#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 17, 2025; 19:41 GMT TreeBASE (cc) 1994-2008 Study reference: Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015. Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity. BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18113] [ The following blocks are input data for analysis step 16675 ] BEGIN TAXA; TITLE TaxaForAnalysisStep16675; DIMENSIONS NTAX=23; TAXLABELS 'Caldanaerobacter subterraneus pacificus_WP_009610668' 'Caldanaerobacter subterraneus tengcongensis_NP_623304.1' 'Caldanaerobacter subterraneus yonseiensis_ERM92236.1' 'Carboxydothermus hydrogenoformans WP_011343033.1' Carboxydothermus_pertinax_BAN17001 Desulfobacterium_CBX30159.1 'Desulfotomaculum acetoxidans YP_003191763.1' 'Desulfotomaculum kuznetsovii YP_004518100.1' 'Geobacillus sp. YP_003989188.1' Geobacillus_thermoglucosidasius_EID44395.1 'Geobacillus thermoglucosidasius YP_004587920.1' 'Methanosaeta harundinacea YP_005920613.1' 'Methanosaeta thermophila YP_843756.1' 'Methanosarcina acetivorans NP_618172.1' 'Methanosarcina barkeri YP_306974.1' 'Methanosarcina mazei NP_632145.1' 'Methanosarcina mazei YP_007488856.1' 'Moorella thermoacetica YP_430060.1' 'Rhodospirillum rubrum YP_426515.1' 'Thermacetogenium phaeum YP_006919310.1' 'Thermoanaerobacter sp. YS13 THYS13_RS04700' 'Thermococcus onnurineus TON_1018' 'Thermodesulfobacterium thermophilum WP_022856204.1' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32838] TITLE CooS_alignment; LINK TAXA = TaxaForAnalysisStep16675; DIMENSIONS NCHAR=679; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Caldanaerobacter subterraneus pacificus_WP_009610668' ----------------------MKNVHSIDPAVTKMLEIARKQGMETAWDRYLAQKPQCGFGELGICCRNCNMGPCRIDPFGEGPQKGVCGATADTIVARNLLRMIAAGASAHSDHGRDVVETLRGVGTGEAKDYTIKDEKKLMTLCKEFNITTEDKSIHEIAQELGEAALEEFGTQ--KGYIQTI-ERVPLQRKEIWKNLGIIPRGIDREIVESLHRTHMGVDHDPASLILHGLRCSLSDGWGGSMLATEFSDVLFGTPRPIRGQCNLGVIREDAVNIVVHGHEPVLSEMLVEAVQDPELEALAKKNGAS-GINLVGMCCTGNEILMRHGIPSAGNFLHQELAVMTGAIEAMVVDVQCIMPSLAQLASCYHTKFISTSPKAKFPGALHIQFEEHHALDVAREIVRQAIENYPHRN--KSRVFIPKETAEYVGGFSVEAILEALG-----GTWTPLIEAIKSKKIRGIAALVGCNNPKVTHDYNHVNMTKALIAQDVLVVETGCAAIASAKAGLLLPE-TAQLAGSGLASVCRTLG--------IPPVLHMGSCVDISRILVMAAAIAKELGVDIADLPIAGAAPEWMSEKAVSIGAYVVASGIFTVLGTVPPVLGSKTVTEILTQKAKYLVGGYFAVEPDPFKAAELIINHIDEKRAALGI----------------- 'Caldanaerobacter subterraneus tengcongensis_NP_623304.1' --------------------MTKQCKVSLDPAVCEMVEKARRVKVETVWDRYQAMLPQCGFGETGLCCRHCLQGPCRIDPFGGEPKLGICGATADVIVARGLDRAIAAGAASHSGHARHLAHTLKLAAKGKARDYTIKDKAKLRSVAARLGIPTEGRSIAEIALDVAEAALADFHEK--DTPVMWAATTVTKKRARLFEEKGLLPKGIDYEVSDIMHRTSYGVDADPVNLLLGGLRCGLAD-LAGCYMGTDMADILFGTPQPVVTEANMGVLKADAVNVAVHGHNPVLSEVIVAVAK--EMEAEAKAAGAS-GINVVGICCTGNEVLMRHGIPACTHSVSQEMALVTGALDAMVVDYQCIMPSLATVAECMGTKLITTMEIAKIPGAIHIEFSEEKAGEKAREILRLAIETFTRRR--GKPVDIPPYKTKVVAGFSVEAIVKALSKLNAEDPLKPLIDQIAAGNIRGVCLFAGCNNVKVPQDQNFTAIARRLLKENVLVLATGCGAGALMRHGFMDPANVGELCGEGLKAVLTAIGEANGLGGPLPPVLHVGSCVDNSRAVALAVAVADRLGVDTDQLPVVASAAEAVAEKAVSIGTYAVALGLPTHVGVMLPVLGGPLVTKVLTDKVKELTGGYFIVDLDPESAAEKLLAAIDERRAALGLSVPGGGRR--------- 'Caldanaerobacter subterraneus yonseiensis_ERM92236.1' --------------------MAKLSKTSLDPAVVEMVEKAKSMEIKTVWDRYQAMVPQCGFGETGLCCRHCLMGPCRIEPFGGEPKRGICGATADVIVARGLDRAIAAGAAAHSGHARHLAHTLKMVAKKEARDYSIKDKNKLYKVAESLGISTEGKSEDKIALAVADAALSDFNEKPTEAPTAWVAKTVTEKRRNLLTEQGLMPKGIDYEISDIMHRTHMGCDADPINLLQAGIRAGLAD-LAGCTMGTEISDILFGTPQPVVSEANLGVLKADAVNVAVHGHNPVLSEIIVEVAE--DMKGEAQAVGAK-GVNVVGICCTGNEVLMRHGIPSCTHSLSQEMALITGALDAVVMDYQCIYPSLATVAECMGTKLITTMETMKLPGAIHIPFEEKRAKDIAREIIRQAIQAFTQRR--GKPVDIPQVKHRVVAGFSVEAIVNALSKLNAEDPLKPLIDNIVSGNLRGVCLFCGCNNVKVPQDRNFTIMVRRMLKENVLVIASGCGAGALMRHGFMDPSRTKEVCGEGLKAVLTAIGEANGLGEPLPPVLHIGSCVDTSRAVALATALGNRLGVDIDQLPVVASAPEAMAEKAVAIGTWAVAIGIPTHVGVPLPVVGGPLVTRVLTDRVKELTGGYFIVELDPEAAAQKLLTVIDERRAALGLSVPGGGRR--------- 'Carboxydothermus hydrogenoformans WP_011343033.1' --------------------MAKQNLKSTDRAVQQMLDKAKREGIQTVWDRYEAMKPQCGFGETGLCCRHCLQGPCRINPFGDEPKVGICGATAEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAVQGKAASYMIKDRTKLHSIAKRLGIPTEGQKDEDIALEVAKAALADFHEK--DTPVLWVTTVLPPSRVKVLSAHGLIPAGIDHEIAEIMHRTSMGCDADAQNLLLGGLRCSLAD-LAGCYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVSVSK--EMENEARAAGAT-GINVVGICCTGNEVLMRHGIPACTHSVSQEMAMITGALDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHVNFAEEAAVENAKQILRLAIDTFKRRK--GKPVEIPNIKTKVVAGFSTEAIINALSKLNANDPLKPLIDNVVNGNIRGVCLFAGCNNVKVPQDQNFTTIARKLLKQNVLVVATGCGAGALMRHGFMDPANVDELCGDGLKAVLTAIGEANGLGGPLPPVLHMGSCVDNSRAVALVAALANRLGVDLDRLPVVASAAEAMHEKAVAIGTWAVTIGLPTHIGVLPPITGSLPVTQILTSSVKDITGGYFIVELDPETAADKLLAAINERRAGLGLPW--------------- Carboxydothermus_pertinax_BAN17001 --------------------MTKQNLKTTDRAVQQMLDKAEREGIQTVWDRYEAMKPQCGFGETGLCCRHCLQGPCRINPFGDEPKVGICGATAEVIVARGLDRSIAAGAAGHSGHAKHLAHTLKKAVQGKAASYMIKDRAKLHSIAKRLGIPTEGQKDEDIALKVANAALADFHEK--DTPVLWTTTTLPPSRVKVLSDHGLIPAGIDHEIAEVMHRTSMGCDADAQNLLLGGLRCSLAD-LAGSYMGTDLADILFGTPAPVVTESNLGVLKADAVNVAVHGHNPVLSDIIVTVSK--EMEKEARAAGAT-GINVVGICCTGNEVLMRHGIPACTHSVSQEMAMVTGALDAMILDYQCIQPSVATIAECTGTTVITTMEMSKITGATHVNFAEETAVENAKQILRLAIDTFKRRK--GKPVEIPNIKTKVVAGFSTEAIINALSKLDANDPLKPLIDNVVNGNIRGVCLFAGCNNVKVPQDQNFITIARKLLKENVLVVATGCGAGALMRHGFMDPANVEELCGNGLKAVLTAIGEANGLGGPLPPVLHMGSCVDNSRAVALVAALANRLSVDMDRLPVVASAPEAMHEKAVAIGTWAVTIGLPTHIGVIPPVTGSLPVTQILTNSVKEITGGYFIVELDPEAAANKLLAAINERRAGLGLPC--------------- Desulfobacterium_CBX30159.1 ---------MFSRRNNNMPRKELSSDKSTDPAVLQMLAKAGKNNITTVWDRYEAMKPQCGFGDTGLCCRHCLQGPCRIDPFGEGPKEGICGASADVMVARGLDRAIAAGTAAHSGHARHLAHTLLKTANGQAKDYSIKEAEKLKSVAARLGIAVNDRSDNDIAKDVAKAALADFHEK--DTPVLWAATVVTPARAKLLGDLGLVPKGIDHEISEIMHRTLYGVDADPVNLLLAGLRCAVAD-LASCYMGTDLADILFGIPQPKTSTANMGVLKADAVNIAMHGHNPVLSDVIVSLAE--KANAKAVEAGAS-GINIVGICCTGSEIMMRHGIPSCTHSVSQEMAIVTGALDAMVVDYQCIMPSVVSVAECFATPVITTMDLCKITNAVHIEFNEEMAAEKADEIFDIAIKSFKRRK--NRTVDIPDIKSNVIAGFSVEAIVGALSKLNETDPLKPLVDNIKSGNIRGVCLFAGCNNVKVAQDKNFTIIARILLKNNVLVIATGCGAGALMRHGFTDPSNVDDLCGDGLKAVLTAIGEANGLGGPLPPVLHLGSCVDNSRAVALAVAVANYLGVDTDRLPVVASAAEAVSEKAVSIGAYAVAAGLPTHVGVMLPVTGSALVTQILTEKIKDVTGGYFIVDLDPESAAQKLLAAIDERRAGLGL----------------- 'Desulfotomaculum acetoxidans YP_003191763.1' -----------------------MSEKSIDQATLKMLSKAKADNVSLAWDRLAAQEPQCGFGQLGVCCRNCNMGPCRVDPFGDGPSEGVCGATADTIVARNLVRAIAAGAASHSDHGRGIASTLYASAKGHAPDYPVKDEVKLKALAKEFGIAVEDRTSQEIALEVAETVLDEFGTR--KGSLQFV-NRVPLKRKEIWDKLGITPRGIDREVVECMHRTHIGVDNDYVSLILQGMRTALSDGWGGSIVATEISDILFGTPQPIKGSCNLGVLQADQVNIILHGHEPTLSDILVHAARAPELLAAAKEKGAS-GINVCGMCCTGNEILMRHGVPLAGNFLQQELAIVTGAVEAMVVDIQCIMPSLPQVAACYHTKVISTSPKAKFPGAEHIPFDEHNAMEVAEKIVLAAVENFSNRR--PERVNIPSDRMDYMAGFSVEAILSALG-----GSLDPLLNAIKSGAIKGIVGVVGCNNPKYKHDQSHINFVNELIKNNVLVVATGCAAIACGKYGLLLPE-AAKNAGDGLRAVCEALK--------IPPVLHMGSCVDISRIMTVAAAIANALGVDISDLPLAGAAPEWMSEKAVSIGTYVVSSGIFTILGTVPPVLGSKNVAELLTSGAEGVVGAVFAVEEDPVAAADLAVKHIEKKRLALGLEP--------------- 'Desulfotomaculum kuznetsovii YP_004518100.1' ----------------------MKGTSSIDPASLQMLKVARDGGLETAWDRYLAQQPQCGFGELGLCCRNCNMGPCRIDPFGDGPQKGVCGATGDIIVARNLLRMIAAGAAAHSDHGRDIIETLRGVAAGEIKDYTIKDENKLKALAREFGISTEGETVQAIAEKLAEAALEEFGTR--KGYLQAI-DRVPSKRKEIWEKLGIMPRGIDREVVEAMHRTHFGVDNDPANLILHGLRCSLSDGWGGSLLATEFSDVLFGTPRPVRGRSNLGVLSKEAVNILVHGHEPILSEMLVAAAKDPGLISAARAKGAS-GINLAGMCCTGNEILMRHGVPVAGNFLQQELAVITGALEAVVVDVQCIMPALGQLAACYHTKFISTSPKAKFPGAIHIPFNEHNALETAREIIRQAIENYPNRD--KNRVFIPEETTAYVAGFSVEAILSALG-----GTLTPLIEAVKNKKIRGIAALVGCNNPKVTQDYNHVNMAKALIARDVLVVETGCAAIASAKAGLLLPE-AAELAGAGLAEVCRALG--------LPPVLHMGSCVDISRILTVAAALARELGVDIADLPVAGAAPEWMSEKAVSIGAYVVASGIFTVLGTVPPVLGSNVVADLLTRQAKDLVGGYFAVETDPFKAAELIIAHIDAKRAALGI----------------- 'Geobacillus sp. YP_003989188.1' --------------------MGKTCNFSLDPAVCEMIEKAKQMGVETIWDRYQVMLPQCGFGETGLCCRHCLQGPCRIDPFGGEPKVGICGATADVIVARGLDRAIASGAAGHSGHARHLAHTLKKTAEGKAPDYAIKDRDKLRKVAERQGIPTENRSDAEIALDLAKAALSDFNEK---EAVSWVVHTVTENRAKVLSEQNLMPKGIDYEIADIMHRTHYGADAEPMNLIWAGLRCAMAD-MAGSYIGTDISDILFGTPQPVVTEANLGVLKADAVNLAVHGHNPVLSDVIVHVAR--EMEEEAKAAGAT-GVNVVGICCTGNEVMMRHGIPACTYSVSQEMALITGAVDAVVIDYQCIVPALATVAECMGTKIITTTDVTRMPGAIHVNFTEETAVENAKEIIRIAIENFTHRK--GKPVDIPKHKSKVVAGFSVEAIKNALAKLNAEDPLKPLIDHIAAGNIRGVCLFVGCNNVKITQDQNFIAMARQLLKENVLLLATGCGAGALMRHGFMDPANVDTFCGEGLKAVLTAIGEANGLGGPLPPVLHVGSCVDCSRGVALAVELANRLGVDIDRLPLVASAAEAMAEKAVTIGHYAVTLGLPTHVGINMPVTGSPFVTQLLTNKLQDYTGGYFIVESDPDSATKKLLAAIDERRASLGLSVPGGGRR--------- Geobacillus_thermoglucosidasius_EID44395.1 --------------------MGKTCNFSLDPAVCEMIEKAKQMGVETIWDRYQVMLPQCGFGETGLCCRHCLQGPCRIDPFGGEPKVGICGATADVIVARGLDRAIASGAAGHSGHARHLAHTLKKTAEGKAPDYAIKDRDKLRKVAERQGIPTENRSDAEIALDLAKAALSDFNEK---EAVSWVVHTVTENRAKVLSEQNLMPKGIDYEIADIMHRTHYGADAEPMNLIWAGLRCAMAD-MAGSYIGTDISDILFGTPQPVVTEANLGVLKADAVNLAVHGHNPVLSDVIVHVAR--EMEEEAKAAGAT-GVNVVGICCTGNEVMMRHGIPACTYSVSQEMALITGAVDAVVIDYQCIVPALATVAECMGTKIITTTDVTRMPGAIHVNFTEETAVENAKEIIRIAIENFTHRK--GKPVDIPKHKSKVVAGFSVEAIKNALAKLNAEDPLKPLIDHIAAGNIRGVCLFVGCNNVKITQDQNFIAMARQLLKENVLLLATGCGAGALMRHGFMDPANVDTFCGEGLKAVLTAIGEANGLGGPLPPVLHVGSCVDCSRGVALAVELANRLGVDMDRLPLVASAAEAMAEKAVTIGHYAVTLGLPTHVGINMPVTGSPFVTQLLTNKLQDYTGGYFIVESDPDSATKKLLAAIDERRASLGLSVPGGGDDESERDFHSL 'Geobacillus thermoglucosidasius YP_004587920.1' --------------------MGKTCNFSLDPAVCEMIEKAKQMGVETIWDRYQVMLPQCGFGETGLCCRHCLQGPCRIDPFGGEPKVGICGATADVIVARGLDRAIASGAAGHSGHARHLAHTLKKTAEGKAPDYAIKDRDKLRKVAERQGIPTENRSDAEIALDLAKAALSDFNEK---EAVSWVVHTVTENRAKVLSEQNLMPKGIDYEIADIMHRTHYGADAEPMNLIWAGLRCAMAD-MAGSYIGTDISDILFGTPQPVVTEANLGVLKADAVNLAVHGHNPVLSDVIVHVAR--EMEEEAKAAGAT-GVNVVGICCTGNEVMMRHGIPACTYSVSQEMALITGAVDAVVIDYQCIVPALATVAECMGTKIITTTDVTRMPGAIHVNFTEETAVENAKEIIRIAIENFTHRK--GKPVDIPKHKSKVVAGFSVEAIKNALAKLNAEDPLKPLIDHIAAGNIRGVCLFVGCNNVKITQDQNFIAMARQLLKENVLLLATGCGAGALMRHGFMDPANVDTFCGEGLKAVLTAIGEANGLGGPLPPVLHVGSCVDCSRGVALAVELANRLGVDIDRLPLVASAAEAMAEKAVTIGHYAVTLGLPTHVGINMPVTGSPFVTQLLTNKLQDYTGGYFIVESDPDSATKKLLAAIDERRASLGLSVPGGGRR--------- 'Methanosaeta harundinacea YP_005920613.1' -------------------MGKNVSERSIDPATRAMLLEADRAGIETAWDRFDKQQPQCGFGILGVCCRNCNMGPCRIDPFGEGADRGVCGATADIIVARNLLRMIAAGAAAHSDHARDAVLAFKKMAEGEAEGYQIKDGAKMNALAAEYGISPEGRSPEEVALELANVLLSEFGKQ--EGPITFT-RRAPAKRQSVWEKAGIDPRGVDREIVECMHRTHIGVDNDPVHLLLHGLRTSISDGWGGSMIATDVQDVLFGTPTPVMSESNLGVLKSDEVNIIVHGHEPILSEMIVAAAEDPEMVALAIEMGAK-GISVSGICCTGNEVLMRHGIPTAGNFLQQELAVITGAVEAMVVDVQCIMPALGNLAGCYHTKFISTSPKADFPGTLRMEYHEEKALETAREIVRAAVENYPNRD--PGRVNIPREKSGCMVGFSAEAILGALG-----GTPQPLVDAIVSGSIKGVGAVVGCNNPKVQHDFGHVNLVRELIRNDVLVVTTGCNAIACAKAGLLLPE-AAKEAGPGLRPICEALG--------VPPVLHMGSCVDISRILVLAAALANHLGVDISDLPAAGAAPEWMSEKAVSIGAYVIASGVYTVLGTVPPVLGSPEVTSVLTKGVEGVVGASFAVEPDPFKAAKLMIAKIEEKREGLGLSA--------------- 'Methanosaeta thermophila YP_843756.1' -------------------MANKTATESIDPATTKMLLEARRAGLETVWDRFNKQQPQCGFGQLGICCRNCNMGPCRIDPFGDGPDKGVCGATADIIVARNLLRMIAAGAAAHADHARDAVIVFKEALEGRARSYQIRDEAKLRELAAEYNISSWGE--QGGAADLANALLSDFGRQ--EGYVTLT-RRAPEKRRKIWESLGISPRGIDREIVECMHRTHMGVDNDPLHILQHGLRTSIADGWGSSMIATEVQDILFGTPSPRRSEANLGVLKEDEVNIIVHGHEPILSEMIVEAASDPEMIKLAKSVGAN-GINVAGICCTGNEVLMRHGIPVAGNFLQQELAVITGAVEAMVVDVQCIMPSLGGLAACYHTKFISTSPKAEFPGALRMEFSEERAAEIAREIVRTAVENYPKRD--RGRVLIPRERSECMVGFSVEAILKALG-----GTPQPLIDAIVNGSIKGIAAVVGCNNPKVPHDHGHVNLVRELIRNNVLVVTTGCNAIACAKAGLLRPA-AAKEAGDGLRGVCESLG--------VPPVLHMGSCVDISRILVVAAAIANKLGVDISDLPVAGAAPEWMSEKAVSIGAYVVASGVFTVLGTVPPVLGSPVVTRILTKDLGDAVGATFAVEPDPFKASKLIIEHIESKRRALGLKV--------------- 'Methanosarcina acetivorans NP_618172.1' ---------------MGKEMKQTAFEKSIDSASQIMLQKAEDEGIETAWDRYEQQLPQCSFGQLGICCRNCNMGPCRIDPFGEGTEKGICGATADIIVARNLLRMIAAGAAAHSDHARDAVLTFKKMSEGKAGSYRIKDEAKLYSLASEYGISAEEKSREEVAVELASALLSEFGKQ--EGPILCT-KRAPESRLKLWSELGIEPRGIDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFGTPEPKKSTVNLGVLSHDKVNVIVHGHEPILSEMIVEAAEDPELLELAEEKGAT-GINVAGICCTGNETLMRHGTPIAGTFLQQELAVITGAVEAMVVDVQCIMPSLGNLTGCYHTKFISTSPKADFPGTARMEFHEEEAYATAKEIVKAAVENFPNRN--LKKVSIPEEKQECMVGFSAEAILKALG-----GSPAPLIEAIAGGAIKGIGAVVGCNNVKIQHNYGHVNLVKELIKNNVLVVTTGCNAIACAEAGLLVPE-AAALAGDGLKGVCEALG--------IPPVLHMGSCVDISRILVLASAVANSLGVDISDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTIPPVLGSQAVTALLTKGLDGVIGASFAVEPDPFKAADLMLEHIEGKRKALGLK---------------- 'Methanosarcina barkeri YP_306974.1' -------------------MKTEIYEKSIDLASQKMLQKAEKEGIETAWDRYEKQLPQCSFGQLGVCCRNCNMGPCRIDPFGEGAQKGICGATADIIVARNFLRMIAAGAAAHSDHARDAVLTFKKMSEGEAGSYGIKDEAKLLSLASEYGISSEGKNLEEVAAKLANTLLQEFGKQ--DGHLQCT-RRVPESRLKLWAELGIEPRGIDREIVECMHRTHIGVDNDAVHILLQGLRTGLSDGWGGSMIATDVQDILFGVPQPRRSTVNLGVLSRDKVNVIVHGHEPILSEMIVEATENPELLKLAEEKGAA-GINVVGICCTGNETLMRHGIPIAGNFLQQELAVITGAVEAMVVDVQCIMPSLGELTGCYHTKFISTSPKADFPNTVRMEFHEDRAYETATEIVRTAVENFPNRV--PEKVTIPEEKQECMAGFSAEAILSALG-----GSPDPLIEAIKGGAVRGIGAVVGCNNIKVKHNYGHVNLVKELIENNVLVVTTGCNAIACAEAGLLLPE-ASELAGDGLKAVCKALG--------IPPVLHMGSCVDISRILVLSAAIANRLGVDISDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTIPAVLGSQAVTSLLTGGLNDVVGASFAVEPDPFKAADLMLEHIDEKRKALGLN---------------- 'Methanosarcina mazei NP_632145.1' ---------------MGCKMKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGPCRIDPFGEGAEKGICGATADIIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSYGIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFGKQ--EGPIQYT-RRAPEARLRLWTSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFGTPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAA-GINVAGICCTGNETLMRHGTPIAGNFLQQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTSPKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRN--IEKVNIPEEKQECMVGFSAEAILKALG-----GSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNAIACAEAGLLVPE-AAAQAGDGLKGVCEALG--------IPPVLHMGSCVDISRILVLASAIAKSLGVDISDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGASFAVEPDPFKAANLMLEHIEGKRKALGLN---------------- 'Methanosarcina mazei YP_007488856.1' -------------------MKQTAFEKSIDPASQKMLEKAENEGIETAWDRYEKQLPQCSFGQLGICCRNCNMGPCRIDPFGEGAEKGICGATADIIVARNLLRMIAAGAAAHSDHARDAVLTFKKMTEGEAGSYGIKDKTKLFSLASEYGISLEGKSHEEVAGELASALLAEFGKQ--EGPIQYT-RRAPEARLRLWTSLGIEPRGVDREIVECMHRTHIGVDNDATHILLHGLRTSLSDGWGGSMIATEIQDVLFGTPEPKKSTVNLGVLSHDKVNVIIHGHEPILSEMIVQAAEDPELLELAKEKGAA-GINVAGICCTGNETLMRHGTPIAGNFLQQELAVVTGAVEAMIVDVQCIMPALGNLTGCYHTKFISTSPKADFPGTVRMEFHEERAYDTAREIVRTAVENFPNRN--IEKVNIPEEKQECMVGFSAEAILKALG-----GSPAPLIDAIAGGAVKGIGAVVGCNNVKVQHNYGHVNLVKELIKNNVLVVTTGCNAIACAEAGLLVPE-AAAQAGDGLKGVCEALG--------IPPVLHMGSCVDISRILVLASAIAKSLGVDISDLPAAGAAPEWMSEKAVSIGAYVVSSGVFTVLGTVPPVLGSQAVTALLTKGLDNVIGASFAVEPDPFKAANLMLEHIEGKRKALGLN---------------- 'Moorella thermoacetica YP_430060.1' MPRFRDLSHNCRPSEAPRVMEPKNRDRTVDPAVLEMLVKSKDDKVITAFDRFVAQQPQCKIGYEGICCRFCMAGPCRIKATDGPGSRGICGASAWTIVARNVGLMILTGAAAHCEHGNHIAHALVEMAEGKAPDYSVKDEAKLKEVCRRVGIEVEGKSVLELAQEVGEKALEDFRRLKGEGEATWLMTTINEGRKEKFRTHNVVPFGIHASISELVNQAHMGMDNDPVNLVFSAIRVALAD-YTGEHIATDFSDILFGTPQPVVSEANMGVLDPDQVNFVLHGHNPLLSEIIVQAAR--EMEGEAKAAGAK-GINLVGICCTGNEVLMRQGIPLVTSFASQELAICTGAIDAMCVDVQCIMPSISAVAECYHTRIITTADNAKIPGAYHIDYQTATAIESAKTAIRMAIEAFKERKESNRPVYIPQIKNRVVAGWSLEALTKLLATQNAQNPIRVLNQAILDGELAGVALICGCNNLKGFQDNSHLTVMKELLKNNVFVVATGCSAQAAGKLGLLDPANVETYCGDGLKGFLKRLGEGANIEIGLPPVFHMGSCVDNSRAVDLLMAMANDLGVDTPKVPFVASAPEAMSGKAAAIGTWWVSLGVPTHVGTMPPVEGSDLIYSILTQIASDVYGGYFIFEMDPQVAARKILDALEYRTWKLGVHKEVAERYETKLCQGY- 'Rhodospirillum rubrum YP_426515.1' ------------------MTHHDCAHCSSDACATEMLNLAEANSIETAWHRYEKQQPQCGFGSAGLCCRICLKGPCRIDPFGEGPKYGVCGADRDTIVARHLVRMIAAGTAAHSEHGRHIALAMQHISQGELHDYSIRDEAKLYAIAKTLGVATEGRGLLAIVGDLAAITLGDFQNQDYDKPCAWLAASLTPRRVKRLGDLGLLPHNIDASVAQTMSRTHVGCDADPTNLILGGLRVAMAD-LDGSMLATELSDALFGTPQPVVSAANLGVMKRGAVNIAVNGHNPMLSDIICDVAA--DLRDEAIAAGAAEGINIIGICCTGHEVMMRHGVPLATNYLSQELPILTGALEAMVVDVQCIMPSLPRIAECFHTQIITTDKHNKISGATHVPFDEHKAVETAKTIIRMAIAAFGRRD--PNRVAIPAFKQKSIVGFSAEAVVAALAKVNADDPLKPLVDNVVNGNIQGIVLFVGCNTTKVQQDSAYVDLAKSLAKRNVLVLATGCAAGAFAKAGLMTSEATTQYAGEGLKGVLSAIGTAAGLGGPLPLVMHMGSCVDNSRAVALATALANKLGVDLSDLPLVASAPECMSEKALAIGSWAVTIGLPTHVGSVPPVIGSQIVTKLVTETAKDLVGGYFIVDTDPKSAGDKLYAAIQERRAGLGL----------------- 'Thermacetogenium phaeum YP_006919310.1' -----------------------MGERSVDQASIKMLKKAAQEGIETAWERYEKQQPQCGFGLLGICCRNCNMGPCRIDPFGDGPEEGICGATADTIAARNLLRMIAAGAAAHSDHGRDIVTTLWETAAGEAQGYQIKDEGKLRSLAAEFGIPVEGRSKEEIARDLAREAMEEFGMV--KGALKFL-ERAPQKRREVWQKAGIVPRGIDREIVECMHRTHMGVDNDYVNLVLHGVRTGLSDGWGGSMFATEFSDILFGTPEPVRGRSNLGVLKEDQVNIIVHGHEPTLSEMIVLAARDEELLAAAREKGAA-GINICGMCCTGNEILMRHGVPVAGNFLQQELAVVTGAVDAMVVDVQCVMPALTGVAGCYHTKIISTSPKARFEGAEHIPFDEHHALDTARKIVQIAVDNYPRRK--KEFVRIPEEEMEYMAGFSVEAVLKALG-----GSLNPLLDAIKAGQIKGIAAVVGCNNPKIPHDRGHLLLTEKLIKSDVLVVQTGCAAIACAKAGLLLPE-AAAQAGPGLGAVCRALG--------IPPVLHMGSCVDISRILVTAAAIANALGVDISDLPVAGAAPEWMSEKAVSIGAYVVGSGVFTVLGSIPPVLGGKKLTELLTEGARSVLGASFAVETDPEKAVDLILEHIAARRKALGLEG--------------- 'Thermoanaerobacter sp. YS13 THYS13_RS04700' ----------------------MENVHSIDPAVTKMLEIARKQGMETAWDRYLAQKPQCGFGELGICCRNCNMGPCRIDPFGEGPQKGVCGATADTIVARNLLRMIAAGASAHSDHGRDVVETLRGVGTGEAKDYTIKDEKKLMTLCKEFNITTEDKSIHEIAQELGEAALEEFGTQ--KGYIQTI-KRVPPQRKEIWKNLGIIPRGIDREIVESLHRTHMGVDHDPASLILHGLRCSLSDGWGGSMLATEFSDVLFGTPRPIRGQCNLGVIREDAVNIVVHGHEPVLSEMLVEAVQDPELEALAKKNGAS-GINLVGMCCTGNEILMRHGIPSAGNFLHQELVVMTGAIEAMVVDVQCIMPSLAQLASCYHTKFISTSPKAKFPGVLHIQFEEHHALDVAREIVRQAIENYPHRN--KSRVFIPKETAECVGGFSVEAILEALG-----GTLTPLIEAIKSKKIRGIAALVGCNNPKVTHDYNHVNMTKALIAQDVLVVETGCAAIASAKAGLLLPE-TAQLAGSGLASVCRTLG--------IPPVLHMGSCVDISRILVMAAAIAKELGVDIADLPIAGAAPEWMSEKAVSIGAYVVASGIFTVLGTVPPVLGSKTVTEILTQKAKYLVGGYFAVEPDPFKAAELIINHIDEKRAALGI----------------- 'Thermococcus onnurineus TON_1018' ----------------MAGKKVPSKQVSITPGVGKLIEKAEEDGVKTAWHRFLEQQPQCGFGLLGVCCKNCTMGPCRIDPFGVGPTKGVCGADADTIVARNIVRMIAAGTAGHSDHSRDVVHVFKGIAEGKFKDYKLTDVEKLKELAKILGVETEGKSENEIALEVAHILEMEFGKQ-DEEPVRLLAATAPKKRIKVWEKLGVLPRAIDREICLSMHRTHIGCDADPASLLLHGVRTALADGWCGSMMATYLSDILFGTPKPIKSLANLGVLKEDMVNIIVHGHNPILSMKIAEIAQSEEMQKLAEQYGAK-GINVAGMCCTGNEVLSRMGVQVAGNFLMQELAIITGAVEAVIVDYQCLMPSLVDVASCYHTKIITTEPKARIPGAIHVEFEPEKADEIAKEIIKIAIENYKNRV--PAKVYIPEHKMELVAGFSVEAILEALG-----GTLEPLIKALQDGTIKGIVGIVGCNNPRVKQNYGHVTLAKELIKRDILVVGTGCWGIAAAMHGLLTPE-AAEMAGPGLKAVCEALG--------IPPCLHMGSCVDCSRILLVLSALANALNVDISDLPVAGSAPEWMSEKAVAIGTYFVASGVFTHLGVIPPVLGSQKVTKLLTDDIEDLLGGKFYVETDPVKAAETIYNVIIEKRKKLGWPI--------------- 'Thermodesulfobacterium thermophilum WP_022856204.1' --------------------MTKQCKVSLDPAVCEMVEKARSAKVETVWDRYQAMLPQCGFGETGLCCRHCLQGPCRIDPFGGEPKLGICGATADVIVARGLDRAIAAGAASHSGHARHLAHTLKLAAKGKARDYTIKDKAKLRSVAARLGIPTEGRNIAEIALDVAEAALADFHEK--DTPVMWAATTVTKKRARLFEEKGLLPKGIDYEVSDIMHRTHYGVDADPVNLLLGGLRCGVAD-LAGCYMGTDMADILFGTPQPVVTEANMGVLKADAVNVAVHGHNPVLSEVIVAVAK--EMEAEAKAAGAS-GINVVGICCTGNEVLMRHGIPACTHSVSQEMALVTGALDAMVVDYQCIMPSLATVAECMGTKLITTMEIAKIPGAIHIEFSEEKAGEKAREILRLAIETFTRRR--GKPVDIPPYKTKVVAGFSVEAIVKALSKLNAEDPLKPLIDQIAAGNIRGVCLFAGCNNVKVPQDQNFTAIARRLLKENVLVLATGCGAGALMRHGFMDPANVGELCGEGLKAVLTAIGEANGLGGPLPPVLHVGSCVDTSRAVALAVAVADRLGVDTDQLPVVASAAEAVAEKAVSIGTYAVALGLPTHVGVMLPVLGGPLVTKVLTDKVKELTGGYFIVDLDPESAAEKLLAAIDERRAALGLSVPGGGRR--------- ; END; [ The following blocks are output data for analysis step 16675 ] BEGIN TREES; TITLE CooS_phylogeny; LINK TAXA = TaxaForAnalysisStep16675; TREE CooS_tree = [&R] (((((('Methanosaeta harundinacea YP_005920613.1':0.122016,'Methanosaeta thermophila YP_843756.1':0.152322):0.057225,((('Methanosarcina mazei NP_632145.1':1.0E-6,'Methanosarcina mazei YP_007488856.1':1.0E-6):0.042444,'Methanosarcina acetivorans NP_618172.1':0.046461):0.03966,'Methanosarcina barkeri YP_306974.1':0.077975):0.098537):0.143497,('Desulfotomaculum acetoxidans YP_003191763.1':0.246172,'Thermacetogenium phaeum YP_006919310.1':0.18941):0.057627):0.049381,(('Caldanaerobacter subterraneus pacificus_WP_009610668':0.002804,'Thermoanaerobacter sp. YS13 THYS13_RS04700':0.008382):0.124361,'Desulfotomaculum kuznetsovii YP_004518100.1':0.123907):0.124367):0.130818,'Thermococcus onnurineus TON_1018':0.361371):0.259543,('Rhodospirillum rubrum YP_426515.1':0.394315,('Moorella thermoacetica YP_430060.1':0.647671,((Carboxydothermus_pertinax_BAN17001:0.032176,'Carboxydothermus hydrogenoformans WP_011343033.1':0.01265):0.148351,(Desulfobacterium_CBX30159.1:0.240799,((('Thermodesulfobacterium thermophilum WP_022856204.1':0.005825,'Caldanaerobacter subterraneus tengcongensis_NP_623304.1':0.002536):0.06833,'Caldanaerobacter subterraneus yonseiensis_ERM92236.1':0.214167):0.03615,(Geobacillus_thermoglucosidasius_EID44395.1:0.001598,('Geobacillus thermoglucosidasius YP_004587920.1':1.0E-6,'Geobacillus sp. YP_003989188.1':1.0E-6):1.0E-6):0.199369):0.063717):0.019772):0.205564):0.089453):0.055662); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89827] END;