#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 22:56 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16704 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16704;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91255.1'
            'Caloramator australicus WP_008908957.1'
            Thermoanaerobacter_ethanolicus_EGD52036.1
            'Thermoanaerobacter indiensis WP_019907163.1'
            Thermoanaerobacter_siderophilus_EIW00253.1
            'Thermoanaerobacter thermohydrosulfuricus WP_004399466.1'
            'Thermoanaerobacter wiegelii YP_004818838.1'
            Thermobrachium_celere_CDF59381.1
            'Thermococcus sp. 4557 YP_004762126.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32874]

	TITLE MbxH_alignment;
	LINK TAXA = TaxaForAnalysisStep16704;
	DIMENSIONS NCHAR=506;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500      ]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
'Caldanaerobacter subterraneus yonseiensis_ERM91255.1'      MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIIAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
'Caloramator australicus WP_008908957.1'                    MNS--IVFLIVIPLIAAFLSLFLGKNDKI----LAYIVTLFNIIFSILILFSGK-----IPFNVAIGGWRAPYGINYAVTDLTIFFLVLVNVAALLALTSVREIMEYQ----FYSFYFVLLSSTNGIVLTGDLFNFFLFIELSTFAVAGLISYKRDRLSTGAALKYLILSSTASIFSLAAIGLIYKTLGTLNFADIANKVNNLNEASLSLILILYISSLLVELKIFPFNMWVVKAYEASKTSVNLFIHGMLGTAGIYGVLRILLMVFSKETGKLTLSGNLSSILMLFAFVTVIIGEIGALTEKNMKKILAFSSMAQLGIVLFGISLGSFDALKGVLYIVISNYLAKFVMFLTVNEFSKVSGSTNYLDMKGLGRRYPVLAISFTISALSLMGIPFFAGFWGKISIIGNAVFSGKLELIGAVLILIASVIEGVYYLRISHTFFSQGHEREGRISRVYCLLPMILALVILFIGINPDSFENIISILLDEI-KSPEKYIKLILSLK----
Thermoanaerobacter_ethanolicus_EGD52036.1                   MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASIFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNLWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGVMSDQSSNIANILILLAFITVMIGEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLIMFIVAKNYSVVAGSRNYNAMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAITGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
'Thermoanaerobacter indiensis WP_019907163.1'               MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSIVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNSIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIVAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
Thermoanaerobacter_siderophilus_EIW00253.1                  MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASIFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNLWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGVMSDQSSNIANILILLAFITVMIGEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLIMFIVAKNYSVVAGSRNYNAMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAITGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
'Thermoanaerobacter thermohydrosulfuricus WP_004399466.1'   MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSIVVLVSGK-----IPFNVAIGGWRAPYGINFVVSDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNSIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKFVMFIVAKNYSVIAGSRNYEDMKGLGRKYPGLAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMDKIAIIGVIIILISSVIEGVYYLRISHTFFSDGNIQDTKLSRINCVLPIILAAVILIIGIYPNSIENIIWTMINEIQNTPEKYIQVILPLK----
'Thermoanaerobacter wiegelii YP_004818838.1'                MNS--IVFLVVIPIIAAFLSLFLGKVNKL----IAYIVTIFNLSFSVVVLVSGK-----IPFNVAIGGWRAPYGINFVVTDITIFFLLLINVAAVLSLTTIKEHMEYQ----FYAFYFILLAATNGMVLTGDIFNFYLFTELTTFAIGGLVAYKRDRLATGASLKYLILSSTASTFSLAAIGLIYKTLGTLNFADIASKISNLNKASLSLILILFISSMLVELKIFPFNIWVVKAYDASIPAVNLFLHGMVSTAGVYGAIRILLMVFSKNGIMLSQSSNIANILILLAFITVIISEIGALTEKNLIKVLAFSSMAQLGIFLFGISLGNYEALKGAFYIVISNYFAKLVMFIVAKNYSVIAGSRNYDDMKGLGRKYPILAIAFTISALSLMGMPFFAGFWGKLSIVGNALLMGKIAITGVIIILISSVIEGVYYLRISHTFFSDRNIQGTELSRINCVLPIVLAAVILIIGIYPHSIENIIWTMINEIQNTPEKYIQVILSLK----
Thermobrachium_celere_CDF59381.1                            MNS--IVFLVVIPLIAAFLSLFLEKLNKL----AMYIVTLFNLIFSITVLMSGN-----IPFNVAIGGWRAPFGINFVVTDITIYFLLLVNIAALISITVVNNIKEYQ----FYSFYFVLLAATNGMVLTGDMFNFYLFTELSTFAIAGLVAYKRDRLSTGAALKFLILSSTASLFSLASIGLIYKTLGTLNFADIALKLSKLNQASYNLILILFLSSMLVELKIFPFNLWVVKSYEGSITSVNMFTHGMLGTAGIYGAIRILLIVFPNMY-----STNISKVLIILSVFTVLIGEVGALKEKNLVKILAFSSMAQMGVFMFGIALGSFESIKGALYIVVSNYLAKLVMFLVTKQYSNAVESKNYIDMKGLGRKYPILAISFTIAALSLMGMPFFAGFWGKFSIVVSALALGKLSTIGIAILLIASVVEGVYYLRISHTFFAEKDVNSVNISRVYSLIPFVLAAIILAIGIYPNFIEQILWNVIDEIKNAPDKYINIILSLK----
'Thermococcus sp. 4557 YP_004762126.1'                      MNGQYASLLIALPLISAFFVPLIKGAGKKAVKYYLIAVTAVQTGIAAWVFQQVYTTG--QPIIVMAGAWRPPVGINLYIGHFAALFVLIVAVVSFLMAVFSLRAVKVEPIDKYAMLFLLLMLGATGMIATGDLFNLFVFMEITAISAYALTAYNKTGEAAEASMKYIVLGGIGSSFFLIGIALIYGSLGTLNMAQIAQLAGGMDATVAQVGLALIVFGLAVEAELFPLNAWAPDAYQAAPHPITAMFSAFVVKAGLYAMARLLYLMQAVES-----WHSVLKLLIIMATLTVFVAEFAALRQRNVKRMIAYSSIAQIGLIALAFALGTQSGVDAGVFHMVNHAIVKALLFLAVGHVAVTLGGAEMERFEGLGKKMPLTAFAITVGAVAAVGIPLFNIFWSKLRILLAAIGAGYAWAAA--IVLIASVVEAVYYFRLIHTMWFAGEGERISEGLAVSLMLLFLAALVIVIGVYPDYAWNIAQKAGNDIFNVAQ-YIKNV-PLMGVGA
;
END;

[ The following blocks are output data for analysis step 16704 ]
BEGIN TREES;
      TITLE MbxH_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16704;
      TREE MbxH_ML = [&R] ('Thermococcus sp. 4557 YP_004762126.1':1.1481705,(((('Caldanaerobacter subterraneus yonseiensis_ERM91255.1':0.002046,('Thermoanaerobacter thermohydrosulfuricus WP_004399466.1':0.002049,'Thermoanaerobacter indiensis WP_019907163.1':1.0E-6)0.8800:0.004129)0.8070:0.004947,(Thermoanaerobacter_siderophilus_EIW00253.1:1.0E-6,Thermoanaerobacter_ethanolicus_EGD52036.1:1.0E-6)0.9820:0.016841)0.4150:0.007808,'Thermoanaerobacter wiegelii YP_004818838.1':0.010791)0.0150:0.053942,('Caloramator australicus WP_008908957.1':0.212894,Thermobrachium_celere_CDF59381.1:0.232487)0.0340:0.088046)0.0000:0.8276375)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89857]


END;