#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 19:41 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16718 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16718;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91258.1'
            'Caloramator australicus WP_008908961.1'
            Thermoanaerobacter_ethanolicus_EGD52032.1
            Thermoanaerobacter_siderophilus_EIW00257.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39682.1
            'Thermoanaerobacter wiegelii YP_004818842.1'
            'Thermobrachium celere WP_018663228.1'
            'Thermosipho africanus YP_002335463.1'
            'Thermosipho melanesiensis YP_001306459.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32944]

	TITLE MbxK_alignment;
	LINK TAXA = TaxaForAnalysisStep16718;
	DIMENSIONS NCHAR=176;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170      ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
'Caldanaerobacter subterraneus yonseiensis_ERM91258.1'   MKLDKESIIELLNQ--KGVEVLDLYPNQISVNIKKDNLLNHLVFLRSIGFDHLSFINAVDFIDEGEFELVYHVWSYTHKIHILNKVRISRTNPVIPTIVNLWEQAQFYEQEIHEFFGITFEGNKDLSPLFLENWVDIPPLRKDFDTKEFSARLFGAEIRR----------------
'Caloramator australicus WP_008908961.1'                 MKLSKEEIIDLLKQ--RGLEVNDLYPTQISVIVNKENLINHLVYLKSIGFDHLSFINAVDFIDEGEFELVYHVWSYTNKVHVLNKVRIDRNDPKIPTIVDLWEQAQFYEQEVHEFFGIVFEGNKDLSPLFLENWLDIPPLRKDFDTREFSIRLFDAKPNGGDR-------------
Thermoanaerobacter_ethanolicus_EGD52032.1                MKLDKESIIELLNQ--KGVEVLDLYPNQISVNIKKDNLLNHLVFLRSIGFDHLSFINAVDFIDEGEFELVYHVWSYTHKIHVLNKVRISRNNPVIPTIVNLWEQAQFYEQEIHEFFGIIFEGNKDLSPLFLENWVDIPPLRKDFDTKEFSVRLFGAEIRR----------------
Thermoanaerobacter_siderophilus_EIW00257.1               MKLDKESIIELLNQ--KGVEVLDLYPNQISVNIKKDNLLNHLVFLRSIGFDHLSFINAVDFIDEGEFELVYHVWSYTHKIHILNKVRISRTNPVIPTIVNLWEQAQFYEQEIHEFFGITFEGNKDLSPLFLENWVDIPPLRKDFDTKEFSARLFGAEIRR----------------
Thermoanaerobacter_thermohydrosulfuricus_EMT39682.1      MKLDKESIIELLNQ--KGVEVLDLYPNQISVNIKKDNLLNHLVFLRSIGFDHLSFINAVDFIDEGEFELVYHVWSYTHKIHVLNKVRISRNNPVIPTIVNLWEQAQFYEQEIHEFFGIIFEGNKDLSPLFLENWVDIPPLRKDFDTKEFSVRLFGAEIRR----------------
'Thermoanaerobacter wiegelii YP_004818842.1'             MKLDKESIIELLNQ--KGVEVLDLYPNQISVNIKKDNLLNHLVFLRSIGFDHLSFINAVDFIDEGEFELVYHVWSYTHKIHVLNKVRISRNNPVIPTIVNLWEQAQFYEQEIHEFFGIIFEGNKDLSPLFLENWVDIPPLRKDFDTKEFSVRLFGAEIRR----------------
'Thermobrachium celere WP_018663228.1'                   --MQKSDIVKLLLD--RGYSVFDLYHNQIALAVKKENLLNDLIFLRSIGFEHLSFITAVDFIDEGEFEVVYHIWSYTHKVHILVKVRVDRNNPVVPTIINLWEQAQFYEQEVHEFFGIKFEGNNDLSPLFLENWVDIPPLRKDFDTREFSIRLYDAEVDGGDR-------------
'Thermosipho africanus YP_002335463.1'                   MTNSMNNALEKLKSLIGEFELIEIDEREVKINLKPESVLQALSLLKGEGYFHLSLLSAVDWIDERKFELVYILYSWNDGGKIIVSTKIDRDKAEFVTVKHMWPVARFYERELHEFFGISFKGNDDMRPLFLENWDDLPPLRKDFDPLEYSKRKFPDREYKKDVIHEAKIIRGDING
'Thermosipho melanesiensis YP_001306459.1'               MTSFMSDVIKKIEKIFNDIEIVEIDSREIKINVKPESIVSILSMLKGEGYSHLSLLTAVDWIEENKFELVYILFSWKDGSKIIVSTKIERGNSQFVTVKHLWSIARYYEREIHEFFGINFEGNDDMKPLFLENWDDIPPLRKDFDPMEYSRKKFPDREYKKDVIHEAKIIRGDLNG
;
END;

[ The following blocks are output data for analysis step 16718 ]
BEGIN TREES;
      TITLE MbxK_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16718;
      TREE MbxK_ML = [&R] ((((((Thermoanaerobacter_ethanolicus_EGD52032.1:1.0E-6,'Thermoanaerobacter wiegelii YP_004818842.1':1.0E-6)0.0000:1.0E-6,Thermoanaerobacter_thermohydrosulfuricus_EMT39682.1:1.0E-6)0.0000:1.0E-6,('Caldanaerobacter subterraneus yonseiensis_ERM91258.1':1.0E-6,Thermoanaerobacter_siderophilus_EIW00257.1:1.0E-6)0.9190:0.02545)0.9490:0.107142,'Caloramator australicus WP_008908961.1':0.138988)0.3360:0.074339,'Thermobrachium celere WP_018663228.1':0.173433)1.0000:0.65271,('Thermosipho africanus YP_002335463.1':0.280428,'Thermosipho melanesiensis YP_001306459.1':0.103599)1.0000:0.585609)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89881]


END;