#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 11, 2026; 19:32 GMT TreeBASE (cc) 1994-2008 Study reference: Crous P.W., Wingfield M.J., Guarro J., Hernández-restrepo M., Sutton D., Acharya K., Barber P., Boekhout T., Dimitrov R.A., Duenas M., Dutta A.K., Gene J., Gouliamova D., Groenewald M., Lombard L., Morozova O., Sarkar J., Smith M., Stchigel A.M., Wiederhold N.P., Alexandrova A.V., Antelmi I., Armengol J., Barnes I., Cano-lira J.F., Castaneda ruiz R.F., Contu M., Courtecuisse R., Silveira A.L., Decock C., Goes A.D., Edathodu J., Ercole E., Firmino A., Fourie A., Fournier J., Furtado E., Geering A.D., Gershenzon J., Giraldo A., Gramaje D., Hammerbacher A., He X., Haryadi D., Khemmuk W., Kovalenko A.E., Krawczynski R., Laich F., Lechat C., Lopes U.P., Madrid H.R., Malysheva E., Marin-felix Y., Martin M.P., Mostert L., Nigro F., Pereira O.L., Picillo B., Pinho D.B., Popov E.S., Rodas C., Latham S., Sandoval-denis M., Shivas R.G., Silva V., Stoilova-disheva M.M., Telleria M., Ullah C., Unsicker S.B., Van der merwe N.A., Vizzini A., Wagner H., Wong P.T., Wood A., & Groenewald J.Z. 2015. Fungal Planet description sheets: 320-370. Persoonia , 34: 167-266. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S17580] [ The following blocks are input data for analysis step 16402 ] BEGIN TAXA; TITLE TaxaForAnalysisStep16402; DIMENSIONS NTAX=9; TAXLABELS Anthostomella_proteae_EU552101 Diaporthe_oxe_KC343165 Emarcea_castanopsidicola_AY603496 Emarcea_eucalyptigena_CPC_24914 Xylaria_grammica_AB625414 Xylaria_ianthinovelutina_JQ936302 Xylaria_juruensis_GU322439 Xylaria_laevis_GU324747 Xylaria_polymorpha_AB274817 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32159] TITLE ITS_alignment_of_Fungal_Planet_338_Emarcea_eucalyptigena; LINK TAXA = TaxaForAnalysisStep16402; DIMENSIONS NCHAR=712; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Anthostomella_proteae_EU552101 GACACCCCAGGGCCGGAAAGCTATCCAAACTCGGTCATTTAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTATAGAG-------TTATCACAACTCCCAACCCTATGTGAAC--ATACCTCTCGTTG-CCTCGGCGGTTGCGAGTTACCCGTGCCATATACTGCACCGGTACTGCCTACCCGGCAGTGCAGGGCACCGCAGTCCGGGTAGCCCGCCCCCGCCGGCGGCCCACGAAACTCTGTTTTACGTG-----AATCTCTGAATC-ATAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAG-CCCTGTTGCTTAGCGTTGGGAGCCTACGGCCTAGCCTGTAGCTCCTCAAAGTTAGTGGCGGAGTTGGTTCTCACTCTAGGCGTAGTAA-TTCTATCTCGCTTCTG--CAGTGGTTCCGGCCCCCGCCGTAAAACCCC-TAATTT-TATACTGG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAAAGAAACCAACAGGGATTG Diaporthe_oxe_KC343165 ----------------------------------------------------------AACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTGCTGGAACGCGCTTCGGCGCACCCAGAAACCCTTTGTGAACTTATACCTATTGTTG-CCTCGGC-----------------GTCAGGC---------------CGGCCTCTTCACTGAGGCCCCCCGGAGAC---GGGGAGC-AGCCCGCCGGCGGCCAAGTTAACTCTTGTTTTTACACTGAAACTCTGAGAAAA-AAAACATAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTTCGAGCGTCATTTCAACCCTCAAGCC----TGGCTTGGTGATGGGGCACTGCCTGTAAAAGGGCAGGCCCTGAAATCTAGTGGC-GAGCTCGCCAGGACCCCGAGCGTAGTAG-TTATATCTCGCTTTGGAAGGCCCTGGTGGTGCCCTGCCGTTAAACCCCCAACTTCTGAAAA---TTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATA----------------------------------- Emarcea_castanopsidicola_AY603496 --------------------------------------------GAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTATAGAG-------TTATTACAACTCCCAACCCTATGTGAAC--ATACCTATCGTTG-CCTCGGCGGCGCGGT-CCGGCCCTGCCACCC--------CGAAGTGCTTACCCTGTAG-GCGCTACCCGGTGGTCAGGGTAGGCC-CGCCCGCCGGCGGCCCACGAAACTCTGTTTTAGCAG-----TTCTTCTGAATC-GTAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCCTCAAGCCCTGTTGCTTGGTGCTGGGAGCCTACAGCCC-CGCTGTAGCTCCTCAAAGTTAGTGGCGGAGTCGGTACATACTCTAGGCGTAGTAA-TTCTATCTCGTCTCTG--TGGTTGTGCTGTCCCCTGCCGTAAAACCCC--AACTT-TATA--GGTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGAAG------------------ Emarcea_eucalyptigena_CPC_24914 ---------------------------------------------------------------------CGTTGGTGAACCAGCGGAGGGATCATTATAGAG-------TTATTACAACTCCCAACCCTATGTGAAC--ATACCTATCGTTG-CCTCGGCGGCGCGGT-CCGGCCCTGCCACCC--------CGAAGCGCTTACCCTGTAG-GCGCTACCCGGTGGTTAGGGTAGGCC-CGCCCGCCGGCGGCCCACGAAACTCTGTTTTAGCAG-----TTCTTCTGAATC-GTAAACTTAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCCTCAAGCCCTGTTGCTTGGTGCTGGGAGCCTACAGCCC-CGCTGTAGCTCCTCAAAGTTAGTGGCGGAGTCAGTACACACTCTAGGCGTAGTAA-TTCTATCTCGCCTCTG--CGGTTGTGCTGTCCCCTGCCGTAAAACCCC--AACTT-TATA--GGTTTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATA----------------------------- Xylaria_grammica_AB625414 -----------------------------------------------------------------TCTCCGTTGGTGAACCAGCGGAGGGATCATTAAAGAG-------TTATTACAACTCCCAAACCCATGTGAAC--TTACCTTTTGTTG-CCTCGGCAGGTCGCGACCTACCCTGTGAGAC---------------CCTACCCTGTAGGGTCCTACCCGGTAGTC---GCGGGTA-CGCCTGCCGGTGGCCCATGAAACTCTGTTTATTACT----GTTATTCTGAATC-TATAACTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAGCCCCTGTTGCTTAGCGTTGGGAGCCTACAGCC--TTCTGTAGCTCCCCAAAGTTAGTGGCGGAGTCGGTTTACACTCTAGACGTAGTAAATTTTATCTCGTCTGC---AGTTAAGCCGGTCCCTCGCCGTAAAACCCCCCAATTTTTA-AA-GG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAA---------------------------------------- Xylaria_ianthinovelutina_JQ936302 ---------------------------------------TAGAGGAAGTAAAAGTCGTAACAAGGTCTCCGTTGGTGAACCAGCGGAGGGATCATTAAAGAG--------TGTAATAACTCCCAAACCCATGTGAAC--ATACCTTACGTTG-CCTCGGCAGGTCGCG-CCTACCCCGTAGAGA---------------CTTACCCTGTAGGGCTCTACCCGGTGGAC---GCGGGTA-AGCCTGCCGGCGGCCCACGAAACTCTGTTTAGCATT----GTACTTCTGAACAATATAACTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAG-CCCTGTTGCTTAGCGTTGGGAGCCTGCTGT------TGCAGCTCCTCAAAGTTAGTGGCGGAGTCGGTACACACTCTAGACGTAGTAATTTTTATCTCGCCTATA--GGTTGTGCCGGTCCCCTGCCGTTAAACCCCCCAATTTTTA-AA-GG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATA-GCGG------------------------ Xylaria_juruensis_GU322439 -------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTAAAGAG--------TGTAATAACTCCCAAACCCATGTGAAC--ATACCTTACGTTG-CCTCGGCAGGTCGCG-CCTACCCCGAAGGTC---------------CCTACCCTGTAGGGACCTACCCGGTGGGC---GCGGGTA-AGCCTGCCGGCGGCCCACGAAACTCTGTTTAGCATT----ATACTTCTGAATTATATAACTAAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAGCCCCTGTTGCTTAGCGTTGGGAGCCTACTCT----CCTGTAGCTCCTCAAAGTTAGTGGCGGAGTCGGTACACACTCTAGACGTAGTAGTTTTCATCTCGCCTATA--GGTTGTGCCGGTCCCCTGCCGTTAAACCCCCCAATTTTTA-AA-GG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-------------------- Xylaria_laevis_GU324747 -------------------------------------------------------------------TCCGTAGGTGAACCTGCGGAGGGATCATTAAAGAG--------TTCTATAACTCCCAAACCCATGTGAAC--ATACCTTACGTTG-CCTCGGCAGGTCGCG-CCTACCCCGTAGCCT---------------CCTACCCTGTAG-GACCTACCCGGTAGAC---GCGGGTA-AGCCTGCCGGCGGCCCAAGAAACTCTGTTTAGTATT-----GAATTCTGAACC-TATAACTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAGCCTCTGTTGCTTAGTGTTGGGAGCCTACGGC---ACCCGTAGCTCCTCAAAGTTAGTGGCGGAGTCGGTTCACACTCTAGACGTAGTAA-TTTTATCTCGCCTATC--AGTTGGACCGGTCCCCTGCCGTAAAACACACCAATTTCTA-AA-GG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAGCATATCAATAAGCGGAGGA-------------------- Xylaria_polymorpha_AB274817 -----------------------------------------------------------------TCTCCGTTGGTGAACCAGCGGAGGGATCATTAAAGAG--------TTCTATAACTCCCAAACCCATGTGAAC--ATACCTTACGTTGCCCTCGGCAGGTCGCG--CTATCCCGTAGCGT---------------CCTACCCTGTAG-GACCTACCCGGTAGAC---GCGGGTA-AGCCTGCCGGCGGCCCACAAAACTCTGTTTAATATT-----GAATTCTGAACC-TATAACTAAATAAGTTAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCATTAGTATTCTAGTGGGCATGCCTGTTCGAGCGTCATTTCAACCCTTAAGCCTCTGTTGCTTAGTGTTGGGAGCCTACGGC---ACCCGTAGCTCCTCAAAGTTAGTGGCGGAGTCGGTTCACACTCTAGACGTAGTAATTTTTATCTCGCCTATC--AGTTGGACCGGTCCCCTGCCGTAAAACCCCCC-ATTTTTA-AA-GG-TTGACCTCGGATCAGGTAGGAATACCCGCTGAACTTAAG--------------------------------------- ; END; BEGIN SETS; CHARSET ITS (CHARACTERS = ITS_alignment_of_Fungal_Planet_338_Emarcea_eucalyptigena) = 70-672; END; [ The following blocks are output data for analysis step 16402 ] BEGIN TREES; TITLE Single_most_parsimonious_for_Fungal_Planet_338_Emarcea_eucalyptigena; LINK TAXA = TaxaForAnalysisStep16402; TREE Fungal_Planet_338_Emarcea_eucalyptigena = [&R] ((((Emarcea_eucalyptigena_CPC_24914:51.0,Emarcea_castanopsidicola_AY603496:50.0):41.0,Anthostomella_proteae_EU552101:82.0):111.0,(((Xylaria_ianthinovelutina_JQ936302:10.0,Xylaria_juruensis_GU322439:12.0):12.0,(Xylaria_laevis_GU324747:8.0,Xylaria_polymorpha_AB274817:6.0):13.0):12.0,Xylaria_grammica_AB625414:23.0):164.0):0.0,Diaporthe_oxe_KC343165:0.0); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr88881] END;