#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 19:41 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16701 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16701;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91253.1'
            'Caloramator australicus WP_008908955.1'
            'Marinitoga piezophila YP_005096354.1'
            'Thermoanaerobacter ethanolicus WP_003869961.1'
            'Thermoanaerobacter indiensis WP_019907162.1'
            Thermoanaerobacter_siderophilus_EIW00251.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39710.1
            'Thermoanaerobacter wiegelii YP_004818836.1'
            'Thermobrachium celere WP_018663239.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32872]

	TITLE MbxF_alignment;
	LINK TAXA = TaxaForAnalysisStep16701;
	DIMENSIONS NCHAR=261;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260 ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         . ]
'Caldanaerobacter subterraneus yonseiensis_ERM91253.1'   MKDETSVLVNIIAFLILFVIGIYIY-SVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDNSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGKR-TISQKSLKIIEAITGISIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
'Caloramator australicus WP_008908955.1'                 MRDERSLFINIVALLILSVIGFYIY-KVSMDTGKGIKITDNITP---QMRVADRFMNKNVIKEESKYVWGGT--AENTSANIVTSVVVDYRLFDTTLEVIVLFVTILGFGFVI---PKDKRKIIK--PTTILNRWAPILMILMLMIGGYMFVNGHLSPGGGFPAGAIISTAVLIGVLAGRK-TLSQKTLKIIEAVAGISIFSLGIASFVITGNFFQNFILNDRIGDLFSAGLIPIFYGLIAFKVAAELSNIYFEFYEEC--
'Marinitoga piezophila YP_005096354.1'                   ------MMKRVIAGLIVIVLGIFIFTSLYAPKSSEGKFFPEFGKANLSERVSDKFVKKNVTGDNGEVVYKETKDPESGSANMVTSIVVNYRSFDTLGEVTVLFVSALGVGLLL---SGKSRMKFKTPPNFILKSAVRVIAGVILITGVYIFIHGHLTPGGGFPGGSMIASAVLLFYLSDDEFKTKMKSFKLLEGTAGSLYLIFGLLGLAYGGYFLYNFLPTGTVGELFSAGIVPIIYIFVGLKVGSELSNLISDFLSEEGK
'Thermoanaerobacter ethanolicus WP_003869961.1'          MKDETSVLVNIIAFLILFVIGIYIY-IVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDNSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGRR-TISQKSLKIIEAITGISIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
'Thermoanaerobacter indiensis WP_019907162.1'            MKDETSVLVNIIAFLILFVIGIYIY-SVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDNSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGRR-TISQKSLKIIEAITGMSIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
Thermoanaerobacter_siderophilus_EIW00251.1               MKDETSVLVNIIAFLILFVIGIYIY-SVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDNSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGRR-TISQKSLKIIEAITGISIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
Thermoanaerobacter_thermohydrosulfuricus_EMT39710.1      MKDETSVLVNIIAFLILFVIGIYIY-SVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDNSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGRR-TISQKSLKIIEAITGISIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
'Thermoanaerobacter wiegelii YP_004818836.1'             MKDETSVLVNIIAFLILFVIGIYIY-SVAIDTGAGIKITDNITP---TMRVADKYLNKNVLDDSSTYQWGGT--AEDTAANIVTSVVVDYRLFDTTLEVIVLFITILGFGFVI---PKDKRKIIK--PTTILNRWAPILMLLMLMIGGYTFINGHLSPGGGFPAGAIISTAILTGVLTGRR-TISQKSLKIIEAITGISIFSIGIISYFLTGSFFQNFILNDKIGDLFSGGLIPIFYGLIAFKVAAELSNIYFEFYEE---
'Thermobrachium celere WP_018663239.1'                   MKDEKSLFINIVALLILSFMAFYIY-KVSIDTGSGIKITDSITP---KMRVADKYLNKNVLNENSTYKFSQT--AEDTSANIVTSVVVDYRLFDTTLEVIVLFVTILGFGFVI---PKDKRRVKM--PSVILYRWAPILMILMLMIGGYMFINGHLSPGGGFPAGAIISTAVLIGVLAGRK-TVNHKTLKVVEAVAGISIFAIGIASFFIKGVFFQNFITGDRIGDLFSGGLIPVFYGLIAFKVAAELSNIYFEFYEEC--
;
END;

[ The following blocks are output data for analysis step 16701 ]
BEGIN TREES;
      TITLE MbxF_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16701;
      TREE MbxF_ML = [&R] ('Marinitoga piezophila YP_005096354.1':0.848339,((((((Thermoanaerobacter_thermohydrosulfuricus_EMT39710.1:1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM91253.1':0.00414)0.0000:1.0E-6,('Thermoanaerobacter indiensis WP_019907162.1':0.004147,Thermoanaerobacter_siderophilus_EIW00251.1:1.0E-6)0.0000:1.0E-6)0.0000:1.0E-6,'Thermoanaerobacter wiegelii YP_004818836.1':0.004146)0.0000:1.0E-6,'Thermoanaerobacter ethanolicus WP_003869961.1':0.004181)1.0000:0.136197,'Thermobrachium celere WP_018663239.1':0.12608)0.2680:0.068608,'Caloramator australicus WP_008908955.1':0.003741)0.0000:0.639353)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89855]


END;