#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 22:58 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16716 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16716;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91256.1'
            'Caloramator australicus WP_008908958.1'
            'Fervidobacterium nodosum YP_001411232.1'
            Thermoanaerobacter_ethanolicus_EGD52035.1
            'Thermoanaerobacter indiensis WP_019907164.1'
            Thermoanaerobacter_siderophilus_EIW00254.1
            'Thermoanaerobacter thermohydrosulfuricus WP_004399465.1'
            'Thermoanaerobacter wiegelii YP_004818839.1'
            'Thermobrachium celere WP_018663234.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32888]

	TITLE 'MbxH'' alignment';
	LINK TAXA = TaxaForAnalysisStep16716;
	DIMENSIONS NCHAR=634;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630    ]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
'Caldanaerobacter subterraneus yonseiensis_ERM91256.1'      -MVEILLVPLITAVISAIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLTYILNTDYQIFGAKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANLGIFYAADWITFFMMWELMGWTSFFAITNGNTKALDGAKY-YLALSLLGGSSMLIAILLLGAYTKTFIIITSAYRLIQLFNLAEGVFTTILLLFIMAFFIKSAIFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLSGLVYKMPITFLTFLFGIIAAAGIPPLNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVVPGVVMKPLTIALDALGYKVDIATWTTLSSSFKNATIDLKIVFYMFAMGIVVAALMYLFGNKSETVPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLLIL--GGWIL
'Caloramator australicus WP_008908958.1'                    -MVEIFIIPLVTAFLLAIFIRNKKVV--WPLFLISNLYILLKLWTLFGKWEIEKTIYTNYELFGAKLSFTLSNNPLGWYFAFFSAVITLVISVFSLGFNQKTKENVA--PIWMLIIFSNLGIFFAADWITFFMMWELMGWTSFFAITNGRDKALNEAKY-YLVLSLLGASSMLIGIILLGALTGSFEIFASAYGLVQVFYSEKALSIAAIMLLLFAFFIKSAIFPFYMWPSKVYAVGPEDYITFMSSVMIKYGIYPIAM--FIVPVVGSLDLPKILNTANWIQYFVGYLGAISAVLGTILAIFQTDMKKLFAYSSVANMGYILLGFASMNIVGFEGALFHAVNHMVLKAAIFLTLAAVIFRTGESEMHKLGGLVYRMPITFLTFLLGIIAAAGIPPLNGFGSKWMIIQALMSQKMIIFAIAMIFASTGAFMYLFRALASIFLGQLPDRFKDIKEVPLTMLIPMIIMMIGMLLIGVVPGVVMKPLTTALRAVGYNVNIASWTSLEGALKNSTIDLTLVFLIFLGGFVISAIMYILGNKSETVPQEDNYTGGEYPEEWGVNADRFNYSYSFYQPFKEMFEPLLEKISIDEFFASIGRNFEYMSATVQGLFRRGEGAVLLFSIGVLLLIL--GGWII
'Fervidobacterium nodosum YP_001411232.1'                   -MQTLILYMAIGSLVSFLLSKINKHIGPVVMFALSI-YALISL------WNM--PTNTVESLFG--FENVLQLTAMGKYFAILSLIVFANFSFFNISWISKAKNPHAFNALSVITMLGTIGVFFSSHLIVLYIFWEIAVLGSLFIVPMGKEESRKATIW-YVVISAIGTYMFLYGAFLLYSKFGTFNIFEIGNELQ---NTSLGFRWAVVLLLLSAGIAKSGIFPLHTWLRNVHGNAPDTFSAVLSGQLVKMGSYILALVLTVFPIASMF--SEFYHGVNLLSYILIWLGNLSILIGTLMAIKQNDMKMLIAYSTVANGGYILIGLATLDNVGYAGGLFHVINHALAATMIFLSFAAVVYRTGTTKIDELGGLIHRMPITFVTYLVGIISLAGIPPTSGFISKWMIFQSLVSRGMFVTEMFVFIGSIGSFLYVFRPLAGVFLGQLKSAHKEVKEAPIFMTIPMIILVILTVLWGVFPQQVLVWITDIQKEFGMEPFKFEGTKLYTSM--GYWDTWTVFVMFAVGFIIAAVIYVLMPKGKKIPLEDQYTSGEFLH----NFDLYHYATKFYAFLEREYEG---HPSFENLYMSLVNVLKAVGKGID-YFARRTASAYLFWTAVVLALLLWVRW--
Thermoanaerobacter_ethanolicus_EGD52035.1                   -MVEILLVPLITAVISAIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLTYILNTDYQIFGAKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANLGIFYAADWITFFMMWELMGWTSFFAITNGNTKALDGAKY-YLALSLLGGSSMLIAILLLGAYTKTFIIITSAYRLIQLFNLAEGVFTTILLLFIMAFFIKSAIFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLGGLVYKMPITFLTFLFGIIAAAGIPPLNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVVPGVVMKPLTIALDALGYKVDIATWTTLSSSFKNATIDLKIVFYMFAMGIVVAALMYLFGNKSETVPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLLIL--GGWIL
'Thermoanaerobacter indiensis WP_019907164.1'               -MVEILLVPLITAVISDIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLTYILNTDYQIFGAKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANLGIFYAADWITFFMMWELMGWTSFFAITNGNTKALDGAKY-YLALSLLGGSSMLIAILLLGAYTKTFIIITSAYRLIQLFNLAEGVFTTILLLFIMAFFIKSAIFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLGGLVYKMPITFLTFLFGIIAAAGIPPLNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVVPGVVMKPLTIALDALGYKVDIATWTTLSSSFKNATIDLKIVFYMFAMGIVVAALMYLFGNKSETVPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLFIL--GGWIL
Thermoanaerobacter_siderophilus_EIW00254.1                  -MVEILLVPLITAVISAIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLTYILNTDYQIFGAKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANLGIFYAADWITFFMMWELMGWTSFFAITNGNTKALDGAKY-YLALSLLGGSSMLIAILLLGAYTKTFIIITSAYRLIQLFNLAEGVFTTILLLFIMAFFIKSAIFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLGGLVYKMPITFLTFLFGIIAAAGIPPLNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVVPGVVMKPLTIALDALGYKVDIATWTTLSSSFKNATIDLKIVFYMFAMGIVVAALMYLFGNKSETVPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLLIL--GGWIL
'Thermoanaerobacter thermohydrosulfuricus WP_004399465.1'   -MVEILLVPLITAVISDIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLTYILNTDYQIFGAKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANLGIFYAADWITFFMMWELMGWTSFFAITNGNTKALDGAKY-YLALSLLGGSSMLIAILLLGAYTKTFIIITSAYRLIQLFNLAEGVFTTILLLFIMAFFIKSAIFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLGGLVYKMPITFLTFLFGIIAAAGIPPLNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVVPGVVMKPLTIALDALGYKVDIATWTTLSSSFKNATIDLKIVFYMFAMGIVVAALMYLFGNKSETIPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLFIL--GGWIL
'Thermoanaerobacter wiegelii YP_004818839.1'                -MIEILLVPLITAFISAIFIKNKRLV--WFLFLISNGYILYKLYSLYGKWDLSYILNTDYQIFGVKLSLGLSNNPLGWYFAFFSAVVTLVIAIFSIGFNTNSKGNVA--PIWMLIIFANIGIFYAADWITFFMMWELMGWTSFFAITNGNAKALDGAKY-YLALSLLGGSALLVAILLLGAYTKTFIIITSAYRLVQLFNLAEGVFTTILLLFIMAFFIKSAVFPFYMWPSKVYAVGPEDYIAFMSSVMIKYGIYPMAI--FIVPVIGNLQLPKIFNAGNWMQYFIGYLGALSAVVGTLLAMFQTDMKKLFAYSSVANMGYILLGFASMSIVGFEGSLFHVVNHIVLKAAIFLSLAAVVYRTGESEMHKLGGLVYKMPITFLTFLFGIIAAAGIPPFNGFGSKWMIIQALMEKKMVVLVISMVFASTGAFMYLFRALVSIFLGQLPERYKDVKEVPYTMSIPMIIMMGLMLLIGVLPGVVMKPLTIAMRAMGYQVDIASWTTLTSSFRNSTVDLRIVFYMFAMGIVVAALMYLLGNKSETVPQHDNYTAGENPIEWGVDADKFNYSYSFYQPFKEMFDPLFERISIDRFFSSIGKNFEYISPTIQGLYKRGEGAVLLFSIGVLLFIL--GGWIL
'Thermobrachium celere WP_018663234.1'                      -MIELLLVPLITTLVLAFFIRYKRIT--WTLFLAANGFVLYKLYSIYGIWNLSYKVDTAYKILGAELTLGVSNNPIGWYFAFFSALITLLISLFSIGFNKNSRSNVS--VIWMLIIFSNLGIFFAQDWVTFFMMWELMGWTSFFAITNGKDKALDGAKY-YLALSLFGAALMLIAISVLAQYTGTFQIFASAYGLLQIINSSTKLGIGILLLFLTTFLIKSAIFPFYMWPQKVYSEGPEDYITFMSSVMIKYGIYPMAI--FIVPVVGSADLPMILNTGNVLQYTIGYLGAISAILGTILAIFQTDMKKLFAYSSVANMGYILLGFSSMTIVGFEGSLFHVVNHMILKAAIFLTLAAVVFRTGESEMHKLGGLVYRMPLTFMTFLLGIIAAAGIPPLNGFGSKWMIIQALMSKRMVVFAIAMIFASTGAFMYLFRALASIFLGQLPDRYKDVKEVPPTMAIPMFIMMVIMLLTGVVPGVVMKPLTSALKAVGYNVEVASWTTLEGSLKNSVIDLKIVFYMFVAGVIISALMYFFGNKSEKVPQNDNYTAGEYPEEWGVDADRFNYSYAFYQPFKEMFEPLLESVSIDGFFASIGRNFEFLSSTIQGLFKRGEGAVLLFSIGVLLLIL--GGLII
;
END;

[ The following blocks are output data for analysis step 16716 ]
BEGIN TREES;
      TITLE 'MbxH'' phylogeny';
      LINK TAXA = TaxaForAnalysisStep16716;
      TREE 'MbxH'' ML' = [&R] ('Fervidobacterium nodosum YP_001411232.1':0.8651175,((((((Thermoanaerobacter_ethanolicus_EGD52035.1:1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM91256.1':0.001701)0.0000:1.0E-6,Thermoanaerobacter_siderophilus_EIW00254.1:1.0E-6)0.7420:0.001576,('Thermoanaerobacter thermohydrosulfuricus WP_004399465.1':0.001702,'Thermoanaerobacter indiensis WP_019907164.1':1.0E-6)0.7860:0.001833)0.5170:0.011165,'Thermoanaerobacter wiegelii YP_004818839.1':0.025523)1.0000:0.154194,'Thermobrachium celere WP_018663234.1':0.161498)0.7660:0.045538,'Caloramator australicus WP_008908958.1':0.09927)0.0000:0.6398625)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89862]


END;