#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 19, 2026; 23:23 GMT TreeBASE (cc) 1994-2008 Study reference: Rothfels C.J., Li F., Sigel E.M., Huiet L., Larsson A., Burge D.O., Ruhsam M., Deyholos M., Soltis D., Stewart C., Shaw S.W., Pokorny L., Chen T., Depamphilis C.W., Degironimo L., Chen L., Wei X., Sun X., Korall P., Stevenson D., Graham S.W., Wong G.K., & Pryer K. 2015. The evolutionary history of ferns inferred from 25 low-copy nuclear genes. American Journal of Botany, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17594] [ The following blocks are input data for analysis step 16115 ] BEGIN TAXA; TITLE TaxaForAnalysisStep16115; DIMENSIONS NTAX=72; TAXLABELS Adiantum_aleuticum_WCLG Adiantum_raddianum_BMJR Alsophila_spinulosa_GANB Anemia_tomentosa_CQPW Aquilegia_coerula_Aquca_00545.1 Arabidopsis_thaliana_AT5G17840_gDNA Argyrochosma_nivea_XDDT Asplenium_nidus_PSKY Asplenium_platyneuron_KJZG 'Athyrium filix-femina URCP' Athyrium_sp_AFPO Azolla_caroliniana_cf_CVEG Blechnum_spicant_VITX Botrypus_virginianus_BEGM Cedrus_libani_GGEA Cryptogramma_acrostichoides_WQML Culcita_macrocarpa_PNZO Cystopteris_fragilis_LHLE Cystopteris_protrusa_YOWV Cystopteris_reevesiana_RICC Cystopteris_sp_XXHP Cystopteris_utahensis_HNDZ Davallia_fejeensis_OQWW Dennstaedtia_davallioides_MTGC Deparia_lobatocrenata_FCHS Didymochlaena_truncatula_RFRB Diplazium_wichurae_UFJN Dipteris_conjugata_MEKP Encephalartos_barteri_GNQG Equisetum_diffusum_CAPN Equisetum_hyemale_JVSZ Gaga_arizonica_DCDT Gymnocarpium_dryopteris_HEGQ Homalosorus_pycnocarpos_OCZL Hymenophyllum_bivalve_QIAD Hymenophyllum_cupressiforme_TRPJ Illicium_parviflorum_ROAP Leucostegia_immersa_WGTU Lindsaea_linearis_NOKI Lindsaea_microphylla_YIXP Lygodium_japonicum_PBUU Myriopteris_rufa_GSXD Nephrolepis_exaltata_NWWI Notholaena_montieliae_YCKE Onoclea_sensibilis_HTFH Ophioglossum_petiolatum_WTJG Ophioglossum_sp_QHVS Osmunda_javanica_VIBO Parahemionitis_cordata_ZXJO Peperomia_fraseri_XSZI Phlebodium_pseudoaureum_ZQYU Phymatosorus_grossus_ORJE Pilularia_globulifera_KIIX Pityrogramma_trifoliata_UJTT Plagiogyria_japonica_UWOD Pleopeltis_polypodioides_UJWU Polypodium_amorphum_YLJA Polypodium_glycyrrhiza_CJNT Polypodium_hesperium_B_IXLH Polypodium_hesperium_GYFU Psilotum_nudum_QVMR Pteridium_aquilinum_Contig12715_13944 Pteris_ensiformis_FLTD Pteris_vittata_POPJ Sceptridium_dissectum_EEAQ Thelypteris_acuminata_MROH Thyrsopteris_elegans_EWXK Tmesipteris_parva_ALVQ Vittaria_lineata_SKYV Woodsia_ilvensis_YQEC Woodsia_scopulina_YJJY Zea_mays_GRMZM2G038801_T01 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M31278] TITLE Ferns_Hsp40; LINK TAXA = TaxaForAnalysisStep16115; DIMENSIONS NCHAR=720; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Adiantum_aleuticum_WCLG ---------------------------------------------------------------------------------------------------------ATGTTGTTTGCTAGTTGGGATGAGCGGTTCGCCACAGGCATGAGTTCCCTTGGTAGCTCCATGGCTGTCGGCCACTCGGAT---------------------------------------------CTGTCTGCTGCTTGGGGTTCCATGCTCTTGTCTCATCGTCGGCTGGGGAAAATGCCT------ATCAACTCCTGCGCC------------------------------AATGGATCTCCTCACACAAAC---TCTTTGTCAAATGAACGTTATCTTGAAAGGGACTCAAAGCGTACC------------ATCAACAAATTAGAGTCTTTGCTGTATCCAGACAAGGTTGTT------GCAGAAGAAAAAATTGAGAGGCCAGTGGGTTTA---CCAATGAAGGGGCGTGCAATACTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCAACATGCACAGGCTCAGGGCTATACATTGATTCGATTATGGAATGTCAAGGCATTTATGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCTCAACTTGCGGAGGCCGGGGTCACTTA------TAA Adiantum_raddianum_BMJR ------------------------------------------------------------------------------------------------------------------------------------------ATGACTTCCCTTAGTAGTTTCACGGCCGTTGCCATTGGATACTCCGAT---------------------------------------------CTGTCTACTGCTCAGGGTTCTGTGCGCTTGTCTCATCGTTCCCTCGGAAAAATGTCT------ATCAACTTCTGCATC------------------------------AATGGAGCTCCTCACACGAAC---TCTTCGTCAAGTAAACATTTTCTTGAAAGGGATTCAAAGTGTTCC------------GTCAACAAATTAGAGTCTTTGCTATATCCAGACAAGGTGGTT------GCAGAAGAAAAAATTGAGAGGCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATACTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCAACATGCACTGGCTCAGGGCTATATATTGATTCGACCATGGAATGCCAAGGCATCTATGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCACAACTTGTGGAGGCCGAGGCCACTTA------TAG Alsophila_spinulosa_GANB ---------------------------------------------------------------------------------------------------------------------ACACAGAATCAACGTTTTCCTGTTGCAGCCAAGCTGCACGCACGCATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCGATCAACGGCTCT---------------------GATCTCTTTGTTGGGCGTCCCACGCTCTCTTCACAACATCGC---CCATCAACGTTTTCA------GTCATGTGCTGCACC------------------------------AATGGCGCCTTTCCAAGAAAT---TCCCTGGTCAATGATAATCGTCCCAGTAAGAACCCAAATAGCACT------------TTTGACAAACTAGAATCACTACTTTATCCTGGCAATGCTGTT------GCAGTAGAGAAGATTGAGACCCCTCTAGGTTTA---CCGAAGATGGGGCGTATAATTCTGAACAAACCCAGGTGTAGTGACTGTGAAACCAAAGGACTCGTTGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGACTCAATAATGGAAAGCCAAGGCATCATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCTGGAAATGTTTTGTGCTCTGCTTGTGGAGGTAGGGGCCATCTC------TGA Anemia_tomentosa_CQPW ------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCGCTTCCAGCAGCTAGGTTGGCCTGTCCA---------------------------------------------GGCCTGCTTCCTTCTACTTCACCGAAGAACCGCCCTTCCTTCTCGACCACGCTTGCC---------------TGCACT------------------------------TCTGGCGCTTCGCCAGGAATC------------------------------------------------------------------------------------------------------------TCCCTGGAAAAGATTGAGTCACCTACTGGAGTT---CCTGGGTTGGGGCCAATGGTTCATGGCAAACCTGTGTGCGGTCAATGTGAAACTAAAGGACTTGTGCTGTGTGCCACTTGCTCGGGTTCTGGTCTCTATGTTGATTCAATACTTGAGAGTCAAGGCATCATTGTCAAAGTTCGGTGCTTAGGTTGTGGTGGCTCTGGAAGTATTTTGTGCTCCAGCTGTGGAGGTAGAGGTCATATA------TAG Aquilegia_coerula_Aquca_00545.1 ---------------------------------------------------------------------------------------ATGGAGAGTATTAGTATTGTTAATTTCTGTTCGACA---------------TCATTTCCCATTGCTTTCAAATCTTCAATTGATCATCATCACAAACCAAGGTTTCAG------TTC---------------------AATGGAGGAGGAACAAGACAA------------CCCATTTCCAATAGAAAAACTCTTACAATTTCCAATCGGGCGAGAGCAGTTTCATTAAGCACAAGGGGT------CCTAGG---------------------------------------------------------------------------------------------ACCTCCTCATTTTGTTATGACAAACCTATC------CCAGAGGAGATAATTGAGGAACCAGTTACTTTG---------TTGGAAAAAAGTATAGGAAACAATCCTCGCTGCAGCAGTTGTGAAGCCAAAGGTGCAGTTCCATGTGCCACATGCTCTGGTTCTGGATTATATGTTGACTCTATAATGGAGAGCCAGGGGATCATTGTCAAAGTTCGATGCCTAGGTTGTGGTGGATCTGGAAGCATCATGTGTTCACACTGTGGAGGTTGGGGTCATACT------TAA Arabidopsis_thaliana_AT5G17840_gDNA ---------------------------------------------------------------------------------------ATGAATTCCGCTTTAGATTTTGCTTTTCCGGCTACATTTCCGGTTAAA---TCGAGTTCTGTTGGCGGACATCGGATTGCTTCCCCTGGATTCAGTTCCCGCTTAAGA------TTG------TGCTCT---------------------------------------------------CTTCCTCCTTCTTCATCTATCAAGGCTGAGTCATGTTTAAAAAGAGACGTGCACAGGCAAAGAAGCAGTCTT---------------------------------------------------------------------------------------------GAGTCAATGTTCTGTTATGATAAACCAATA------CCAGAGGAAATAATCGAGGAGCCAGTTGGATTA---TCCATGTCAGAGAGAGAGATTGGTGATAATCAGCGTTGCACTTGTTGTGAAGCTAAAGGTGCATTGCTTTGTTCCACTTGTTCTGGAACTGGTCTATATGTAGATTCCATTATGGAGAGTCAAGGCATCATTGTTAAAGTCCGTTGCTTAGGTTGTGGTGGAAGTGGTAATATTATGTGCAAACTTTGTGGTGGGCGTGGTCACGTAGGACACTGA Argyrochosma_nivea_XDDT ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCCCTTGGCTGCTCCATGGCCGTTGCAATCGGCAGCTCTGAT---------------------------------------------------------CTGTCTGGGATGCTCTCGTCTCGTCATCGCCTGCTGAAAATTTCA------ACCAATTCCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATGTGTCAAATGAGCACTGTCACTCAAAGCGTACC---------------------ATCAACAAACTGGAGTCTCTGCTCTATCCAGACAAGGTTGTT------GCAAAAGAGAAAATTGAGAGCCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATATTAAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTGGTGGTGTGTGCGACATGCACAGGCTCAGGGCTATACATCGATTCAATCTTGGAATGTCAAGGCATAATCGTGAAAGTGAGATGCTTAGGATGTGGTGGATCTGGAAGTATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Asplenium_nidus_PSKY ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTACTCTAATGGTAGCCCTTGGAGGTTCTACATCC------------------------------------------ATTTTGTTCAGCGGCCGTATGCTGTCATCTCAAAAGCGCTCATCAGGTCTCTCCAGC---------------TGCATC------------------------------AATGGAGCTCTTCCCACGGAC---CCTTTGGCAAACGGAGATTCTTCTGGGACGAACCGCAAGAGTACT------------ATCAACAAGCTGGAGTCCTTGCTCTATCCAGACAAAGTTGTG------GCGGAAGAGAAGATCGAGAGACCAGTAGGATTA---CCAGCCGCGGGGCGTGCGATATGGAACAAGCCCAAGTGTAATGACTGCGAAACCAGAGGGCTGGTGGTCTGCACAACATGCGCTGGCTCGGGACTGTACATCGACTCAATTATGGAATCTCAAGGCATAATTGTGAAAGTGAGATGCCTTGGATGTGGTGGGTCAGGAAATATTTTATGCGCTACTTGTGGAGGTCGGGGCCATGTT------TGA Asplenium_platyneuron_KJZG ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTACACAAATGGTAGCCCTTGGAGGTTCTACATCC------------------------------------------ATTTTGTTCAGCGGCCGTAAGCTTTCATCCCAACAACGC---TCATCAAGACTCTCC------ATCAAGAGCTGCATC------------------------------AATGGGACTCTTCCCACAGAT---CCTTCGGCTAATGGAGATTTCTCTGGGAAGAATCGAAAGAGTACT------------ATCAACAAGCTGGAGTCCTTGCTCTATCCGGACAAAGTTGTG------GCAGAAGAGAAGATAGAGAGACAGGTAGGTCTA---CCAGCCGTGGGGCGTGCAATATTGAACAAACCTAAGTGTAATGACTGCGAAACCAAAGGGTTGGTGGTCTGCACAACATGCACTGGCTCGGGACTGTACATCGACTCAATTATGGAATCTCAAGGCATAATAGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCACTACTTGTGGAGGTCGGGGTCATCTT------TGA 'Athyrium filix-femina URCP' ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTAGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCGGCTCCAAGCTTTCATCTCAACATCGC---TCATCATCGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTTGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTTTCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGCAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Athyrium_sp_AFPO ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTAGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCGGCTCCAAGCTTTCATCTCAACATCGC---TCATCATCGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTTTCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Azolla_caroliniana_cf_CVEG ---------------------------------------------------------------------------------------------------------------------------------------------ATTGCCTCCTCCCCTGTTTCTCGCTTCTCC------------------------------------------------------------ATCCACTCCTCTCACAACAGCTCCCTCCCCTGCCACCATCGTGCCTTCACAAAACCA------CTCGCCTCCTGCATCATCATCACCAACAGCGGCTCCAACACCAACAATGGATCCTTCGCTAGAGAT------------TACCCGGTCAATGTGGGCACGGATGTAAAAAGTACT------------ATGGACAAACTACAATCACTACTTGAAGCTGAAAATACTATCAAA---TCTGGGGAGAAGACTGAAAGAAGTGTAGGATTA------------------TCTATCCTAAATAAACCCCGATGTTATGAATGTGAA---AAAGGACTTGTGATATGTTCAACATGTGCTGGATCTGGGTTATACGTTGATTCCATTTTGGAATCCCAAGGCATTATTGTGAAAGTATGCTGTCTAGGCTGCGGTGGTTCTGGAAGCATATTATGTTTGTCGTGTGGTGGTAGGGGTCATGTA------TGA Blechnum_spicant_VITX ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGTACACATGGTAGCTCTTGGAGGTTCTACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCAACATCGC---TCATCAACGCTCTCC------GTCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTCGGCCAATGAAAATCGTCCCGGAAAGAACCGAAAGAGTACT------------ATCAACAAGCTAGAAGCCTTGCTTTATCCAGACAAAGTTGTG------GCAGAAGAGAAGATTGAGACGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCGATATGGAACAAACCCAGGTGTAATGACTGTGAAACCAAAGGAGTAGTGGTCTGTGCAACATGCACCGGCTCGGGGCTGTACATCGACTCAATCTTGGAATGTCAAGGCATAATAGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCAACGTGTGGAGGTCGGGGTCATCTC------TGA Botrypus_virginianus_BEGM ------------------------------------------------------------------------------------------------------------------------------------------ACCTTTAACTCTGGCAGTTCGTCGGTACACGCACTCGAGTGGTCCGTAGCCGACTTCCATTCA------------------------------CTTTCCGCTTCCTTCCCGATGCTGCCTTCTTCACATGGATGCGATCCTCTTAAGGCT---------------TGTTTTGTCACAGTTCGATGCGCCTTGGATAGGACGAATGGTGCCTTGCCTCGGAGG---ATTATGAGCGGTCACGCC---------------------------------------------------------------------------------------CCAGAAGAAAACAACGAGAAACATATAGAAGTG---CCTTTGACTGCTCATCCGTTTGGCAACAAACCAAGGTGTACTGGATGTGAGGAAAAGGGACTAGTGTTGTGTGCAACATGTGCAGGCTCAGGGTTGTATGTCGACTCAATTCTGGAAAGCCAAGGCATAATTGTTAAAGTCAGATGCCTAGGCTGCGGTGGTTCTGGTAGCATTATGTGCCCTGAATGCGGAGGAAGAGGTCATATAGACCAATAA Cedrus_libani_GGEA ---------------------------------------------------------------------------------------AAGGGGGCATATTCATCTTGCTCCAATCAGGGATGC---------------ATCCAGGCTATCCGCTTTTTCCTTAATACGAAAAGTAGCAGAAGTAGCACTCAG---------ATAAACTCATGCACC------------------------TTCAATAATAGCTTAATACCAAGGCACATATGCACTGCCCAGGCCAATAATAATACAAATCTAAAAGGGGATGACATAGAGCAATACAAGCGCAGTCTA---------------------------------------------------------------------------------------------GAGTCTGTCTTTTGCTATGACAAGGAAGTT------CCGGAGGAGATAATTGAGAAACCAGTTGGGTTGTCGTCTTTGAGTGAATGCAAGATTGGAAACAATCCTCGATGCAATGAATGCGAAGCCAAAGGAGTAGTTATGTGTGATACTTGTGTTGGCTCAGGGCTGTATGTCGAGTCTATCCTCGAGAGCCAAGGAATCATTGTCAAAGTCAGGTGTCTTGGCTGTGGAGGTACTGGGAATATTATGTGCTCAGAATGTGGAGGAAGAGGTCATCTT------TAA Cryptogramma_acrostichoides_WQML ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCAACTGGTAGCTCAACGACCGTTGCTATGGGGGTCTCTGAT---------------------------------------------CTGTCTGCTGCTGGGGGTTCCATGCGGTTGTCTCATCGC---CCGGTAAAAATTTCC------ATCAACTCCTGTGCC------------------------------AATGGAGCTCCTCACGCAAAC---TCTGTGTCAAATGAACAGTGTCTCAAAAGAAATCGAAACCGTACC------------GTCAACAAATTAGAGTCTTTGCTCCATCCAGACGATGTTGTT------GCAGAAGAGAAGATTGAGAGGCCTGTCGGTTTA---CCAACAACGGGGCGTGCAATACTGAACAATCCTAGGTGTAATGAATGTGAGACCAAAGGACTTGTGGTGTGTGCAACATGCACAGGCTCAGGGCTATACATTGATTCGATTCTAGAATGTCAGGGCATATTTGTAAAAGTGAGATGCTTAGGATGTGGGGGGTCTGGAAATATATTATGTTCGACTTGTGGAGGTCGGGGTCACTTA------TAG Culcita_macrocarpa_PNZO ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCCGACAATGCTGTG------GCAGAAGAGAAGATTGATACACCTGTAGGTTTA---CCGATAATGGGGCGTACAATTCTGAACAAACCCAGGTGTAGTGAATGTGAAACCAAAGGACTTGTGGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATCGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGCTCCGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGCCATCTC------TGA Cystopteris_fragilis_LHLE ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATTAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATACTGAACAAACCCAAGTGCAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_protrusa_YOWV ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACACGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTCCCAGAGAC------TCGGCCAATGAAAATTATCCCGGAAAGAACCCAAAGAGTTCT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCTGCCATGGGGCGTGCAATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACGTCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_reevesiana_RICC ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATACTGAACAAACCCAAGTGCAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_sp_XXHP ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACACGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCCGGAAAGAACCCAAAGAGTTCT------------ATCAACAAGCTAGATTCCTCGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Cystopteris_utahensis_HNDZ ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCTCTACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTCGGCCAATGAAAATTATCCGGGAAAGAACCCAAAAAGTACT------------ACCAACAAGCTAGAGTCCTCGCTTTATCCAAACAAAGTGGTG------GCAGAAGAGAAGATCGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGTGATACTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTTAGATGCCTAGGATGTGGTGGGTCTGGAAATATTTTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Davallia_fejeensis_OQWW ---------------------------------------------------------------------------------------------------------------------------------------------------ATGGCGGCTGCGAACATGGTGTCTCTCGGAGGCTCCACAGGC------------------------------------------ATTTTATTCAGAGACTCCAAGCTTTCATTTCAATACCGC---TCATCAGCACTCTGC------ATCAAGAGCTGCATC------------------------------AATGGAGCTCTTTCCAGCAAT---TCTTCGGCCAATGAAAATTGTCCAGGAAAGAACCCAAAAAGCACT------------ATCAACAAGTTAGAGTCCTTGCTTTATCCAGACAGGGTGGTG------GCAGAAGAGAAGATTGAGAGACCAGTAGGCTTA---CCGGCCATGGGGCGTGCAATTTTGAACAAACCCAAGTGTAATGATTGTCAAACCAAAGGGCTGGTTGTCTGTGCCACATGCACTGGCTCAGGGTTGTATATCGACTCAATCATGGAAAGTCAGGGCATTCTTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATACTCTATGCTCTACTTGTGGAGG---------------------- Dennstaedtia_davallioides_MTGC ------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCCCTTGGCGGTTCTATCAGCACTTTGAAGAGTGGCTCTGAT------------------------------------------TTCTCGGTTGCTGGGGTTTCCAAGCTCTCCTCTCAGCATTGC---TCATCAATGCCTTCC------GTCAATTGCTGCAAC------------------------------AATGGGGGTCTTCCCCGAAAC---TCCCTGTCCAGTGAAAACTATCCCAGGATGAACCCCAAGAGAACT------------ATCAACAAGCTAGAATCCCTCCTTTATCCAGACAAAGTAGTT------GCAGAAGAGAAGATTGAGAGGCCAAAAGGTTTA---CCGACCATGGGGCGTGCGATATTGAACGAACCCAGGTGTAATGAATGTGAAACCAAAGGACTTGTGGTGTGTGCAACATGCACTGGCTCAGGGTTGTACATTGATTCAATTATGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCTTAGGATGTGGCGGGTCTGGAAATATCTTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TAA Deparia_lobatocrenata_FCHS ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTCGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCGTTCATCTCAACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTTTGGCCAATGAAAATTGTCCTGGAAACAACCCAAAGAGCACT------------GTCAACAAGCTGGAGTCCTTGCTTTATCCAGACAAAGTTGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACGAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGCTCTGGAAATATTCTATGTTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Didymochlaena_truncatula_RFRB ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCTGCTGCACACATGGTAGCTCTTGGAGCTCCCACACCC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTCTCATCTCAACATCGTTGCTCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTTGGGCAATGAATATTTTCCAGGAAAGAACCCAAAGAGTACG------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAAAGTCGTG------GCAGAAGAGAAGATCGAGAGACCAGTAGGGTTA---CCAGACACGGGGCGTGCAATATTGAACAAACCCATGTGTAATGACTGTGAAACCAAAGGACTGGTTGTCTGTGCAACATGCACTGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATTATCGTGAAAGTGAGATGCGTAGGATGTGGTGGGTCTGGAAATATCCTGTGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Diplazium_wichurae_UFJN ---------------------------------------------------------------------------------------------------------------------AACTCATCAAATGAACGTCTTCCCTGTTGCAGGTCGGCAGCACACATGGTAGCCCTTGGAGGTTCCACAGCC------------------------------------------GTTTTGTTCAGCACCTCCAAGCTTTCATCTCAATGTCGC---TCATCATCGCTCTCC------ATCAAGAGCTGTACC------------------------------AATGGAGCTCTTCCCAGCCAT---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTTGAGTCCTTGCTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAAGCCAAGTGTAACGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGTTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Dipteris_conjugata_MEKP ---------------------------------------------------------------------------------------------------------------------------------------------ATGGGTTTTTCCGATGGCTTCATTACACCTCTTCGTGGCCTTGAGCTCCCTCAATTGCTTCTTGAG------------------------CTTTCCCCACCGATTCGAGGCCGCATCTTTGCCCAACGGCACCCTTCCGTCGTCTCC------GTCACCTGCTGCTCC------------------------------AATGGTGCCTTGCCCAGGACC---TCCCTGGTTAGTGACAATGTGCCCAGCAAGAACCCGAAAAGCACT------------GTAGACAGATTGGAATCACTCTTCAATCCTAGCAGAGCTGTG------GCAGAAGAGAAGATTGAGGCACCTACAGGAGTT---CCATCAGTAGGGCGCATAGTATATAACAAAGCAAGATGCAGTCAGTGTGAGACCAAAGGACTCGTGCTGTGTGTGACTTGTGCAGGTTCGGGGCTGTACGTTGATTCGATTTTGGAAAGCCAAGGCATTATTGTGAAAGTCAGATGTTTAGGTTGTGGGGGTTCTGGAAGTACTTTGTGTTCGCATTGTGGAGGTAGAGGTCATATG------TGA Encephalartos_barteri_GNQG ---------------------------------------------ATGGTTAGCGTTGCAGTGGCTCCCTCCTTCACAATGTACGCTGCGCGTCCTTGGTCGCTGTTGACTGATGGATCTATCAACCCCGTATCC---GTCTTTCCTAATCATAATCATATGAAGGCTCTTGAGACGAGAGATAGCAGATTGAGC------ATTAGGTCAATGAGC------------------GTCGACAATGGGGCAATTCCGAAGCACATCCCCTTCCAGGGAAATGCAAGCTTAAGAAGAGACAATGCAGGAGAGTACAAAGTTCAGCAATCGAAAAGAAATCCT---------------------------------------------------------------------------------------------GAATGCCTCTTTCGCTACGAGAAGGCCGCT------CCTGAGCAACCAATTGACAAGCCAATTGGGTTG---TCTTTGAGTGAACGAAAGATTGGAAACAATCCAAGATGCATTCGATGTGAAGCTAAGGGAGTCGTCCTGTGCCCTACTTGTACCGGTTCAGGTCTATATGTTGATTCTATTCTCGAGAGCCAAGGAATCATCGTAAAAGTCGGATGCCTTGGTTGTGGAGGCAATGGAAATATTATGTGTTCAAATTGTGGCGGAAGAGGTCATGTT------TAA Equisetum_diffusum_CAPN ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCACTTCGA------------------------------------------------------CCCTTCTGCACTACGTCCTCTCTCCTCCCCTCTAGATTG---CCTCCTATTCTTCCC---------------TTTTCC------------------------------AATCCAACCTTGCCTTCTCATCTAAAGCTGGCTAGTTGTGCACTGAAGCACAAGCACAAAAGGAGTGAGATTGGGATTTCTAGAAGCAAGCTTGTGTCCTTAGTTTGTGAACAAAAATGTGTA------GCAGAAGAGAAAATTGAGAAGCCAACAGGCATT---CCTCTGACTGCACGCTTTATCGGAGATAAGCCAGGGTGTCCAAGCTGTGAGGTCAAGGGTCTTGTTTTATGTGTCACATGCACAGGCTCGGGGTTGTATGTTGATTCCATCATGGAAAGCCAAGGCATTATTGTGAAAGTTCGCTGTCTTGGTTGCGGGGGGTCGGGAAGTATAATGTGCTCTGAATGTGGGGGGAGAGGACATCTA------TGA Equisetum_hyemale_JVSZ ------------------------------------------------------------------------------------------------------------------------------------------------------ATGGCCATAATGGCAGCACCTCCACCCTATTGCACT------------------------------------------------------------------ACTTCTCTTCTCCCCTCCAGATTGCCTCCTCTACCC---------------TTTTCC------------------------------AATCCAACCTTCCCTTGCCATCTAAAGCTGGCTAGTTGTATACTGAAGCACAAGTACGAAAGAAGTGAGATTGGGATTTCTAGAGGCAAACCTGTGTCCTTGGTTTGTGAACAAAAATGTGTA------GCAGAAGAGAAAATTGAGAAGCCCATGGGCATT---CCTCTGACTGCACGCTTTATAGGAGATAAGCCAGGGTGTCCAAGCTGTGAGGCCAAGGGGCTTGTTTTATGTATCACATGCACAGGCTCGGGGTTGTATGTTGATTCCATCTTGGAAAGCCAAGGCATTATTGTGAAAGTTCGCTGTCTTGGTTGTGGGGGGTCGGGAAGTATAATGTGCTCCGAATGTGGGGGGAGAGGACATCTC------TGA Gaga_arizonica_DCDT ------------------------------------------------------------------------------------------------------------------------------------------ATGACATCCCTTGGTAGGTCCATGGCTGTTGCAGTCCGCAGCTCTGAT---------------------------------------------CCGTCTACTGCTGGGGGTTCGATGCTCCTGTCGCATCGTCGCCCGATAAAAATTTCA------ATCAATTTCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATATGTCAAATGAACACAGTGGGCAAAGGGACACAAAGCGCACC------------ATCAACAAACTAGAGTCTTTGCTTTATCCAGACAAGGTTGTG------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAATCAAGGGGCGTGCAATATTAAACAATCCCAGATGCAATGAATGTGAGACCAAAGGACTCGTGGTGTGTGCGACATGCACAGGTTCAGGGCTATATATTGATTCTATCATGGAATGTCAGGGCATATTTGTGAAAGTAAGATGCTTAGGATGTGGCGGATCTGGAAGTATATTATGCTCTATGTGTGGAGGTCGCGGTCACTTG------TAG Gymnocarpium_dryopteris_HEGQ ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGTAGCCCTTGGAGGTTCCACAACC------------------------------------------ATTTTGTTCAGGGGCTCCAAACTTTCATCTCAACATCGC---TCATCAACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAAAC---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTAGTTTATCCAGACAAAGTGGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAATAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTATGTGCAACATGCACCGGCTCCGGGCTGTATATCGACTCAATTTTGGAATGCCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACATGTGGAGGTCGTGGTCATCTC------TGA Homalosorus_pycnocarpos_OCZL ---------------------------------------------------------------------------------------------------------------------------------------------------ATGGCGGCTGCACACATGGTAGCCCTTGGAGGTTCCACGGCC------------------------------------------ATTTTGTTAAGGGTCACCAAGCTTTCATCTCAACATCGC---CCATCAACGCTCTCC------ATCAAGAACTGCACC------------------------------AATGGAGCTCTTCCCACAGAC---CCTTCGGCCAATGAAAATTGTCCCGGAAAGAACCCAATGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCAGACAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCGATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTGGGATGCGGTGGGTCTGGAAATATTCTATGCTCAACTTGCGGAGGTCGGGGTCATCTC------TGA Hymenophyllum_bivalve_QIAD ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGATTATCGGTGGGTGTGTCGCTTCTCTGAGCGGGCTGGAGCGTTCGGGTTTCTTCTTTGGGCGTGTCTCGCCTGTATCCGGGCAAAGATCTACACAAAGGCGCCGTCCGCTTGTATCTAGCACA------------TGCTCC---------------------------ACCAATGGCGCTTTGCCGAGGAAT------TTGGTGAATGACAATCTGCCAGGCAAGAACCCAAAGAGAACT------------GTTGACAGATTGGAATACCTATTGTACCCTGACAGGGCTGTT------GCAGAAGAGAGTATTGAGACACCTACAGGCATT---CCATTATTAGGGTGCTCAATTCAAAACAATCAAAGCTGCACTCAGTGCGAGTCTAAAGGACTTGTGCTGTGTGCCACTTGTGCAGGGTCAGGGTTGTACATTGATTCAATCTTGGAAAGCCAAGGCATTATTGTGAAAGTTAAATGTTTAGGCTGTGGTGGTTCTGGAAGTATTCTGTGTCCTAGCTGTGGAGGTAGAAGTCCTCTT------TGA Hymenophyllum_cupressiforme_TRPJ ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTT------GCAGAAGAGAGTATTGAGACACCTACAGGCAGT---CCATTATTAGGGTTCTCAATTCAAAACAATCAGAGGTGCACTCAGTGTGAGTCTAAAGGACTTGTGCTGTGTGTCACTTGTGCAGGGTCAGGGTTGTACATTGATTCCATATTGGAAAGCCAAGGCATTATTGTGAAAGTTAAATGTTTAGGCTGTGGTGGTTCTGGAAGTATTCTGTGTCCTAGCTGTGGAGGTAGAAGTCATCTT------TGA Illicium_parviflorum_ROAP ------------------------------------------------------------------------------------------ATGACGAGTTTTCTATCCCAAATCTCTGCAAGTCCCCCT---------CTATATCCTTCACCCTTCAATCGAAATGCAATCCCTCTATCTCAGCTTCGATTT---------------------------TGCACCCTGTTCAATGGAGGAAAGGAACCCAGGAACATGTTCCACGCTTTCTCCCAACACAGCTCGGTTCAGGTCGCTTCAAGTTCAATACGTGACATTCAGAGATGCAAAAGCAATCTC---------------------------------------------------------------------------------------------GAATCTTTATTCTGTTATGACAAGCCTATT------CCAGAGGAAATCATTGAGAAGCCAGTAGGCCTG---TCTTTGAGTGAAAGAAATATTGGTAATAACCCTCGTTGCATCGATTGTCAAGCGAAAGGTGCAGTCTTGTGTAAAACTTGCTCCGGTTCGGGTTTATACGTTGATTCTATACTAGAGAGCCAAGGAATCATTGTGAAA????????????GGTTGTGGAGGCACTGGTAA---------------------------------------------- Leucostegia_immersa_WGTU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCAGCTGCAAATATGGCAGCCTTTGGAGGCTCTACAGCC------------------------------------------ATTTTTTTCGGGGGCTCCAAACTTTCATCTCAACATCGC---TCATCAATGCTCTGC------ATCAATAGCTGCACC------------------------------AATGGAGCTCTTCCCAGAGAC---CCTTTGGCCAATGAAAATTGTCCAGGAAAGAATCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTACTTTATCCAGACAAAGTTGTG------GCAGAAGAAAAGTTCGAGAGACCAATAGGTTTA---CCAGCCATGAGGCGTGCAGTACTGAACAAACCCAAGTGTAATGAATGTGAAACCAAAGGACTGGTTGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGACTCAATTTTGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAGTATCCTATGCTCTACTTGTGGAGGTCGCGGTCATCTC------TGA Lindsaea_linearis_NOKI ---------------------------------------------------------------------------------------------------------------------------TGCTTCCTCACTCACATTTCTTCCTGGAGGTTTCCATCCATGGCAGCCCTTAGTGGGTGTATGCCCACAACC------------------------------------ATAACTCCTGTTGCTGGGCGTCCCTCGTCGCAACATCGCCCATCTACGATGCCTTCT------GTCTTGTGCTGTACC------------------------------AATGGAGCCAAACCCAGAAGT---TCTCTGGTCAATGACAATTGTCCTGGGAAGAATGCTAAGAGTACC------------ATCAACAAACTGGAAGCCTTGCTGTATCCAGACAAAGTCGTG------GCCCAAGAGAAGATCGAGGCACCTTTAGGCTTA---CCAAAAGATGGACGTCAAATCACGGGCAAGCCCAGGTGTAACGAGTGTGAAACGAAAGGTCTAGTGGTATGCGCGACGTGCACAGGTTCAGGGCTTTACATTGACTCAATTCTTGAGTGTCAGGGGATTCTTGTCAAAGTAAGATGTCTAGGATGTGGTGGCTCCGGGAATATACTGTGCACTAACTGTGGAGGAAGGGGTCACCTT------TAA Lindsaea_microphylla_YIXP ---------------------------------------------------------------------------------------------------------------------------------------------------AGGCTTCCATCATCCATGGCAGCCCTTAGTGGGTGTATGCCCACAACC------------------------------------ATAACTCCTGTTGCTGGGCGTCCCTCGTCGCAACATCGCCCATCTACGATGCCTTCT------GTTTTGTGCTGTACC------------------------------AATGGAGCCATCCCCAATTCT------CTGGTCAAAGACAGTTGTCCTGGGAAGAATGCTAAGAGGACC------------ATCAACAAACTGGAAGCCTTGCTGTATCCAGACAAAGTCGTG------GCCCAAGAGAAGATTGAGGCACCTTTAGGCTTA---CCAAAAGATGGACGTCAAATCACGGGCAAGCCCAGTTGTAGCGAGTGTGAAACGAAAGGTCTAGTGGTATGCGCGACGTGCACAGGCTCAGGGCTTTACATTGACTCAATTCTTGAGTGTCAGGGGATTCTTGTCAAAGTAAGATGTCTAGGATGTGGTGGCTCCGGGAATATATTGTGCACTAACTGTGGAGGAAGGGGTCACCTT------TAA Lygodium_japonicum_PBUU ------------------------------------------------------------------------------------------------------------------------------------ATGGCTTTTCTCGCTAACACAGTCGCCTTTGCAAACCAGCTGCAGGGACCAACGGCC------------------------------------------TTTCTCCCGCATCGTCATCATCACGGTCATCAGCATCACTTTATCTTTCGC---------------------TGCACC------------------------------AATGGCGCTTTCCCCAGAACC---TCACTGGTAAATGACAATCTACCTAGCAAGAATCCAAAAAGTACC------------ATTGACAAATTGGAATCACTGCTGTATCCTGACAGTTGTGTG------GCACAAGAGAAGATTGAGGCACCTACGGGTATA---CCTTCAGTGGGGCGAACGATTCATAACAAGCCCAAATGCAGCCATTGTGAGACGAAAGGACTTGTGCTATGTGCAACATGTTCAGGTTCTGGATTGTACATCGATTCAATCTTGGAAAGTCAAGGCATTATTGTGAAAGTCAGATGCTTAGGATGTGGTGGTTCTGGGAGTATTTTGTGCTCTTACTGCGGGGGAAGAGGTCATACT------TAA Myriopteris_rufa_GSXD ------------------------------------------------------------------------------------------------------------------------------------------ATGGCGTCCCTTGGTAGCTCCATGGCTGTTGCAATCGGCAGCTCTGAT---------------------------------------------CAGTCTACTGCTGGGGGTTTGATGTCCTTGTCTCATCGTCGCCTGGTGAAAGTTTCA------ACCAACTTCTGTGCC------------------------------AATGGAGCTCCTCACTCAAAC---TATGTGTCAAATGAACAGTGTTTTGAAAGGGACTCAAAGCGTACC------------ATCAACAAATTAGAGTCTGTGCTCTATCGAGACAAGGTTGTT------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAACGAAGGGGCGTGCAATACTGAACAATCCTAGGTGTAATGAATGTGAGACTAAAGGACTCGTGGTGTGCGTGACATGCACAGGCTCAGGGCTATACATTGATTCAATCATGGAATGTCAAGGCATTTTCGTGAAAGTGAGATGCTTAGGATGCGGTGGATCTGGAAATATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Nephrolepis_exaltata_NWWI ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGCAGCCCTTGGAGGCTCCACAGCT------------------------------------------ATCCTGTTCAGGAGCTCCAAGCTTTCATCTCAACATCGC---TCATCAATGCTCTCG------ATCAGGGGCTGCAAC------------------------------AACGGAGCCTTTCCCAGTGATCTTTCTTCGACCTACGAAAATTGTCCAGGAAAGAACCCAAAGAGCATC------------GCCAACAAGCTAGAGTCCTTACTTTATCC----------------------------------GAGAGACCAGAAGGTTTA---CCAGCCCTGGGGCGTGCAATTTTGAACAAACCCAAATGTAATGATTGTAAAACCAAAGGGCTCATTGTCTGTGCAACATGCGCCGGCTCTGGCCTGTACATCGACTCAATCATGGAATCTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATCCTATGCTCTACTTGTGGAGGTCGGGGCCATCTT------TGA Notholaena_montieliae_YCKE ---------------------------------------------------------------------------------------------------------------------------------------------------AGGTCCTCCACAGGCATGACGTCCTTTGGTAGCTCCATG---------------------------------------------GCTGTTGCAGTCGGCGGCTCGATACCCGTGTCACATCGTCGCTTGGTGACAATGTCG------GTCAATTTCTCTGCC------------------------------AATGGAGCTCCTCACTCCAAC---TATAAGTCAAATGAACATGGTATGGAAAGGAATTCAAAGCGTACC------------ATCAACAAAATAGAGTCTCTGCTGTATCCAGAGAAGGTTGTG------GCAGAAGAGAAAATTGAGAGGCCAGTGGGTTTA---CCAATGAAGGGGCGCGCAATATTAAACAACCCTAGATGCAATGAATGTGAGACCAAAGGACTCGTGGTTTGTGCGACATGCACAGGTTCAGGGCTATA---------------------------------------------------------------------------------------------------------------------- Onoclea_sensibilis_HTFH ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCATCGGAGGTTCCACAGCC------------------------------------------CTTTTGTTCAGGGGCTCCAAGCTTTCATCTCAACAGCGC---TCTTCAATGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGCGAT---CCTGAGGTCAATGAAAATTTTCCCAGAAAGAACCCAAAGAGTACT------------ATAAACAAGCTGGAGTCCTTGCTTTATCCAGACAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACCGGCTCAGGGCTGTACATCGATTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGCGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Ophioglossum_petiolatum_WTJG ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAAAAGAGTGTGCAACTT---CCTTTGGATGCTTGTATGACAGCAAACAAAACAAAGTGTTCAGGATGCGATGAAAAAGGACTTGTATTGTGTGCAACATGTGAAGGCTCAGGATTGTATGTTGATTCAATCTTGGAAAGCCAGGGCATAATCGTGAAAGTCAGATGCTTAGGTTGTGGTGGTTCTGGTAGCATTATGTGCCCAGACTGTGGCGGGAGAGGTCATTTT------TAA Ophioglossum_sp_QHVS ---------------------------------------------------------------------------------------------------------------------------------------CAAGCTGCTTCTTCTTTCTCCTCTTTCTCTCCAGCCTTTTCTGGACATTCG---------------------------------------------ATGATTTCCACGACACCAAAGATGATAATGTCTTCTCTTTCAATCGCTTCTTCTCAGTCGATGCTGCATTTCTGT---------------------------------AATGGATGCCCTTCCTATCATTCTCCTTATGGCACCTCTCGGTGCTTC---TCTCACAGCTCCAAT---------------------------GGCGCCTTGCTCCATGAATTGAAGAAGAACAACGTCCAGCAAGAAAGGAGAGAAAAGAGTGTGCAACTT---CCTTTGGATGCTTGTATGACAGCAAACAAAACAAAGTGTTCAGGATGCGATGAAAAAGGACTTGTATTGTGTGCAACATGTGAAGGCTCAGGATTGTATGTTGATTCAATCTTGGAAAGCCAGGGCATAATCGTGAAAGTCAGATGCTTAGGTTGTGGTGGTTCTGGTAGCATTATGTGCCCAGACTGTGGCGGGAGAGGTCATTTT------TAA Osmunda_javanica_VIBO ---------------------------------------------------------------------------------------------------------------------------------------------------CACACATCGAGCGACATGGGCGCTCTCGGTGGCCTCGTTCCCTTTTTAAGCAGGCTCGAGTTATCAGAGTCCTTTCTTGGGCGTTGCACGCTTGTCTCAGGTCACATTTCTGCACATGGGCGC---CCTTCTTCTGTACCT------GTTCTATGCTGTACC------------------------------AATGGCGCTTTGCCTAGGGGC---TCCCCGGTGAATGACAATTTGCCCGGCAGGAACCCAAAGAGCACTGCAGACCTTCACCTAAGCAGATTGGAATGCCTCTTTAACCATGACAGAGCTGTG------GCAGAAGAGAAGATCGAAAAACCCACAGGTGTG---CCATCGACTGGGCGCACGATTGACAACAAACCACGGTGCACTCAGTGTGAAACCAAGGGACTTGTACTGTGTGCAACATGTGCAGGTTCAGGGTTGTACATTGATTCAATCTTGGAAAGCCAGGGCATTATTGTTAAAGTTAGATGCCTAGGCTGTGGTGGTTCTGGAAGCATTTTGTGTTCAAAATGTGGAGGAAGGGGCCATGTT------TGA Parahemionitis_cordata_ZXJO ---------------------------------------------------------------------------------------------------------------------------------------------------TCTGGCTACTGCTGGGGGTTCGATGCTCCTGTCACATCGTCG------------------------------------------CCCGGTAAAAATGTCAATCAATTCCTGTGCCAA------------------------------------TGGTGCTCC------------------------------TCACTCAAACTATATGTC?AA------------------------------AGGGATAAAAAGCGTACC------------ATCAACAAACTAGAATCTTTGCTGTATCCAGACAAGGTTGTG------GCAGAAGAGAAGATTGAGAGGCCAGCGGGTTTA---CCAATGGAGGGCCGTGCAATATCAAACAATCCCAGATGCAATGAATGTGAGACCAAAGGACTTGTGGTGTGTGGGACATGCACAGGTTCAGGGCTATATATAGATTCAATTATGGAATGTCAGGGCATATTTGTGAAAGTAAGATGCTTAGGATGCGGTGGATCTGGAAATATATTATGCTCTACTTGTGGAGGTCGCGGTCACTTA------TAG Peperomia_fraseri_XSZI ---------------------------------------------------------------------------------------------------------------------------------------------ATGGCCTCCTTACCTATACAATTACCACCCCTCCCTTCCTCTACG---------------------------------------------CTGCTCCGCCGCCGCACCCATTTCTCCAAGCTCGCCTGTTTCCCCCACTCTGCCAATGGCTCCTCCTCCTGCGGATCGGTTGCTGTTAATTCTAAGGATCCATACAGA---------------------------------------------------------------------------------TACAAAAGTCTGGAAGGTTTTTTCTCTTACGACAAACCAATA------CCAGAAGAAATTATTGATAGGCCAATTGGGCTG---GAATTAAGTGAAAAAAATGTTGGTAATAATCCTCGTTGCATCGACTGCCGGGCAAAAGGTGCAGTTCTTTGTGCGACTTGTGCTGGTACGGGATTGTATATAGATTCTATAATGGAGAGTCAAGGAATCATAGTCAAAGTCCGGTGTCTTGGTTGTGGTGGCACCGGCAACATCATGTGCTCTGAATGTGGAGGACGAGGGCACCTT------TGA Phlebodium_pseudoaureum_ZQYU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAACATGGCGTCCCTTGGAGGCTCCACAGCC------------------------------------------ATTTCATTGAGGGACTTCAAGCTTCCATCTCAATACCGC---TTATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGATCCCTTCCCAGCGAA---CCTTTGGCCAATGGAAATTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCCTGCTTTATCCTGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCATGGGCCGTGCAATTTTGAACAAACCCAAGTGTAAGGACTGTAAAACCAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCAGGGCTTTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGCGGGTCTGGAAATATTCTATGCTCTACGTGTGGAGGTCGGGGTCATCTT--------- Phymatosorus_grossus_ORJE ---------------------------------------------------------------------------------------------------------------------------------------------------ATGCTGGCTACAAGGATGGAGTCCCTTGGAGGGTCCACAGCC------------------------------------------ATTTTAGTGAGGGATTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCATC------------------------------AACGGAGCCCTTCCCACAGAA---CCTCTGGCCAATGGAAATTATCCAGGAAAGAACCCAAAGAATAGT------------ATCAACAAGTTAGAATCCCTGCTGTATCCCGACAGGGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCACAGGGCGTGCGATTTTGAACAAACCCAAGTGTAATGACTGTCGAACCAAGGGGCTGGTTGTTTGTGCGACATGCACCGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATGTTCTATGCTCTACGTGTGGAGGTCGGGGTCATCTT------TGA Pilularia_globulifera_KIIX ------------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGCTTCTAGTGGCTTCTACACCATATCTGGA------------------------------------------------------TCATCTGTTGGAGCTAAATTCTGTGTGGGACATCCCCCATCACCGTCTCTCTTA------CTCAGAAGTCCTTTC------------------------------AATGGCTCCTCCTTCGTTAGATGCTCCCTGGCTAAT------TCCCCTGGTAAGAATCCGAAGAGTACA------------AGCGAGAAACTAGAGTCTCTTTTGTATCCTGATAACCCTGTG------GCTCGAGAGCATATTGCATCCCCTGTTGGTTTG---CCAGCAAATGGACATGTAGTTTTTGATAAACCTGGATGTGCCGAATGTGAAACGAAAGGGCTAGTGCTTTGTGCAACATGCAATGGTTCAGGGCTGTATGTTGATTCAATCTTGGAAAGCCAAGGGATTATTGTTAAAGTACAGTGTATGGGATGTGGTGGCTCTGGAAATATATTGTGTGCCGTCTGTGGTGGCAGGGGTCACCTG------TAA Pityrogramma_trifoliata_UJTT ------------------------------------------------------------------------------------------------------------------------------------------ATGACAATCCTTGGTAGCTCCAGGGGCGTCGCAAGCTACAGTTCTGAT---------------------------------------------ATCTATGCTGCTGGGGCTTCCAATCTCTTGTGTCATCAAAGC?CCGTCAGAATATCC------ATAGTTTCGTGCGCC------------------------------AATGGAGCTTCATACTTAAAT---TCTGTGCGAAATGAA---AGTCTTGGAAAGACCTCAAAGCATGCC------------ATCAACAAAATAGAATCTTTGCTGTATCCAGACAAGGTTGTT------GCAGAAGAGAAGATTGAGAAGCCTGTGGGTTTA---CCAACAAAGGGGCGTGCAATATTGAACCGTCCAAGGTGTAATGATTGTGAGACCAAAGGACTTGTTGTGTGCACAACATGCACAGGCTCAGGATTATATATTGATTCAATCCTGGAATGTCAAGGCGTACTTGTAAAAGTAAGATGCTTGGGATGCGGGG-------------------------------------------------------- Plagiogyria_japonica_UWOD ---------------------------------------------------------------------------------------------------------------------------CTACAATGTTTTCCTGTTGCAGCCACGCTGCACACATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCGATCAACGGCT------------------------------CTTATCTCTTTGTTGGGCGCCCCAAGTTCTCACCACAAC---ATCGCCCATCAACGT------TTTCAGT------?C------------------------------GATGGTGCCTTTCCAAGAAAA---TCCCTGGTCAATGATAATCGTCCAAGTAAGAGCTCAAAGAGCACT------------ATCAACAAACTAGAATTCCTACTCTATCACGACAATGCTGTG------GCAGAAGAGAAGATTGAGGCACCTGTAGGTTTA---CCGATGATGGGGCGTGCAATTCTGGACAAACCCAGGTGTAGTGAATGTGAAACCAAAGGACTAGTGGTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCCGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGCCATCTC------TAA Pleopeltis_polypodioides_UJWU ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACGAGCATGCAGTCCCTCGGAGGGTCCACATCC------------------------------------------GTTTTGTTGAGGGACTCCAAGCTTTCATCTCAGTACCGA---GCATCAGCGCTCTCC------ATCAAAAACTGCATC------------------------------AACGGAGCCCTTCCCAGCGAA---CCCTTGGGCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------GTCAACAAGCTAGAGTCCCTGCTATATCCCAACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGGTTA---CCGGCCATGGGGCGTGCAGTTTTTAACAAACCCAAGTGTGATGACTGTCAAACCAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCGGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATGTTCTATGCTCTACGTGTGGAGGTCGGGGGCACCTT------TGA Polypodium_amorphum_YLJA ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAGCATGGAGTTTCTTGGAGGGTCCACAGCC------------------------------------------ATTTTATTGAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGAGCCCTTCCCAGCGAA---CCTTTGGCGAATGGAAATTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATCGAGGGACCAGTAGGCTTA---CCGGCCACGGGGCGTGCAATTTTTAACAAACCCAAGTGTAATGACTGTCAAACGAAGGGGCTGGTTGTCTGTGCGACATGCACTGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATCGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACGTGTGGAGGTCGGGGGCATCTT------TGA Polypodium_glycyrrhiza_CJNT ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTTGGCTACAAGCATGGAGTTCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTATTCAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATTAAGAACTGCACC------------------------------AACGGAGCCTTTCCCAGCGAA---CCTTTGGCCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAATCCCTACGTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCGTGGGGCGTGCAATTTTTAACAAACCCAAGTGTATGGACTGTCAAACCAAGGGGCTGGTTGTCTGTGCAACATGTACTGGCTCAGGGCTGTACATCGACTCGATTATGGAAAGTCAGGGCATTATTGTGAAAGTGAGATGCCTAGGATGTGGTGGGTCTGGAAATATTCTATGCTCTACATGTGGAGGTCGGGGTCATCTT------TGA Polypodium_hesperium_B_IXLH ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGAGTAGT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATCGAGGGACCAGTAGGCTTA---CCGGCCACGGGGCGTGCAATTTTTAACAAACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Polypodium_hesperium_GYFU ------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGGAGTTCCTTGGAGGTTCCACAGCC------------------------------------------ATTTTATTCAGGGACTCCAAGCTTTCATCTCAATACCGC---TCATCAGCGCTCTCC------ATCAAGAACTGCACC------------------------------AACGGAGCCCTTCCCAGCGAA---CCTTTGGCCAATGGAAACTATCCAGGAAAGAACCCAAAGAGTAGT------------ATCAACAAGCTAGAGTCCCTACGTTATCCCGACAGAGTGGTG------GCAGAAGAGAAGATTGAGGGACCAGTAGGCTTA---CCGGCCGTGGGGCGTGCAATTTTTAACAAACCCAAGTGTA-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Psilotum_nudum_QVMR TCGAAATTACTTGGCATTGGGATTGAGATTCACTGCAGCCCAAGGATGGCTGTTTTGGGTGGCGGATGTGGGTGCGATATTTATGCAGCAAACAGGCCTGTGCATCTCTCTGAGCATGGCTTCTGTAAAGTGTTTTCGTTGTGCGTGATGCCTTCGTCTCCACCAAGGCTCGCTTCTCTCAATTCTTCTTTTGTCCGAGCTCTGTGTAGC---------------------------------------------------------------------------------------------------------------------------------CATGGTGGTTTCTCCCGGAGA------ACTCAGGTTAGTGGCATGCTGGGAAGGAATTCTCTGAATGGTACAAACTACTACAAAAATGGCTTAGGATTTGACTTTCATGAAATCAGATCTAGT------TCTGAAGAGAATGAAGGGAAACTGGTAGAAGTA---TCTTTGACTACATGCTTAATTGGAAACAAAGCAGTGTGTACTCAATGTGATTCCAAGGGACTTGGACTATGTGCAACATGTGCTGGCTTGGGATTATATGTTGATTCAATTTTGGAAAGTCAAGGCATAATTGTGAAAGTTAAATGCATTGGTTGTGGTGGTTCTGGTAGCATCTTGTGCTCAGGATGTGGAGGGAAAGGTCATCTT------TAA Pteridium_aquilinum_Contig12715_13944 ------------------------------------------------------------------------------------------------------------------------------------------ATGACAGCCCTAGGTGGTTCCATTGCCACTTTGGTGAGTGGC---------------------------------------------------TCCGCTGCTGGTGGTTCCAAGCTCTCCTCTCATCATCGC---CCATCAATGGTTTCT------ATCACCTGCTGCACC------------------------------AATGGCAGTCTTTCCGGAAAC---TCCATGTACAATGAAAATTGCCCTGGAAAGAACCCAAAGAGTACT------------ATCAACAAGCTAGAATCCTTGCTTTATTTAGACAAAGTTGT{AG}------GCGGAGGAGAAGATTCAGACGCCAGTAGGTCTG---CCAACCATGGGGCGTGCTATATTGAACAACCCCAGGTGTAATGAATGTGATACCAAAGGACTCGTGGTGTGCGCAACATGTACTGGCTCAGGGTTGTACATCGATTCAATTATGGAATGTCAAGGCATATTTGTGAAAGTGAGATGC--------------------------------------------------------------------- Pteris_ensiformis_FLTD ---------------------------------------------------------------------------------------------------------------------------------------------------ATGACGAGCTCCAAGGCAGTTGCAATCTGCAGCTCTAAT---------------------------------------------CTGTCGGCTACAGGGGCTTTCAAGCTCTTGTGTCATCCTAGCCTGGTGAGAATATCC------ATCAATTCTTGCTCC------------------------------AATGGAGCTCCGTACACAAAT---------------------------------------------------------------------------------------TCCCTGAAAGTTGTT------GCAGAAGAGAAGATTGAGAGGCCCATCGGTTTA---CCCACAAAGGGTCGTGCAATATTGAACAATCCAGGATGTAATGATTGTGAGACTAGAGGACTTGTTGTGTGCGCAACATGCACAGGCTCAGGACTATATATCGATTCAATCCTGGAATGTCAAGGCATATTTGTGAAAGTAAGATGCTTGGGATGCGGCGGATCTGGAAATATTTTATGCTCAACTTGCGGAGGTCGCGGCC-------------- Pteris_vittata_POPJ ------------------------------------------------------------------------------------------------------------------------------------------ATGACGTCCCTCGGTAGCCCCAGGGCAGTTGCAATCTGCAGTTCTAGT---------------------------------------------CTTTCGGCTGCCGGGGTGTCCAAGCGCTTGTGTCATCGTGGCCTGGTGAGAATATCC------ATCAATTCATGCGCC------------------------------AATGGAGCTCTTAACGCAAAT---TCCGTGTCAAATGAACAGTGTCTCGACAGGAACTCCAAGGGCACC------------ATGAACAAATTAGAATCTTTGCTCTATCCAGACAAGGTTGTT------GCAGAAGAAAAAATTGAGAGGCCAGTTGGTTTA---CCAACGAAGGGTCGTGCAATATTGGACTATCCAAGGTGTAATGACTGTGAGACCAAAGGACTTGTTGTGTGTGCAACATGCACAGGCTCGGGGCTATATATTGATTCAATCCTGGAATGTCAAGGCATATTTGTGAAAGTAAGATGCTTGGGATGCGGTGGATCTGGAAATATTTTATGCTCAACTTGTGGAGGTCGGGGTCACTTG------TAG Sceptridium_dissectum_EEAQ ---------------------------------------------------------------------------------------------------------------------------------ATGGCCATCTCGGTACACGCTCTCGCGTGGTCCTTGGCCGATTTTCGTCAATTTCCCGCTTCCTTCCCG---------------------------------------------------ATGCTACCTTCTTCACATGGATGCGCGTCGCTTAAGACT---------------TGTTTTGTCACAGTTCGCTGCGCCCTGGATAGAACGAATGGTGCCTTGCCTCGGAGG---ATTATGAGCGGCCGCGTC---------------------------------------------------------------------------------------CCGCAAGAGAACAAAGAGAAACATTTAGAAGTG---CTTTTGACTGCTCACCCGATTGGCAACAAATCAAGGTGTACTGGATGTGAGGAAAAGGGACTAGTGTTGTGTGCAACATGTGCAGGCTCAGGGTTGTATGTCGATTCGATTTTGGAAAGCCAAGGCATAATTGTTAAAGTCAGATGCCTAGGCTGTGGTGGTTCTGGCAGCATCATGTGCCCTGAATGCGGAGGAAGAGGTCATGTT------TAG Thelypteris_acuminata_MROH ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGTCTGCACAAATGGTAGCCCTCGGAGGTTCAACAAAC------------------------------------------ATTTTGTTCGGGGGCTTCAAGCTTTCATCTCAACAGCGC---TCATCAACGCTCTTT------ATCAAGAACTGCATC------------------------------AATGGAGCTCTTCCTGCAGAG---CCTTCGGCCTATGAAAATTGTCCCGGAAAGAATCCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTTTATCCAGATAAAATTGTG------GCAGAAGAGAACATTGAGAGGCCAGTAGGTTTG---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCAACATGCACAGGCTCAGGGCTGTACATTGACTCGATTTTGGAATGTCAAGGCATAATTGTGAAAGTGAGATGCCTAGGATGCGGTGGGTCTGGAAATATTCTATGCTCTACTTGTGGAGGTAGGGGTCATCTC------TGA Thyrsopteris_elegans_EWXK ------------------------------------------------------------------------------------------------------------------------------------------ATGGCAGTCCTTGGTGGGTGCGTCGCCCCTCCCATCAACGGCTCTGAT---------------------------------------------CTCTTTGGTGCGCGTTCCAAGCTCTCATCACAACATCGC---CCATCAACGTTTTCA------GTCATGTGCTGCACC------------------------------AATGGCGCCTTCCCGAGAAAC---TCCTTGGTCAATAATGATCGTCCCGGTAAGAACCCAAAGAGCACT------------ATTGACAAACTAGAATCCCTGCTCTATCCCAACAATGCTGTG------GCGGAAGAGAAAATTGAGACACCTGTAGGATTA---CCGATGATGGGGCGTACAATTCTGAACAAACCCAGGTGTAGTGAATGTGAAGCCAAAGGACTTGTGTTGTGTGCAACGTGCACCGGTTCAGGGTTGTACATTGATTCGATACTGGAAAGCCAAGGCATTATTGTGAAAGTGAGATGTCTAGGATGTGGTGGTTCTGGAAATATTTTGTGCTCTACTTGTGGAGGTAGGGGTCATCTC------TGA Tmesipteris_parva_ALVQ ------------------------------------------------------------------------------------------------------------------------------------------ATGGGCGCTTTGGGCGCCTGTGGGCGCCTCACTTTTGCAGCAAGCGTGCCTGTGGATCTGCCTGATCGTGGC---------------------CTTTGTGAAGTGCGGGGGCGGATTTCTCTGAGTTCATCTTTTGTCCCAGCGCTGCAT------AGCTTGGATGGTACC------------------------------GACGGCGGTTTGTCACGGAGA------ACTCAGGTTAGTGGCATGCTTGGCAGGAATTCTATGAGTGGTTCAAACTGCTACAGAAATGGCTTGGAATCTATCTTTCACCAAATCAGATCTATT------CCTGAAGAGAATGAACAGAAATTGGTGGAAGTG---CCTTTGCCTGTGTGCATAATTGGCAACAAACTGGTGTGTATTCAATGTGATTCCAAGGGACTTGTACTATGTGCAACATGTGCTGGCTCAGGATTGTATGTTGATTCAATCTTGGAGAGTCAAGGCATAATTGTGAAAGTTAAATGCATTGGTTGTGGTGGTTCGGGTAGCATCATGTGCTCAGGATGTGGAGGAAAAGGTAAATTT------TGA Vittaria_lineata_SKYV ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCGGGGAAAATACATGCTATACACAACAATATTAATTGTGATGAATGTGAGGCGAAAGGACTGGTGGTTTGTGTCACATGCTCAGGTTCAGGGCTGTACGTTGATTCAATCATGGAAAGTCAAGGGATTTTCGTGAAAGTGAGATGCCTAGGTTGTGGCGGCTCTGGTAGTACATTATGCACAACTTGTGGTGGTAGAGGGCATTTAAAACTTTGA Woodsia_ilvensis_YQEC ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCACACATGGTAGCCCTCGGAGGTTCCACAGCC------------------------------------------ATTTTGTTCAGGAGCTCCAAGCTTTCATCGCAACATCGC---TCATCGACGCTCTCC------ATCAAGAGCTGCGCC------------------------------AATGGAGCTCTTCCCAGCGAT---TCTTCGGCCTATGAAAATTGCCCGGGAAAGAACTCTAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTCTATCCAGATAAAGTCGTG------GCAGAAGAGAAGATTGAGAGGCCAGTAGGTTTA---CCAGCCGTGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCGACATGCACCGGCTCCGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTGAGATGCCTAGGATGCGGTGGGTCTGGAAATATCCTCTGCTCTACTTGTGGAGGTCGGGGTCATCTC--------- Woodsia_scopulina_YJJY ---------------------------------------------------------------------------------------------------------------------------------------------------ATGTCGGCTGCCCACATGGTAGCCCTTGGAGGTTCCACAATC------------------------------------------ATTTTGTTCAGGGGCTCCAAGCTTTCATCGCAACATCGC---TCATCGACGCTCTCC------ATCAAGAGCTGCACC------------------------------AATGGAGCTCTTCCCAGTGAT---CCTTCGGCCTTCGAAAATTGTCCCGGAAAGAACTCAAAGAGTACT------------ATCAACAAGCTAGAGTCCTTGCTCTATCCAGATAAAGTCGTG------GCAGAGGAGAAGATTGAGAGGCCAGTAGGTTTG---CCAGCCATGGGGCGTGCAATATTGAACAAACCCAAGTGTAATGACTGTGAAACCAAAGGACTGGTGGTCTGTGCGACATGCACTGGCTCAGGGCTGTACATCGACTCAATTATGGAATGTCAAGGCATAATGGTGAAAGTCAGATGCCTAGGATGCGGTGGGTCTGGAAATATCCTATGCTCTACTTGTGGAGGTCGGGGTCATCTC------TGA Zea_mays_GRMZM2G038801_T01 ---------------------------------------------------------------------------------------AGACTTGCGCGCGCCTCCGCTGCTGCGACTGCGAGCCCAAGAAAAATTTTCCTCTACGAGCGCATGGAGGTGTCCGCTGGGCTCCGGCTGCCGCCCGTCGCTGCGGCAGCGTCGCTCCTTGGCTGTCGG---------TCCGCGTCGGTGCCGCCGCGCGCGGCGGCTTCCCATTCTGTGCGGTCCGTGTCCCGCGCGGTTAAGATCAGAGCAGCTGCAATTAACGGCCTCCAAAGAAACAGAAGTAATCTC---------------------------------------------------------------------------------------------GAATCATTATTCTGCTACGACAAATCTGTC------CCCGAGCAGGACATTGGAGAACCATCTGGTCTA---AATCTGGAAAAGAAGAATGTCGGGGACAAGCCTCCCTGCTCAAGCTGTGAAGCTAAAGGTGCCTTGCTGTGTGCAACGTGCGCTGGTTCAGGCTTGTACGTCGACTCGATACTAGAGAGCCAGGGAATCATCGTGAAAGTCAGATGCCTAGGTTGCGGTGGAACTGGGAACATCATGTGCTCCAAATGTGGAGGCCGTGGGCATACA------TAA ; END; BEGIN SETS; CHARSET codonPos1 (CHARACTERS = Ferns_Hsp40) = 106 109 112 115 118 121 124 127 130 133 136 139 142 145 148 151 154 157 160 163 166 169 172 175 178 181 184 187 190 193 196 199 202 205 208 211 214 217 220 223 226 229 232 235 238 241 244 247 250 253 256 259 262 265 268 271 274 277 280 283 286 289 292 295 298 301 304 307 310 313 316 319 322 325 328 331 334 337 340 343 346 349 352 355 358 361 364 367 370 373 376 379 382 385 388 391 394 397 400 403 406 409 412 415 418 421 424 427 430 433 436 439 442 445 448 451 454 457 460 463 466 469 472 475 478 481 484 487 490 493 496 499 502 505 508 511 514 517 520 523 526 529 532 535 538 541 544 547 550 553 556 559 562 565 568 571 574 577 580 583 586 589 592 595 598 601 604 607 610 613 616 619 622 625 628 631 634 637 640 643 646 649 652 655 658 661 664 667 670 673 676 679 682 685 688 691 694 697 700 703 706 709 712 715 718; CHARSET codonPos3 (CHARACTERS = Ferns_Hsp40) = 108 111 114 117 120 123 126 129 132 135 138 141 144 147 150 153 156 159 162 165 168 171 174 177 180 183 186 189 192 195 198 201 204 207 210 213 216 219 222 225 228 231 234 237 240 243 246 249 252 255 258 261 264 267 270 273 276 279 282 285 288 291 294 297 300 303 306 309 312 315 318 321 324 327 330 333 336 339 342 345 348 351 354 357 360 363 366 369 372 375 378 381 384 387 390 393 396 399 402 405 408 411 414 417 420 423 426 429 432 435 438 441 444 447 450 453 456 459 462 465 468 471 474 477 480 483 486 489 492 495 498 501 504 507 510 513 516 519 522 525 528 531 534 537 540 543 546 549 552 555 558 561 564 567 570 573 576 579 582 585 588 591 594 597 600 603 606 609 612 615 618 621 624 627 630 633 636 639 642 645 648 651 654 657 660 663 666 669 672 675 678 681 684 687 690 693 696 699 702 705 708 711 714 717 720; CHARSET exclude (CHARACTERS = Ferns_Hsp40) = 1-339 718-720; CHARSET codonPos2 (CHARACTERS = Ferns_Hsp40) = 107 110 113 116 119 122 125 128 131 134 137 140 143 146 149 152 155 158 161 164 167 170 173 176 179 182 185 188 191 194 197 200 203 206 209 212 215 218 221 224 227 230 233 236 239 242 245 248 251 254 257 260 263 266 269 272 275 278 281 284 287 290 293 296 299 302 305 308 311 314 317 320 323 326 329 332 335 338 341 344 347 350 353 356 359 362 365 368 371 374 377 380 383 386 389 392 395 398 401 404 407 410 413 416 419 422 425 428 431 434 437 440 443 446 449 452 455 458 461 464 467 470 473 476 479 482 485 488 491 494 497 500 503 506 509 512 515 518 521 524 527 530 533 536 539 542 545 548 551 554 557 560 563 566 569 572 575 578 581 584 587 590 593 596 599 602 605 608 611 614 617 620 623 626 629 632 635 638 641 644 647 650 653 656 659 662 665 668 671 674 677 680 683 686 689 692 695 698 701 704 707 710 713 716 719; END; [ The following blocks are output data for analysis step 16115 ] BEGIN TREES; TITLE Ferns_Hsp40; LINK TAXA = TaxaForAnalysisStep16115; TREE Hsp40_bestREP3 = [&R] (Pteridium_aquilinum_Contig12715_13944:0.09434517,Dennstaedtia_davallioides_MTGC:0.0732217,((((Gymnocarpium_dryopteris_HEGQ:0.0276336,(Cystopteris_utahensis_HNDZ:0.02113066,((Cystopteris_protrusa_YOWV:0.00595527,Cystopteris_sp_XXHP:1.0E-8):0.00405765,(Cystopteris_fragilis_LHLE:1.0E-8,Cystopteris_reevesiana_RICC:1.0E-8):0.01385707):0.00292677):0.01508155):0.00445719,(((Blechnum_spicant_VITX:0.04789971,(((Athyrium_sp_AFPO:0.0029183,'Athyrium filix-femina URCP':0.00585935):0.00295025,Diplazium_wichurae_UFJN:0.01176989):0.00591008,((Onoclea_sensibilis_HTFH:0.02825151,(Woodsia_ilvensis_YQEC:0.02151132,Woodsia_scopulina_YJJY:0.02101027):0.02148916):0.0041439,Deparia_lobatocrenata_FCHS:0.02845988):1.0E-8):1.0E-8):0.00591,Homalosorus_pycnocarpos_OCZL:0.02276222):0.00347334,(((Asplenium_platyneuron_KJZG:0.04603823,Asplenium_nidus_PSKY:0.07040234):0.07818435,((Didymochlaena_truncatula_RFRB:0.0483076,Leucostegia_immersa_WGTU:0.03712075):0.00457055,((((((Polypodium_hesperium_GYFU:1.0E-8,Polypodium_glycyrrhiza_CJNT:0.01099624):0.02170525,((Polypodium_amorphum_YLJA:1.0E-8,Polypodium_hesperium_B_IXLH:1.0E-8):0.01829246,Pleopeltis_polypodioides_UJWU:0.03640874):0.00294066):0.00335132,Phlebodium_pseudoaureum_ZQYU:0.02111271):1.0E-8,Phymatosorus_grossus_ORJE:0.04606724):0.0453343,Davallia_fejeensis_OQWW:0.04667994):0.02870611,Nephrolepis_exaltata_NWWI:0.09786247):0.02622837):0.00797114):0.00404709,Thelypteris_acuminata_MROH:0.0477919):1.0E-8):0.00164996):0.04758495,((Lindsaea_linearis_NOKI:0.01135498,Lindsaea_microphylla_YIXP:0.03269354):0.27349486,(Azolla_caroliniana_cf_CVEG:0.52091775,((Thyrsopteris_elegans_EWXK:0.03626515,(Alsophila_spinulosa_GANB:0.07575026,(Culcita_macrocarpa_PNZO:0.01845334,Plagiogyria_japonica_UWOD:0.04058671):0.00859152):0.00708747):0.02529277,(Pilularia_globulifera_KIIX:0.4580212,(((Hymenophyllum_cupressiforme_TRPJ:0.03321098,Hymenophyllum_bivalve_QIAD:0.01217113):0.1316066,((Osmunda_javanica_VIBO:0.0462884,(((Equisetum_hyemale_JVSZ:0.03194086,Equisetum_diffusum_CAPN:0.03737608):0.56818859,(Encephalartos_barteri_GNQG:0.21016777,(Cedrus_libani_GGEA:0.13103511,((Illicium_parviflorum_ROAP:0.0846254,Peperomia_fraseri_XSZI:0.31177199):0.05156355,(Arabidopsis_thaliana_AT5G17840_gDNA:0.42663702,(Zea_mays_GRMZM2G038801_T01:0.40057061,Aquilegia_coerula_Aquca_00545.1:0.22755005):0.06112349):0.10367351):0.20108352):0.0307299):0.28307553):0.04652254,((Botrypus_virginianus_BEGM:0.04260825,(Sceptridium_dissectum_EEAQ:0.01754258,(Ophioglossum_sp_QHVS:1.0E-8,Ophioglossum_petiolatum_WTJG:1.0E-8):0.67095768):0.02734176):0.14618077,(Psilotum_nudum_QVMR:0.11517044,Tmesipteris_parva_ALVQ:0.06109417):0.26811645):0.11075622):0.15155819):0.0994746,Dipteris_conjugata_MEKP:0.14940565):0.00623791):0.04641834,(Lygodium_japonicum_PBUU:0.10365706,Anemia_tomentosa_CQPW:0.40789335):0.06093118):0.13493144):0.00212253):0.01449723):0.03728385):0.0754465):0.00689072,((((Myriopteris_rufa_GSXD:0.03137586,(Argyrochosma_nivea_XDDT:0.06242097,(Gaga_arizonica_DCDT:0.03749962,(Parahemionitis_cordata_ZXJO:0.12997729,Notholaena_montieliae_YCKE:0.0520172):0.00667909):0.04638476):0.01533138):0.01819484,((Adiantum_aleuticum_WCLG:0.01763395,Adiantum_raddianum_BMJR:0.06206823):0.02449128,Vittaria_lineata_SKYV:0.42483087):0.00791562):0.02059815,Cryptogramma_acrostichoides_WQML:0.08119521):0.00809165,(Pteris_vittata_POPJ:0.05483769,(Pteris_ensiformis_FLTD:0.09467804,Pityrogramma_trifoliata_UJTT:0.09184443):0.03529796):0.03664846):0.13478934):0.01179094); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr87509] END;