#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on April 22, 2026; 20:01 GMT TreeBASE (cc) 1994-2008 Study reference: Gao L., Zhang M., Hao L., Chen H., Zhang R., Sun G., Batzer M., & Gleason M. 2014. Molecular and morphological analysis reveals five new species of Zygophiala associated with flyspeck from China. PLOS ONE, 9(10): 1-12. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S15750] [ The following blocks are input data for analysis step 15971 ] BEGIN TAXA; TITLE TaxaForAnalysisStep15971; DIMENSIONS NTAX=31; TAXLABELS Acremonium_sp._407_JN836733 Schizothyrium_pomi_CUA1a_S.pomi Schizothyrium_pomi_PEA1a Zygophiala_cylindrica_ZMHS23 Zygophiala_cylindrica_ZMHS33 Zygophiala_cylindrica_ZMHS53 Zygophiala_cylindrica_ZMHS8 Zygophiala_emperorae_CC_WWZ_2 Zygophiala_emperorae_GL_QXLPPG_1 Zygophiala_emperorae_GL_QXLPPG_2 Zygophiala_emperorae_LYP_YX_12.1 Zygophiala_inaequalis_GL_MMXJ_52 Zygophiala_inaequalis_GL_MMXJ_56A Zygophiala_longspora_GL_GZXJ_39 Zygophiala_musae_CHC_HNBJ_2 Zygophiala_qianensis_HL_MMGL_2 Zygophiala_qianensis_HL_MMQSG_1 Zygophiala_qianensis_LWH_LNLZ_14 Zygophiala_qianensis_MYNYX4.8 Zygophiala_qianensis_MYQ_QXBS_06 Zygophiala_tardicresens_MWA1d Zygophiala_trispora_HL_HKBJ_23D Zygophiala_wisconsinensis_CC_CSFHGRLZ Zygophiala_wisconsinensis_CC_CSXPGL Zygophiala_wisconsinensis_CC_XT_NL5 Zygophiala_wisconsinensis_CC_ZJJ_13 Zygophiala_wisconsinensis_CC_ZJJ_14 Zygophiala_wisconsinensis_CC_ZJJ_61A Zygophiala_wisconsinensis_CC_ZJJ_69 Zygophiala_wisconsinensis_HL_CSPGL_53 Zygophiala_wisconsinensis_LHY_LB_14 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M31013] TITLE Zygophiala_ACT; LINK TAXA = TaxaForAnalysisStep15971; DIMENSIONS NCHAR=279; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Acremonium_sp._407_JN836733 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCTCCCCGAGCTGTTTTCCGTAAGTTAACCCCACTTTCGCTTCTCAAGCTCCTAATCGACCACACCTGGCGATATGGGCTTTGGGGACTTGGAAGGAAACGACACAAAGCTAACGCGATGCGCCAGCTTCCATTGTCGGTCGTCCCCGTCACCATGGGTAAGTTCGCGCGCAAATGACACCTGTCAGCCCCCTCGACGAGCGGCACGGGCTCTGACCATTCAATAGTATCATGATTGGTATGGGACAGA Schizothyrium_pomi_CUA1a_S.pomi TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTAAGT------CAATATTGTTCTCCGAAATCAA-A---------------------------TA----TTGCGAGAT---CGCCTGATTCTGACGC--TGCCATAGCCTCCATTGTCGGACGGCCCCGTCACCATGGGTATGTCAC--CCCACGCGCCACTAGT--GCGCCGACAGCT-TTAACGATGCCTAACCTCGTCGCACAGAATCATGATCGGCATGGGCCAGA Schizothyrium_pomi_PEA1a TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTGAGT------CAATATTGTTCTCCGAAATCAA-A---------------------------TA----TTGCGAGAT---CGCCTGATTCTGACGC--TGCCATAGCCTCCATTGTCGGACGGCCCCGTCACCATGGGTATGTCAC--CCCACGCGCAACTAGT--GCGCCGACAGCT-TTAACGATGCCTAACCTCGTCGCACAGAATCATGATCGGCATGGGCCAGA Zygophiala_cylindrica_ZMHS23 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTAAGT------CACTGCTGTTCCCGGATGCTCTGC---------------------------GA---TCT-CCCAATTGCAGCCTGTTTCTAACGC--TGCCCTAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACATTCTACACACCAAATGT--GCGCCGACGGCC-CTGACCATGCCTAACCTTATCGCGCAGAATCATGATCGGTATGGGCCAGA Zygophiala_cylindrica_ZMHS33 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTAAGT------CACTGCTGTTCCCGGATGCTCTGC---------------------------GA---TCT-CCCAATTGCAGCCTGTTTCTAACGC--TGCCCTAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACATTCTACACACCAAATGT--GCGCCGACGGCC-CTGACCATGCCTAACCTTATCGCGCAGAATCATGATCGGTATGGGCCAGA Zygophiala_cylindrica_ZMHS53 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTAAGT------CACTGCTGTTCCCGGATGCTCTGC---------------------------GA---TCT-CCCAATTGCAGCCTGTTTCTAACGC--TGCCCTAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACATTCTACACACCAAATGT--GCGCCGACGGCC-CTGACCATGCCTAACCTTATCGCGCAGAATCATGATCGGTATGGGCCAGA Zygophiala_cylindrica_ZMHS8 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTCTTCCGTAAGT------CACTGCTGTTCCCGGATGCTCTGC---------------------------GA---TCT-CCCAATTGCAGCCTGTTTCTAACGC--TGCCCTAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACATTCTACACACCAAATGT--GCGCCGACGGCC-CTGACCATGCCTAACCTTATCGCGCAGAATCATGATCGGTATGGGCCAGA Zygophiala_emperorae_CC_WWZ_2 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCCCCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAACGC--TGCTATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGCATTATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_emperorae_GL_QXLPPG_1 TGTGCAAGGGCCGGTTTCGCCGGTGACGACGCCCCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAACGC--TGCTATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGCATTATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_emperorae_GL_QXLPPG_2 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCCCCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAACGC--TGCTATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGCATTATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_emperorae_LYP_YX_12.1 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCCCCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCCAGTTGCGGCCTGCCTCTAACGC--TGCTATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGCATTATCTGT--GCGCCCACGCCT-CTCATAATACCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_inaequalis_GL_MMXJ_52 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGCGCTGTCTTCCGTAAGT------CAACATAGTCCCCCGAAATCAA-A---------------------------GA----CTGCTAGAT---TTGACGATTCTGACGC--CGCCATAGCCTCCATTGTCGGACGGCCCCGTCACCATGGGTATGTCACGCCCCACGCGCCACTCGT--GCGCCGACAGCT-TTGACGATGCCTAACCTCGTCGCACAGAATCATGATTGGCATGGGCCAGA Zygophiala_inaequalis_GL_MMXJ_56A TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGCGCTGTCTTCCGTAAGT------CAACATAGTCCCCCGAAATCAA-A---------------------------GA----CTGCTAGAT---TTGACGATTCTGACGC--CGCCATAGCCTCCATTGTCGGACGGCCCCGTCACCATGGGTATGTCACGCCCCACGCGCCACTCGT--GCGCCGACAGCT-TTGACGATGCCTAACCTCGTCGCACAGAATCATGATTGGCATGGGCCAGA Zygophiala_longspora_GL_GZXJ_39 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCGGTTTTCCGTAAGT------CATTGCCACTCCTGAAGATCTCCA---------------------------AAACCTCT-TCGAGTTGCGACCTGTCTCTAACGC--TGCCATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAGCCACGCATCATCTGT--GCGCCCCCGCCT-CTCATAATGCCTAACCTCGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_musae_CHC_HNBJ_2 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTGTTCCGTAAGT------CATTGCCCCTCGTGAAGACCTCCA---------------------------GAACACCT-TCAAGTTGCGGCCTGTCTCTAACGC--CCCCATAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGCATCATGTGT--GCGCCCACGCCT-CTCGTAATGCCTAACGTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_qianensis_HL_MMGL_2 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTTTTCCGTA-GT------CATTGAAATCCTC-GAGATCAA-T---------------------------TTTCTCTTTTCAAACAGCCGCATGAATCTAACGC--CATTGCAGCCTCCATTGTTGGACGGCCCCGTCACCATGGGTATGTCACATCCCGCACGCCACCCGT--GCGCCCACAGCT-GTAACGATGCCTAACCCCGCCGCATAGAATCATGATCGGTATGGGCCAGA Zygophiala_qianensis_HL_MMQSG_1 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTTTTCCGTAAGT------CATTGAAGTCCCC-CAGATCAG-A---------------------------CT----TTGTCAAATGGCCGCCTGATTCTAACGC--CACTGTAGCCTCCATCGTTGGACGGCCCCGTCACCATGGGTATGTCTCATCCCGCGCGCTACCCGT--GCGCCCACAGCT-GTAACGATGCCTAACCCCGCCGCACAGAATCATGATTGGTATGGGCCAGA Zygophiala_qianensis_LWH_LNLZ_14 TGTGCAAGGCCCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTTTTCCGTAAGT------CATTGAAATCCTC-GTGATCAA-T---------------------------TTTCTCTTTTCAAACAGCCGCATGAATCTAACGC--CATTGCAGCCTCCATTGTTGGACGGCCCCGTCACCATGGGTATGTCACATCCCGCACGCCACCCGT--GCGCCCACAGCT-GTAACGATGCCTAACCCCGCCGCATAGAATCATGATCGGTATGGGCCAGA Zygophiala_qianensis_MYNYX4.8 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTTTTCCGTAAGT------CATTGAAATCCTC-GAGATCAA-T---------------------------TTTCTCTTTTCAAACAGCCGCATGAATCTAACGC--CATTGCAGCCTCCATTGTTGGACGGCCCCGTCACCATGGGTATGTCACATCCCGCACGCCACCCGT--GCGCCCACAGCT-GTAACGATGCCTAACCCCGCCGCATAGAATCATGATCGGTATGGGCCAGA Zygophiala_qianensis_MYQ_QXBS_06 TGTGCAAGG-CCGGTTTCGCCGGTGACGATGCGCCTCGTGCTGTTTTCCGTAAGT------CATTGAAATCCTC-GAGATCAA-T---------------------------TTTCTCTTTTCAAACAGCCGCATGAATCTAACGC--CATTGCAGCCTCCATTGTTGGACGGCCCCGTCACCATGGGTATGTCACATCCCGCACGCCACCCGT--GCGCCCACAGCT-GTAACGATGCCTAACCCCGCCGCATAGAATCATGATCGGTATGGGCCAGA Zygophiala_tardicresens_MWA1d TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTGTTCCGTAAGT------CATTGCCTTTCCTAGGGAACTCGA---------------------------GAAGACCT-TCAAGTTGCGGCCTGTCTCTAATGC--TGCCATAGCCTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAAATCACGCATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_trispora_HL_HKBJ_23D TGTGCAAGGGCCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATAGC-ACTCTCAGACACCTTCA---------------------------GAA--------GAGCTACCGCCTGTCTCTAACGC--TACTGTAGCTTCCATTGTCGGACGGCCGCGTCACCATGGGTATGTCACAA-CCACGCATCGTCCGT--GCGCCGACACCT-CTCACAATGCCTAACCTTGTCGCACAGAATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_CSFHGRLZ TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_CSXPGL TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_XT_NL5 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCTTCTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_ZJJ_13 TGTGCAAGGGCCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_ZJJ_14 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_ZJJ_61A TGTGCAAGGGGCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_CC_ZJJ_69 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_HL_CSPGL_53 TGTGCAAGG-CCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA Zygophiala_wisconsinensis_LHY_LB_14 TGTGCAAGGGCCGGTTTCGCCGGTGACGACGCACCTCGTGCTGTTTTCCGTAAGT------TATTCCCACTCCTGGAGACCTCCA---------------------------GAAGACCT-TCAAGTTGCGGCCTGCCTCTAATGC--TGCTATAGCTTCCATCGTCGGACGGCCGCGTCACCATGGGTATGTCACAAACCACGGATCATCTGT--GCGCCCACGCCT-CTCATAATGCCTAACCTTGTCGCACAGTATCATGATCGGCATGGGCCAGA ; END; [ The following blocks are output data for analysis step 15971 ] BEGIN TREES; TITLE Zygophiala_ACT_Consensus; LINK TAXA = TaxaForAnalysisStep15971; TREE Consensus_tree_of_100_trees = [&R] (Acremonium_sp._407_JN836733:28.99,((((Schizothyrium_pomi_PEA1a:12.0,Schizothyrium_pomi_CUA1a_S.pomi:10.0):7.005,(Zygophiala_inaequalis_GL_MMXJ_56A:0.0,Zygophiala_inaequalis_GL_MMXJ_52:0.0):24.01):6.0,(Zygophiala_qianensis_HL_MMQSG_1:9.0,(Zygophiala_qianensis_MYNYX4.8:0.0,(Zygophiala_qianensis_HL_MMGL_2:0.0,(Zygophiala_qianensis_LWH_LNLZ_14:1.0,Zygophiala_qianensis_MYQ_QXBS_06:0.0):0.0):0.0):5.0):24.01):1.005,((Zygophiala_cylindrica_ZMHS8:0.0,Zygophiala_cylindrica_ZMHS23:0.0,Zygophiala_cylindrica_ZMHS33:0.0,Zygophiala_cylindrica_ZMHS53:0.0):9.005,(Zygophiala_trispora_HL_HKBJ_23D:13.97,((Zygophiala_musae_CHC_HNBJ_2:7.99,Zygophiala_longspora_GL_GZXJ_39:10.01):1.02,(Zygophiala_tardicresens_MWA1d:9.0,((Zygophiala_emperorae_GL_QXLPPG_1:0.0,Zygophiala_emperorae_GL_QXLPPG_2:0.0,Zygophiala_emperorae_CC_WWZ_2:0.0,Zygophiala_emperorae_LYP_YX_12.1:2.0):2.98,(Zygophiala_wisconsinensis_LHY_LB_14:0.0,(Zygophiala_wisconsinensis_CC_CSFHGRLZ:0.0,(Zygophiala_wisconsinensis_CC_ZJJ_69:0.0,(Zygophiala_wisconsinensis_CC_ZJJ_14:0.0,(Zygophiala_wisconsinensis_HL_CSPGL_53:0.0,(Zygophiala_wisconsinensis_CC_CSXPGL:0.0,(Zygophiala_wisconsinensis_CC_ZJJ_13:0.0,(Zygophiala_wisconsinensis_CC_ZJJ_61A:1.0,Zygophiala_wisconsinensis_CC_XT_NL5:0.0):0.0):0.0):0.0):0.0):0.0):0.0):0.0):1.01):1.99):1.0):3.0):16.02):18.0):28.99):0.0; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87123] END;