#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 13, 2024; 20:26 GMT

TreeBASE (cc) 1994-2008

Study reference:
Heredia G., Reyes M., Aria R., & Bills G. 2001. Talaromyces ocotl sp. nov. and observations
on T. rotundus from conifer forest soils of Veracruz State, Mexico. Mycologia,
93: 528-540.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S950]

[ The following blocks are input data for analysis step 1602 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1602;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Chromocleista_malachitea
            Geosmithia_argillacea
            Geosmithia_cylindrospora
            Geosmithia_emersonii
            Hamigera_avellanea
            Monascus_purpureus
            Paecilomyces_variotii
            Sagenoma_viride
            Talaromyces_bacillisporus
            Talaromyces_catenulatus_GB6125
            Talaromyces_helicus
            Talaromyces_rotundus_GB6317
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M461]

	TITLE 'Talaromyces and Trichocomaceae LSU D1-D2';
	LINK TAXA = TaxaForAnalysisStep1602;
	DIMENSIONS NCHAR=530;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Chromocleista_malachitea           GTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCTCCTTC--GGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGCCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGTTTGCGACCAGACTCGCCTACGGGG-TTCAGCCGGCTTTCGGGCCGGTGTACTTCCCCGTGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCGAGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAAT
Geosmithia_argillacea              GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCCTTGGGGGGTCCGAGTTGTAATTTGGAGAGGATGCTTCGGGCACGGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGACGGGTGGCC-GGGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGGGGGGGCTCAGCCGGCACTCGTGCCGGTGCACTCCCCCCCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCCGGAATGTGTCGCCCTCCGGGGCGTCTTATAGCCGGGGGTGCAATGCGGCCAGCCCAGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Geosmithia_cylindrospora           GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCCCGCGGGGGTCCGAGTTGTAATTTGGAGAGGATGCTTCGGGCACGGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGACGGGTGGCC-GGGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGGGGGGGCTCAGCCGGCACTCGTGCCGGTGCACTCCCCCCCGGGCGGGCCAGCGTCGGTTCGGACGGCCGGTCAAAGGCCCCCGGAATGTAGCACCCTCCGGGGTGTCTTATAGCCGGGGGTGCAATGCGGCCAGTCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Geosmithia_emersonii               GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCTTC--GGGGTCCGAGTTGTAATTTGGAGAGGATGCTTCGGGTACGGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGACGGGTGGCC-GGGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGAACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGGGGAGGCTCAGCCGGCACTCGTGCCGGTGCATTCCCCCCCGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCCCCGGAATGTGTCGCCCTCCGGGGCGTCTTATAGCCGGGGGTGCAATGCGGCCAGCCTGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Hamigera_avellanea                 GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCTCC--GGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGATACGGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCGGAGAGGGTGAGAATCCCGTCTGGGACGGGGTGTCCGTGTCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCGGCGGGG-TTCAGCCGGGATTCGTCCCGGTGTACTTCCCCGCCGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCTCCGGAATGTATCGCCCCCCGGGGCGTCTTATAGCCGGAGGTGCAATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCACGGACGCTGGCATAAT
Monascus_purpureus                 GTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCTCC--GGGGTCCGCGTTGTAATTTGCAGAGGATGCTTCGGGCTCAGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCGGAGAGGGTGAGAATCCCGTCTGGGACGGGGTGCCTGGGTCCATGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCCTGCGGGG-TTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGTGGGCGGGCCAGCGTCGGTTCGGGTGGCCGGTCAAAGGCCCCGGGAATGTGTCGCCCTCCGGGGCGTCTTATAGCCCGGGGTGCCATGCGGCCTACCTGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Paecilomyces_variotii              GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCTCC--GGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGGCGCGGTCCCCGTCTAAGTACCCTGGAACGGGTCGTCATAGAGGGTGAGAATCCCGTCTGGGACGGGTGGCC-GTGTCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGCGGGGGTTCAGCCGGTACTCGTACCGGTGTACTCCCCCGGGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCTCCGGAATGTGTCGCCCCCCGGGGCGTCTTATAGCCGGAGGTGCAATGCGGCCAGCCTGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Sagenoma_viride                    GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCTCT--GGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGGTGCGGTCCCCGTCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGACGGGCGGCC-GTGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGCGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTGTCCGCCAGACTCGCCCGGGGGGGCTCAGCCGGCACGTGTGCCGGTGTACTCCTCTCCGGGCGGGCCAGCATCGGTTTGGGCGGCTGGTGAAAGGCCCCGGGAATGTAACACCCTCCGGGGTGCCTTATAGCCCGGGGTGCCATGCGGCCAGCCTGGACCGAGGCCCGCGCTTCGGCGAGGATGCTGGCGTAAT
Talaromyces_bacillisporus          GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCGTC--GGGGTCCGAGTTGTAATTTGGAGAGGATGCTTCGGGTGTCGCCCCCGTCTAAGTGCCCTGGAACGGGTCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGTGGTG-CCACCTGTGTGAAGCTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTGGGCACCAGACTCGCCCGGGAGGGCTCAGCCGGCACGTGTGTCGGTGCACTCCTTCCTGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCGGGAATGTAGCACCCTCCGGGGTGCCTTATAGCCTGGGGTGCCATGCGACCTGCCCGGACCGAGGAACGCGCTCCGGCTCGGACGCTGGCGTAAT
Talaromyces_catenulatus_GB6125     GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCTCCGTTC-GGGGTCCGAGTTGTAATTTGGAGAGGATGCTTCGGGACTGGCCCCCGTCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGTGGCC-TGGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCAACCAGACTCGCCCGGGGGGGCTCAACCGGCACTCGTGCCGGTGCACTCCCCCCCGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGTCCCCGGAATGTATCACCTCTCGGGGTGTCTTATAGCCGGGGATGCAATGCGACCAGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCGTAAT
Talaromyces_helicus                GTGAAGCGGCAAGAGCTCAAATTTGAAATCTGGCCCCTCC--GGGGTCCGAGTTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCGTCTAAGCGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGCGGCC-GCGCCCGTGTGAAGCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTGTCCACCAGACTCGCCCGGGGGGGTTCAGCCGGCACTCGTGCCGGTGTACTCTCCCCCGGGCGGGCCAACATCGGTTTGGGCGGCTGGTGAAAGGCCCCGGGAATGTAACACCCTCCGGGGTGCCTTATAGCCCGGGGTGTCATGCGGCCAGCCTGGACCGAGGCCCGCGCTTCGGCGAAGATGCTGGCGTAAT
Talaromyces_rotundus_GB6317        ------CGGCAAGAGCTCAAATTTGAAATCTGGCTCCTTC--GGGGCCCGAGTTGTAATTTGGAGAGGATGCTTCGGGCGTGGCCCCTATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGTGGTC-CCGCCCGTGTGAAGCTCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGAGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGTTGGCAACCAGACTCGCCCGGGAGGGCTCAGCCGGCACGTGTGCCGGTGCACTCCCCCCCGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCCCGGGAACGTAGCACCCTCCGGGGTGCCTTATAGCCCGAGGCGCCATGCGACCTGCCCGGACCGAGGAACGCGCTCCGGCTCGGACGCTGG------
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = 'Talaromyces and Trichocomaceae LSU D1-D2') = 
		N: 1-530;
CODONPOSSET  CodonPositions (CHARACTERS = 'Talaromyces and Trichocomaceae LSU D1-D2') = 
		N: 1-530;
END;
[ The following blocks are output data for analysis step 1602 ]
BEGIN TREES;
      TITLE Tb6378;
      LINK TAXA = TaxaForAnalysisStep1602;
      TREE MP_strict = [&R] (Monascus_purpureus,Chromocleista_malachitea,((((Geosmithia_cylindrospora,((Talaromyces_helicus,Sagenoma_viride),(Talaromyces_bacillisporus,Talaromyces_rotundus_GB6317)),Talaromyces_catenulatus_GB6125),Geosmithia_emersonii,Geosmithia_argillacea),Paecilomyces_variotii),Hamigera_avellanea));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr857]


END;