#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on June 14, 2024; 6:43 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16702 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16702;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91254.1'
            'Caloramator australicus WP_008908956.1'
            'Kosmotoga olearia TBF 19.5.1 YP_002941740.1'
            'Mesotoga prima YP_006346695.1'
            Thermoanaerobacter_ethanolicus_EGD52037.1
            Thermoanaerobacter_siderophilus_EIW00252.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39685.1
            'Thermoanaerobacter wiegelii YP_004818837.1'
            'Thermobrachium celere WP_018663238.1'
            'Thermococcus kodakarensis YP_183634.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32873]

	TITLE MbxG_alignment;
	LINK TAXA = TaxaForAnalysisStep16702;
	DIMENSIONS NCHAR=122;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120  ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .  ]
'Caldanaerobacter subterraneus yonseiensis_ERM91254.1'   -MQVFILSSLSLMFIGLYGVLTRKNLLKIIIALNIIETGINLLLVSFGYIDHGITPILTSQESILNLNKM--VDPVPQALVLTSIVIGLGTTAFALALAIRYKITHNSISINASEEEEGRGI
'Caloramator australicus WP_008908956.1'                 MAQLFILSSISLLFIGLFGVLTRKNIVKILIALNIMETGINLLLVAFGYVENGIVPILTSNESIMNLTKM--VDPVPQALVLTSIVIGLGTTAFSLALAIRYRYNHNSLSIRASEEEEGVNI
'Kosmotoga olearia TBF 19.5.1 YP_002941740.1'            MIQYF---SIILFVLGIYGLLTQKNLVKMVVSLNIMDVGINLFIISLGYVDGGKAPILSP---WTPESTLNFVDPLPQALVLTAIVIGVGITALALSLIIKIHRTYGSVDLDEIR---GNVK
'Mesotoga prima YP_006346695.1'                          MIQYF---SMMLVAVGLYGLLSQKNLVKLIISLNIAEIGVNLFIVSIGYIEGGAAPILSS---VSDNSSLLFVDPLPQALVLTSIVIGVGVTALALSLIVSVSKSRGTIDISELSSGGGDSE
Thermoanaerobacter_ethanolicus_EGD52037.1                MTQVFILSSLSLMFIGLYGVLTRKNLLKIIIALNIIETGINLLLVSFGYIDHGITPILTSQESILNLNKM--VDPVPQALVLTSIVIGLGTTAFALALAIRYKITHNSILINASEEEEGRGI
Thermoanaerobacter_siderophilus_EIW00252.1               MTQVFILSSLSLMFIGLYGVLTRKNLLKIIIALNIIETGINLLLVSFGYIDHGITPILTSQESILNLNKM--VDPVPQALVLTSIVIGLGTTAFALALAIRYKITHNSILINASEEEEGRGI
Thermoanaerobacter_thermohydrosulfuricus_EMT39685.1      MTQVFILSSLSLMFIGLYGVLTRKNLLKIIIALNIIETGINLLLVSFGYIDHGITPILTSQESILNLNKM--VDPVPQAIVLTSIVIGLGTTAFALALAIRYKITHNSISINASEEEEGRGI
'Thermoanaerobacter wiegelii YP_004818837.1'             MTQVFILSSLSLMFIGLYGVLTRKNLLKIIIALNIIETGINLLLVSFGYIDHGITPILTSQESILNLNKM--VDPVPQALVLTSIVIGLGTTAFALALAIRYKITHNSISINASEEEEGRGI
'Thermobrachium celere WP_018663238.1'                   MTKVFILSSLSLVFVGLYGVLTRKNIVKILIALNIIETGINMLLVAFGYIEGGLTPILQSDLSIANLDKM--VDPVPQALVLTSIVIGLGTTAFALALAMRYKNTHNSISIRATDEE-GVNV
'Thermococcus kodakarensis YP_183634.1'                  MISVYYFGAIALVLIGLYGVLVKKNLMKILISLSIMETGVNLLLISVGYVSGKSAPILSEGIKWNQA-----VDPIPQALVLTAIVIGVATTAMALSAAILIYEKYGTLNVEEIRRLRG---
;
END;

[ The following blocks are output data for analysis step 16702 ]
BEGIN TREES;
      TITLE MbxG_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16702;
      TREE MbxG_ML = [&R] ((((Thermoanaerobacter_thermohydrosulfuricus_EMT39685.1:0.00929,((Thermoanaerobacter_siderophilus_EIW00252.1:1.0E-6,Thermoanaerobacter_ethanolicus_EGD52037.1:1.0E-6)0.9110:0.009428,'Thermoanaerobacter wiegelii YP_004818837.1':1.0E-6)0.0000:1.0E-6)0.0000:1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM91254.1':0.009328)0.2480:0.047905,('Thermobrachium celere WP_018663238.1':0.109559,'Caloramator australicus WP_008908956.1':0.142921)0.2130:0.048674)0.9970:0.397856,('Thermococcus kodakarensis YP_183634.1':0.359168,('Mesotoga prima YP_006346695.1':0.301376,'Kosmotoga olearia TBF 19.5.1 YP_002941740.1':0.205854)0.6900:0.196107)0.9970:0.091968)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89856]


END;