#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 12, 2025; 11:07 GMT TreeBASE (cc) 1994-2008 Study reference: Farmer S., & Schilling E. 2002. Phylogenetic analyses of Trilliaceae based on morphological and molecular data. Systematic Botany, 27(4): 674-692. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S953] [ The following blocks are input data for analysis step 1612 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1612; DIMENSIONS NTAX=27; TAXLABELS Daiswa_fargesii Daiswa_polyphylla Daiswa_thibetica Daiswa_violacea Kinugasa_japonica Paris_incompleta Paris_tetraphylla Paris_verticillata Trillium_camschatcense Trillium_chloropetalum Trillium_decipiens Trillium_discolor Trillium_erectum Trillium_govanianum Trillium_grandiflorum Trillium_lancifolium Trillium_maculatum Trillium_ovatum Trillium_petiolatum Trillium_pusillum Trillium_recurvatum Trillium_reliquum Trillium_rivale Trillium_rugelii Trillium_sessile Trillium_undulatum Veratrum_mackii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M473] TITLE 'ITS-veratrum.nex'; LINK TAXA = TaxaForAnalysisStep1612; DIMENSIONS NCHAR=659; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=- GAP= #; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Daiswa_fargesii TCGAGATAATAAATATGGTCGGAAGA-TTGTGAACTCGTGAAGGAA-TGAT-GATTATGGTGGAGGGTTCGTCCCGAAGCCAA-AGCCCC-TACAACCCTTGAGTCGAAAGGGAGCCATAGGCGTGGC---ACGACGCATGTGTGGGTGGGG--CGCTAACAAAACTCGGCGCAACAAGCGTCAAGGAACGAGTATGTGAATACGA-CCCATTGTCATTAGCC-GATCAGTGGTCT---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGATCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTCTTTGAACGCAAGTTGCGCCCGATGTCATTCGGCAAAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACGCCTGTGGGTCGAAAGTTTGGCACGGATGTGGAGATTGGCCTCCCGTGTCC-TTGT----GCGCGCGGTAGGTTGAAGAGT--GGGAT--GCCAATGGAGACGGACACGGCGAGTGGTGGATATGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGGGG--------CCCTT-GTGACACCCAGTATGGTTGCGC---TGTAT------ Daiswa_polyphylla TCGAGATACGAAATGTGGTCGGAAGA-TTGTGAACTTGTGAACGAA-TGAT-GATTATGGTGGAAGGTTCGTCCCGAAGCCAA-AGCCCC-TACACCCCTTGAGTCGAAAGGGAGCCATAGGCGTGGC---ACGGCGCATGTGTGGGTGGGG--CGCTAACAAAACTCGGCGCAACAAGCGTCAAGGAATGAGTATGTGAATACGG-CCCACTGTCATTAGA-TGATCAGTGGTCT---TATGTTTCACAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGTCATTCGGCAAAGGGCACGCCTGCCTGGGCGTCATGTCTTGCGTCGCTCGGTGCCAACTATGCCCGTGGGTCGAAAGTTTGGCACGGATGTGGAGATTGGCCTCTCGTGTCC-TTGT----GCGCGCGGTAGGCTAAAGAGT--GGGAT--GCCAACGTAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGGGG-------CCCCTT-ATGACACCCAACATGGTTGCGC---TGTAC------ Daiswa_thibetica TCGAGATACTAAATGTGGTCGGAAGA-TTGTGAACTCGTGAACGAA-TGAT-GATTATGGTGGAGGGTTCGTCCCGAAGCCAA-AGCCCT-TACACCCCTTGAGTCGAAAGGGAGCCATAGGCGTGGC---ACGGCGTATGTGTGGGTGGGG--TGCTAACAAAACTCGGCGCAACAAGCGTCAAGGAACGAGTATGTGAATGCGG-CCCACTGTCATT-GGCTGATCAGTGGTCT---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGTCATTCGGCAAAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACTCCTGTTGGTCGAAAGTTTGGCATGGATGCGGAGATTGGCCTCTCGTGTCC-TTGT----GCACACGGTAGGTTGAAGAGT--GGGAT--GCCAACGGAGACGGACACGGCGAGTGGTGGATGTGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTTGGGGGA-------CCCTT-GTGACACCCAGCATGGTTGCGC---TGTAT------ Daiswa_violacea TCGAGATACTAAATGTGGTCGGAAGA-TTGTGAACTTGTGAACGAA-TGAC-AATTATGGTGGAGGGTTCGTCCCGAAGCCAA-AGCCCC-TACACCCATTGAGTCGAAAGGGAGCCATAGGCGTGGC---ACGGCGCATGTGTGGGTTGGG--CGCTAACAAAACTCGGCGCAACAAGCGTCAAGGAACGAGTATGTGAATGCGG-CC-ACTGTCATTAGC-TGATGAGTGGTCG---TATGTTTCACAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAAAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACGCCCGTGGGTCGAAAGTGTGGCACTGATGTGGAGATTGGCCTCTCGTGTCC-TTGT----ACGCGCGGTAGGCTGAAGAGT--GGGAT--GCCAACGGAGACGGACACGATGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG-------CCCCTT-ATGACACCCAACATGGTTGCGT---TGTAT------ Kinugasa_japonica TCGAGATACAAAATGTGGTCGGAAGA-CTGTGAACTCGTGAACAAA-TGAA-AATTATGGTGGAGGGTTCATCCTGAAGCCAA-TGCCTC-TACCCT--TTGAGTCGAAAGCGAGCCATAAGCGTGGC---ACGGCGCATGTGTGGGTTGGG--CGCTAACAAAACCCGACGCAACACGCGTCAAGGAATGAGTATGTGAATGCGG-CCCACTGTCTTT-GGTCGATGCGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGACAGAGGGCACGCCTGCTTGGGCGTCACGTCTTGTATCGCTCGGTGCCAACTGCGATAGTGGGTCGAAAGTGTGGCATGGATGTGGAGATTGGCCTCCCGTGCCT-TTGT----GCGTGCGGTGGGTTGAAGGGT--GAGAT--GCCAACGGAGACGGACACGGCGAGTGGTGGAAGCGAGCCGGACGTCGTGGTCTCGTGCTCTAAAGGCTCGGAGT-------CCCCTT-GTGACACCCAATAGGGTTACGC---TGCAC------ Paris_incompleta TCGAGATATGAAATGTAGCTGGAAGA-CTGTGAACTCGTGAATGAA-TGAT-GATTTTGGTGGAGGGTCCGTCCTGAAGCCAA-TACCCC-TGCCCT--TTGAGTCGAAAGCGAGCCATAGGCATGGC---ACGACGTATGTGTGGGTGGGGGGCGCTAACAAAATCCGACGCAGCATGCGTCAAGGAACGAGTACGTGAATGAGG-CCTACT-TCATT-GGTTGATGAGTGGTCC---TATGTTTCGTAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCATCGCTCGGTGCCAACTACGCTCGTGGGTCGAAAGTATGGCACTGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGTGCAGTGGGTTGAAGAGT--GGGATATGCCAACGGAGACGGACACGACGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCATCCTCTAAAGGCTCGGGGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGC---TGCAA------ Paris_tetraphylla TCGAGATATGAAATATGGCCGGAAGA-CCATGAACTCGTGAACGAA-TGAT-GATTTTGGTGGAGGGTCCGTCCTGAAGCCAA-TGCCCC-TGCCTC--TTGAGTCGAAAGCGAGCCATAGGCATGGC---ACGGCGCATGTGTGGGTGGGGGGTGCTAACAAAACCCGATGCAGCACGCGTCAAGGAACTAGTACGTGAATGAGG-CCCACTGTCATT-GGTTGATTAGTGGTCC---TATGTTTCGTAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACGCTCGTGGGTCGAAAGTTTGGCACGGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGCACGGTAGGTTGAAGCGTGTGGGAT--GCCAATGGAGACGGACACGACGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCATCCTCTAAAGGCTCGGGAG-------CCCCTT-GTGACACCCAGTAGGGCTGCGC---TGCAA------ Paris_verticillata TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGAT-GATTTTGGTGGAGGGTCCGTCCTGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCATGGC---ACGGCGCATGTGTGGGTGGGGG-CGCTAACAAAACCCGACGCAACACGCGTCAAGGAACGAGTACGTGAATGAGG-CCCACCGTCATT-GGTTGATGAGTGGTCC---TATGTTTCGTAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACGCCCGTGGGTCAAAAGTGTGGCACGGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCAACGGAGACGGACACGACGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGGGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGC---TGCAA------ Trillium_camschatcense TCGAGATACGAAATGTGGTCGGAAGA-CTGTGAACTCGTGAACGAAATAATCGATTTTGGTGGAGGGTTCGTCCCGAAGCCAA-TGCCTC-TGCCCC--TTGAGTCGAAAGCGGGCCATAGGCGTGGCGCGACG-CAAGTAT--GGGTAAGGGGCGCTAACAAAACCCGGCGCAGCACGCGTCAAGGAACGAGTACGTGAA-GCGG-CCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCTCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCTGAGGGCACGCCTGCTTGGGCGTCACGCCTTGCGTCGCTCGGTGCCAATTGCGCTCGTGGGTCGAAAGGTTGGCACGGATGCGGAGATTGGCCTCCCGTGCCCCTTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGGG-------CCCTT-GGGACACCCAGTAGGGTTGCGC---TGAAC------ Trillium_chloropetalum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_decipiens TCGAGATATGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGCCGAAATCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGTTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCGGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTCGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCCC-TGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GTCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTGAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_discolor TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAATCGAGCCATAGG{CT}GTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCGGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTCGAAAGGATGGCACGGATGCGGAGACTGACCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--TGGAT--GTCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTGAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_erectum TCGAGATACGAAATGTGGTGGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTCGTCTCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTTGAAAGCGGGCCATAGGCGTGGCGCGACG-CACGTGT--GGGTGGGGG-CGCTAACAAAACCCGGCGCAGCACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGATCAGTGGTCC---TATGTTTCTCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCTGAGGGCACGCCTGCTTGGGCGTCACGCCTTGCGTCGCTCGGTGCCAACTGCGCTCGTGGTTCGAAAGTTTGGCACGGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGGG-------CCCTT-GTGACACCCAGTATGGTTGCGC---TGAAC------ Trillium_govanianum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TG-TCGATTCCGGTGGAGGGTTCGTCCCGAAGCCAA-TGCCCC-TTCCCC--TTGAGTCGAAAGCGGGCCATAGGCGTGGCGCGGCG-CAGGTGT--GGGTGGGGG-CGCTAACAAAACCCGGCGCAGCACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGATGAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTCGAAAGTGTGGCACGGATGCGGAGACTGGCCTCCCGTGCCC-TTGG----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCAACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_grandiflorum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGACCGATTTCGGTGGAGGGTTCGTCCCGAAGCTAA-TGCCCC-TGTCCC--TTGTGTCGAAAGCGGGCCATAGGCGTGGCGCGACG-CACGTGT--GGGTGGGGG-CGCCAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGATCAGTGGGCT---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTACGCCCGTGGGTCGAAATTTTGGCACGGATGCGGAGACTGACCCCCCGAGCCC-TTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGGCGGACACGGCGAGTGGTGGATGAGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGGA-------CCCTT-GTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_lancifolium TCGAGATACGAAAT{AG}TGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GG{AC}TGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_maculatum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGC{AG}CGGCG-CA{CG}GTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTT{AG}CGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_ovatum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGACCGATTCTGGTGGAGGGTTCATCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAATCGAAAGTGGGCCATAGGTGTGGCGCGGTG-CATGTGT--GGGTGGGGG-CGCTAACAAAACTCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATTTGGTTGAGCATTGGTCC---TATGTTTTGCATAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCACATGTGGGTCGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGACGGACGCGGCGAGTGGTGGATGCGAGCCGGATGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGT---TGCAC------ Trillium_petiolatum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTA{GT}TCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_pusillum TCGAGATACGAAATGTGGCCGGAAGA-CCGTGAACTCGTGAATGAA-TGACCGATTCTGGTGGAGGGTTCGTCCTGAAGCCAAATGCCCCCTGCCCC--TTGGGTCGTAAGCGGGCCATAGGCGTGGCGCGACG-CACGTGT--GGGTGGGGG-CACTAACAAAACTCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGTGCAGTGGTCC---TATATTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGCCTTGCGTCGCTCGGTGCCAACTACGCCCATGGGTCGAAATGTTGGCACGGATGCGGAGACTGGCCCCCCGTACCC-TTAT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATATGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGCGC-TGAAC------ Trillium_recurvatum TCGAGATACGAAAT{AG}TGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_reliquum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAATCGAGCCATAGGCGTGGCGCGGCG-CACGTGT--GGACGGGGG-CGCTAACAAAACCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCGGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTCGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCCC-TGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GTCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTGAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_rivale TCGAGATGCGAAATATGACCGGAAGA-CTGTGAACTCGTTAACGAA-TG-TCGATTCTGGTGGAGGGTTCGTCCTGAAGCCAA-TGCCCC-TGCCCC--TTGAGCCGAAAGCGGGCCATGGGCATCGTGCGGTG-CATGTGT--TGGTGGGG--CGCTAACAAAATTCGACGCAGCATGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACCGTCATT-GCCTGACACGTGGTGGTGGTATGTTTCGCAGAGTAATTTTATGACTCCCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGACAGAGGGCACGTCTGCCTGGGCGTCACGTCCTGCGTCGCTCAGTGCCAATTGCGCTCGTGG-----AAGTGTTGCATGGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGCG--GTGGGTTGAAGAGT--GGGAT--GCCAGCGGAGACGGACATGGCGAGTGGTGGATACGAGCCGGACGTCGTGGTCTTCTCCTCTAATGGCTCGGAGATAACT---CCC-AAGAA----------GGGTTGCGC---TGCAC------ Trillium_rugelii TCGAGATACGAAATGTGGTGGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTCGTCTCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTTGAAAGCGGGCCATAGGCGTGGCGCGACG-CACGTGT--GGGTGGGGG-CGCTAACAAAACCCGGCGCAGCACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGATCAGTGGTCC---TATGTTTCTCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCTGAGGGCACGCCTGCTTGGGCGTCACGCCTTGCGTCGCTCGGTGCCAACTGCGCTCGTGGTTCGAAAGTTTGGCACGGATGCGGAGATTGGCCTCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGAGT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGGG-------CCCTT-GTGACACCCAGTATGGTTGCGC---TGAAC------ Trillium_sessile TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGATCGATTCTGGTGGAGGGTTTGTCCCGAAGCCAA-TGCCCC-TGCCCC--TTGAGTCGAAAGCGAGCCATAGGCGTGGCGCGGCG-CAGGTGT--GGACGGGGG-CGCTAACAAATCCCGGCGCAACACGCGTCAAGGAACGAGTACGTGAATGCGGGCCCACTGTCATT-GGCTGAGCAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTGGAAAGGTTGGCACGGATGCGGAGACTGGCCCCCTGTGCCC-TTGT----GCGCGCGGTGGGTTGAAGATT--GGGAT--GCCGACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGTCCTCTAAAGGCTCGGAGG--------CCCTTTGTGACACCCAGTAGGGTTGCGC---TGCAC------ Trillium_undulatum TCGAGATACGAAATGTGGCCGGAAGA-CTGTGAACTCGTGAACGAA-TGA-CGATTCCGGTGGAGGGTTCATCCTGAAGCCAA-CGCCCC-TGCCCC--TTGAGTCGAAAGCGGGCCATAGGCGTGGCGCGGCG-CAGGTGT--GGGCGGGGG-CGCTAACAAAACCCGGCGCAGCACGCGTCAAGGAACGAGTACGTGAATGCGG-CCCACTGTCATT-GGCTGATGAGTGGTCC---TATGTTTCGCAGAGTAATTTTATGACTCTCGGCAACGGATATCTTGGCTCCCGTATCGATGAAGAACGTAGCGAAATGCGATACTTGATGTGAATTGCAGAATCCCGTGAATCATCGAGTTTTTGAACGCAAGTTGCGCCCGATGCCATTCGGCAGAGGGCACGCCTGCCTGGGCGTCACGTCTTGCGTCGCTCGGTGCCAACTGCGCCCGTGGGTCGAAAGTGTGGCACGGATGCGGAGACTGGCCTCCTGTGCCC-TTGG----GCGCGCGGTGGGTTGAAGAGT--GGGCT--GCCAACGGAGACGGACACGGCGAGTGGTGGATGCGAGCCGGACGTCGTGGTCTCGCCCTCTAAAGGCTCGGAGG-------CCCCTT-GTGACACCCAGTAGGGTTGCGC---TGCAC------ Veratrum_mackii CTGAGACCCCCAACATTAACGTATGACTTGCGAACTTGTGAATGA--TAGT-GACAACTTGCGCCATCGTGTTGATGTTGTTGCGGATGGTTCGTGACCGTGTCAACATGTTGGTGTGGGTTGGAACACCAACGAACTCCGGCACAGTCGTGTGTCAAGGACGAAATAATTACCGAAAATGACAATGCCCTTTCCTCGAG---------------CATTGCTTTCGAGATTTGGTCCATCGTCATGTTGTGAAGAATTGGATGACTCTCGACAACGGATATCTGGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAACCCCGCGAACCATCGAGTCTTTGAACGCAAGTTGTGCCTGATGCCATTTGGTGGAGGGCACATCTGCCTGTGTGTCACGTTTCGTGTTTGCTCCTCGCCTCTTGTGCCCAGCTCTATTGCGATGTGAGAGGCGTTGGATGCAAAGTTTGGCTCCTCGTGCCCTTGTGCGCGTTGGGCTGAAGATTGGGTTGTCGGCACTGAAGAGCATAGCTAATGGTTGATGCTTTGTTGCAGAAATGGTTACTGTTGTGCTCTCATTGCCCACGCATTTGTTGACCCTT---GAGACCCAAATT-GCGATCGTCTTGCCT--TGCT ; END; [ The following blocks are output data for analysis step 1612 ] BEGIN TREES; TITLE Tb6388; LINK TAXA = TaxaForAnalysisStep1612; TREE Fig._1b = [&R] (Veratrum_mackii,(((((Daiswa_fargesii,Daiswa_polyphylla,Daiswa_thibetica,Daiswa_violacea)Daiswa,Kinugasa_japonica),((Paris_incompleta,Paris_tetraphylla),Paris_verticillata)Paris)Paris_s.l.,((Trillium_camschatcense,(Trillium_erectum,Trillium_rugelii))Erectum_Group,((((Trillium_chloropetalum,Trillium_lancifolium,Trillium_maculatum,Trillium_petiolatum,Trillium_recurvatum,Trillium_sessile),(Trillium_decipiens,Trillium_discolor,Trillium_reliquum))Trillium_subg._Phyllantherum,((Trillium_grandiflorum,Trillium_pusillum),Trillium_ovatum)Grandiflorum_Group),(Trillium_govanianum,Trillium_undulatum)))Trillium_plus_Trillidium),Trillium_rivale)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr866] END;