGGGCA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTCGAACTTTACCCTATCTGGCTTGGCTTTCGAACAGC---CTTCTGATATGCACTC-TACAGGAA-GCCGCCGAACTCGGTAAGGGTCCC--TTCAAG Zygophiala_qianensis_LWH_LNLZ_14 CATCGAGAA-GT-CGAGAAGGTATGTTG-AAAATTTT-CATTCAGAC-ACCGTGAGCACACCACGCGCAAA-TTC--GCCC-GTTACGCGCGCCTCATGTCCTTCA--GTT-GGAGGGGCA-GAGGGGTATGTGACGTGGGGTGCGAAATTTTTCGAACTTTACCCTATCTGGCTTGGCTTTCGAACAGC---CTTCTGATATGCACTC-TACAGGAA-GCCGCCGAACTCGGTAAGGGTCCC--TTCAAG Zygophiala_qianensis_MNYXY1.2 CATTGAGAA-GTTCGAGAAGGTATGTTG-AAAATTTT-CATTCAGAC-GCCGTGAGCACACCACGCGCAAA-TTCC-GCCC-GTTACGCGCGCCTCATGTCCTTCA--GTT-GGAGGGGCA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTCGAACTTTACCCTATCTGGCTTGGCTTTCGAACAGC---CTTCTGATATGCACTC-TACAGGAA-GCCGCCGAACTCGGAAAGGGTTCC--TTCAAG Zygophiala_qianensis_MYNYX4.8 CATCGAGAA-GTTCGAGAAGGTATGTTG-AAAATTTT-CATTCAGAC-GCCGTGAGCACACCACGCGCAAA-TTC--GCCC-GTTACGCGCGCCTCATGTCCTTCA--GTT-GGAGGGGCA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTCGAACTTTACCCTATCTGGCTTGGCTTTCGAACAGC---CTTCTGATATGCACTC-TACAGGAA-GCCGCCGAACTCGGTAAGG-TTCC--TTCAAG Zygophiala_qianensis_MYQ_QXBS_06 CATTGAGAA-GTTCGAGAAGGTATGTTG-AAAATTTT-CATTCAGAC-GCCGTGAGCACACCACGCGCAAA-TTCC-GCCC-GTTACGCGCGCCTCATGTCCTTCA--GTT-GGAGGGGCA-GAGGGGTACGTGACGCGGGGTGCGAAATTTTTCGAACTTTACCCTATCTGGCTTGGCTTTCGAACAGC---CTTCTGATATGCACTC-TACAGGAA-GCCGCCGAACTCGGAAAGGGTTCC--TTCAAG Zygophiala_tardicresens_MWA1d_ CATCGAGAA-GTTCGAGAAGGTATGTTGAAAAATTTTT-ATCTGAT--ACCTCGCGCGCACCACATGCAAA-CTCC-GCCTCGT--CGCGC--TTCTAGCCCCTC----CCTGGAGGGGA-GGAGGGGTACGCGATGCGGGGTGCGAAATTTTTTGGACTTTACCACATCCGGCTTGACCCTCTCACTACAGCCTTCTGATATGCCAT--TGCAGGAA-GCTGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_trispora_HL_HKBJ_23D CATCGAGAA-GTTCGAGAAGGTACGTTG-AAAATTTT-CATTTGAAC-ACCCCACGCGCATCAATCGCA-A-TTTC-GCCTTAT--CGCGCGCCCCCAGTCTCTCA--TCTTGGAGGGGAA-GAGGGGTACGCGATGCGGGGAGCGAAATTTTTTGGACTTTACCACATTCGGATTGC---------------CTTCTGACACCTCA-----CAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_wisconsinensis_CC_SZSZ_20 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CATCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_wisconsinensis_CC_ZJJ_69 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCCC-TTCAAG Zygophiala_wisconsinensis_HL_CSPGL_53 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAA--TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCCC-TTCAAG Zygophiala_wisconsinensis_LHY_LB_12 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_wisconsinensis_LHY_LB_14 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCCC-TTCAAG Zygophiala_wisconsinensis_LHY_LB_15 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCC--TTCAAG Zygophiala_wisconsinensis_LHY_LB_6 CATCGAGAA-GTTCGAGAAGGTTCGTTCCAGAATTTT-CATCTGAT--ACCTTAAGCGCACCGTGTGAAAA-TTC--GCCTCGT----CGCGATTCCAGTCCCTCA--TCATGGAGGGGAAGGAGGGGTACGCGACGCGGGGTGCGAAAATTTTTGGACTTTACTACATCCAGCTTGACCCTCACACAGT---CTTCTGACATTTCAT--TGCAGGAA-GCCGCCGAACTCGGTAAGGGTTCCC-TTCAAG ; END; [ The following blocks are output data for analysis step 15970 ] BEGIN TREES; TITLE Zygophiala_TEF_Maj_Rule_Con; LINK TAXA = TaxaForAnalysisStep15970; TREE Consensus_tree_of_52_trees = [&R] (Mycosphaerella_thailandica_AY840477:59.5,((Zygophiala_qianensis_LWH_LNLZ_14:2.0,(Zygophiala_qianensis_HL_MMGL_2:0.0,(Zygophiala_qianensis_MYNYX4.8:0.0,(Zygophiala_qianensis_MYQ_QXBS_06:0.0,Zygophiala_qianensis_MNYXY1.2:0.0):1.0):1.0):1.0):14.0,(Zygophiala_cryptogama_HL_MMQSG_1:23.0,((((Zygophiala_inaequalis_GL_MMXJ_56A:13.0,Zygophiala_inaequalis_GL_MMXJ_52:13.0):7.0,(Schizothyrium_pomi_PEA1a:2.0,Schizothyrium_pomi_CUA1a:0.0):28.0):6.0,(Zygophiala_cylindrica_ZMH3:0.0,Zygophiala_cylindrica_ZMHS33:0.0,Zygophiala_cylindrica_ZMHS8:2.0,Zygophiala_cylindrica_ZMHS23:1.0):40.0):5.5,((Zygophiala_musae_CHC_HNBJ_2:10.5,Zygophiala_tardicresens_MWA1d_:10.0,(Zygophiala_longspora_GL_GZXJ_39:13.0,Zygophiala_trispora_HL_HKBJ_23D:14.0):11.0):3.5,((Zygophiala_emperorae_LYP_YX_12.1:1.0,Zygophiala_emperorae_GL_QXLPPG_1:1.0,(Zygophiala_emperorae_CC_WWZ_2:1.0,Zygophiala_emperorae_GL_QXLPPG_2:2.0):0.5):7.5,(Zygophiala_wisconsinensis_HL_CSPGL_53:0.0,Zygophiala_wisconsinensis_LHY_LB_6:0.0,Zygophiala_wisconsinensis_CC_ZJJ_69:0.0,Zygophiala_wisconsinensis_LHY_LB_14:0.0,Zygophiala_wisconsinensis_LHY_LB_15:0.0,Zygophiala_wisconsinensis_LHY_LB_12:0.0,Zygophiala_wisconsinensis_CC_SZSZ_20:1.0):5.25):3.5):30.5):5.0):5.0):59.5):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87120] END;