#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 22:57 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16699 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16699;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Burkholderia sp. YP_003609698.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91251.1'
            'Caloramator australicus WP_008908953.1'
            'Lamprocystis purpurea WP_020507591.1'
            Thermoanaerobacter_ethanolicus_JW_200_EGD52040.1
            'Thermoanaerobacter indiensis WP_019907161.1'
            Thermoanaerobacter_siderophilus_EIW00249.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39698.1
            'Thermoanaerobacter wiegelii YP_004818834.1'
            'Thermobrachium celere WP_018663243.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32870]

	TITLE MbxC_alignment;
	LINK TAXA = TaxaForAnalysisStep16699;
	DIMENSIONS NCHAR=114;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110    ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .    ]
'Burkholderia sp. YP_003609698.1'                        MFELIGSVFILLGAVFLFSAGLGLLRMPDAYTRIQAGTKASTLGNMLVLIGLAFYHPSWTFRLILLIYFVLLTNPVSSHALSRAAWLVRTPMTPSTITDALADEDARTAGKAES
'Caldanaerobacter subterraneus yonseiensis_ERM91251.1'   -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFVGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKLILKENAFSKE-----GE---
'Caloramator australicus WP_008908953.1'                 -MEILGWIFCLIGAVFLFLAGLGIYRMPDALNQSQAGTKASTLGIVSLFVGFSILKPEWVPKLIIMALFFLFSSPIASHAICKAA-LRRNKGNFYLKENAFLKD-----GE---
'Lamprocystis purpurea WP_020507591.1'                   MIRYIADLVLLAGAVFTLLGALGILRMPDVYNRIQAGTKASTLGAIGVLIGIGLLQPQWWAKLVCIAGFILFTSPVSSSTIARA--LYRSGVRPWQAAPGVADD---RTGRG--
Thermoanaerobacter_ethanolicus_JW_200_EGD52040.1         -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFIGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKLILKENAFSKE-----GE---
'Thermoanaerobacter indiensis WP_019907161.1'            -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFVGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKFILKENAFSKE-----GE---
Thermoanaerobacter_siderophilus_EIW00249.1               -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFIGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKLILKENAFSKE-----GE---
Thermoanaerobacter_thermohydrosulfuricus_EMT39698.1      -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFVGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKLILKENAFSKE-----GE---
'Thermoanaerobacter wiegelii YP_004818834.1'             -MQYIGYFFLLIGAVFLALAGLGIYRMPDVLNQSQAGTKASTMGIVGLFVGFAFLKPLWAPKLILMALFFLFTSPIASHAICKAA-IKRNKAKLILKENAFSKE-----GE---
'Thermobrachium celere WP_018663243.1'                   -MQYVGWFFILVGATFSFLAGLGIYRMPDVLNQSQAGTKASTLGILALLVGFSLLNPQASPKLILMALFFLFSSPIASHAICKAA-LRRNKANFILDSNPLLKE-----GEVND
;
END;

[ The following blocks are output data for analysis step 16699 ]
BEGIN TREES;
      TITLE MbxC_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16699;
      TREE MbxC_ML = [&R] (((('Caldanaerobacter subterraneus yonseiensis_ERM91251.1':1.0E-6,(((Thermoanaerobacter_siderophilus_EIW00249.1:1.0E-6,Thermoanaerobacter_ethanolicus_JW_200_EGD52040.1:1.0E-6)0.9120:0.010115,'Thermoanaerobacter wiegelii YP_004818834.1':1.0E-6)0.0000:1.0E-6,Thermoanaerobacter_thermohydrosulfuricus_EMT39698.1:1.0E-6)0.0000:1.0E-6)0.7960:0.010135,'Thermoanaerobacter indiensis WP_019907161.1':1.0E-6)0.8140:0.071644,('Thermobrachium celere WP_018663243.1':0.178244,'Caloramator australicus WP_008908953.1':0.155815)0.6400:0.069504)0.9950:0.4698015,('Burkholderia sp. YP_003609698.1':0.595974,'Lamprocystis purpurea WP_020507591.1':0.575489)0.9950:0.1215755)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89853]


END;