#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on November 09, 2026; 3:07 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16719 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16719;
        DIMENSIONS NTAX=10;
        TAXLABELS
            'Aciduliprofundum boonei YP_003482748.1'
            'Aciduliprofundum sp. YP_007246715.1'
            Beggiatoa_sp._EDN67260.1
            'Caldanaerobacter subterraneus yonseiensis_ERM91259.1'
            'Caloramator australicus WP_008908962.1'
            Thermoanaerobacter_ethanolicus_EGD52031.1
            Thermoanaerobacter_siderophilus_EIW00258.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39651.1
            'Thermoanaerobacter wiegelii YP_004818843.1'
            'Thermobrachium celere WP_018663227.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32945]

	TITLE MbxL_alignment;
	LINK TAXA = TaxaForAnalysisStep16719;
	DIMENSIONS NCHAR=394;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390    ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .    ]
'Aciduliprofundum boonei YP_003482748.1'                 -------------MKE----FELFIGPQHPGITGNFMYHLWVDGDTIVKAEAHPGYLHRGFEKLMEKRTWQMNVALIPRICVPEPDVNEAVYAMAVESLMDWDIPERAKYIRTIVLEMARLSSHLLTLGGYAGAIGLYTVGQWTIGDRDYLLDLFEQLTGARVYHIFIFPGGVRWDLPDGFLRKLEKVLNYLESRLEFYDKLLFANEVFFRRAPDVGVVPKDKAIEWGITGPNLRACGYEYDVRKVDPYAAYPDLDFEIPHYPKFGDFEVLGHGCDCYSRMIVRRLEIEQSIRILRQVIKKIP--DGPHTLKLPNPIAWKVPAGYAYARVESSKGEYGYFVISDGGKMPYRVHVRGPSYTHGINVTETIAKGLNIADFSQTIFSLDVCAPDIER
'Aciduliprofundum sp. YP_007246715.1'                    -------------MKE----FELFVGPQHVGVTGNMMYHVWVDGDTVVKVETNVGYLHRGFEKLMERRSWLMNVALIPRICVPEPDVNEAVYAMAVESLMDWDIPERAKYIRTIVLEMARISGHLLAISGYAGAIGLYTLPNWAIGDRDYLLDLFEQLTGARVYHIFIFPGGVRWDLPDGFLRKLKKVLDYLEERLKLYDEVMFRNEIFFRRAIDVGVIPKDKAIEWGVTGPNLRACGYPYDVRKVDPYAAYPDLEFEIPHYPKFGEFEAYGHGCDAYSRMIVRRLEIEQSIRILRQIIKKIP--EGPHTLKLPNPLAWKVPAGYAFARVESSKGEFGYLVVSDGGKMPYRVHVRGPSYTHGINVIEKISPGLNIADFSPTAFSLDVCPPDIER
Beggiatoa_sp._EDN67260.1                                 MRPENYQPVEHPASHE----YELYFGPNHPGIEGNYALKVRLSGDEVVGVKADAGYLHRGFEKIMEERLWIQNVALVPRICVPDPPPMEETYARAVEMLGGLEVPERAQWIRVMMLEMSRIAAHLFIAGGTSATTGQYSNMFWGIADRDLILDLFEELTGARIYNMFITPGGVRRDIPDGFLDRLGQVLDFLEARLPEYDDLFFDNPVFHRRAEGIGKMTQEQALAWGVTGPNLRACGLPFDVRRNDPYLVYEQLDFDIPTET----------GGDVLDRIRVRRSEIIESTKILRQVIQRLPHVKGPIRCHLPNPLAWNVPEGDAYARTEAQKGELGFYAVSTGGTKPWRVHVRGPSCMHAVQVLEKLCLGARIEDIAMIMFSLDACPPEVDR
'Caldanaerobacter subterraneus yonseiensis_ERM91259.1'   MMDAPSYMLSKIAEKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAASVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLEKRLIEYDKLLFENPIIHKRLKGLGYVSKDDAVKYGLTGPNLRASGNPYDVRVDDPYAAYPYLDVRVITQE----------GGDALTRAVQIRLEFEETIKLIRQALKTMP--EGEIRLNLGNLSTLKVPKGEAYARVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDIDK
'Caloramator australicus WP_008908962.1'                 -MDAPSYMLTKIAEKDDLAVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGQLHRGFEKLMEQKLWVQNIALVPRICVVDPDPNEVAYCTAIEKIMGIEIPDRAKFIRTITLEMSRLTSFLMGMGALGAALGLYTPMYIMTADRDLILDLFEWLTGGRIYHIFNIPGGVRNDLPEGWVDRLNKVLDHLEKRLIEYDKILFENPIVHKRLKGLGYVSKEDAVRFGLTGPNLRASGNPYDVRVDDPYAAYAYLDVKVIIQE----------GGDALTRAVQVRIEFEETIKLIRQALKLMP--EGEVRLNLGNLAMLKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMGSLAICPPDIDK
Thermoanaerobacter_ethanolicus_EGD52031.1                MMDSPSYMLSKIAEKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAAAVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLEKRLIEYDKLLFENPIIHKRLKGLGYVSKEDAVKYGLTGPNLRASGNPYDVRVDDPYAAYPYLDVRVITQE----------GGDALTRAIQIRLEFEETINLIRRALKTMP--EGEIRLNLGNLSALKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDIDK
Thermoanaerobacter_siderophilus_EIW00258.1               MMDAPSYMLSKIAEKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAASVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLEKRLIEYDKLLFENPIIHKRLKGLGYVSKDDAVKYGLTGPNLRASGNPYDVRVDDPYAAYPYLDVRVITQE----------GGDALTRAVQIRLEFEETIKLIRQALKTMP--EGEIRLNLGNLSTLKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDIDK
Thermoanaerobacter_thermohydrosulfuricus_EMT39651.1      MMDSPSYMLSKIAEKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAAAVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLEKRLIEYDKLLFENPIIHKRLKGLGYVSKEDAVKYGLTGPNLRASGNPYDVRVDDPYAAYPYLDVRVITQE----------GGDALTRAIQIRLEFEETINLIRRALKTMP--EGEIRLNLGNLSALKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDIDK
'Thermoanaerobacter wiegelii YP_004818843.1'             MMDSPSYMLSKIAEKDNLTVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVADPDPNEVAYCTAIEKILRVDIPDRAKFLRTITLEMSRLSSFLMGMGALAAAVGLYTAMNIMTADRDLILDLFEWLTGARVYHMFSIPGGVRNDLPDGFVERLYKVLDHLEKRLIEYDKLLFENPIIHKRLKGLGYVSKEDAVKYGLTGPNLRASGNPYDVRVDDPYAAYPYLDVRVITQE----------GGDALTRAIQIRLEFEETINLIRRALKTMP--EGEIRLNLGNLSALKVPKGEAYAKVESSKGEFGYYVVSDGGMKPYRVAVRGPSLPAGLLLAQKHLPKMKIDDVAAWMASLAICPPDIDK
'Thermobrachium celere WP_018663227.1'                   -MDAPSYTLSKIAERDNLAVYELFFGPNHPGMHGNFGYVLEMIGTEIVKVRPNAGHLHRGFEKLMEQKLWVQNIALVPRICVVDPDPNEVAYCTAIEKIMGVDIPDRAKFIRTITLEMSRLTSFLMGMGALGAALGLYTPMYIMMADRDLILDLFEWLTGARIYHIFNIPGGVRNDLPEGWVERLNEVLDHLEKRLIEYDKLVFENPIIHKRLKGLGYISKEEAIRTGITGPNLRASGAAYDVRVDDPYAAYPYLDVKVITQD----------GGDALTRAVQVRLEFEETIKLIRQALKEMP--DGDVRLNLGNLSMLKVPKGEAYAKVESSKGEFGYYVVSDGGLKPYRVGVRGPSLPAGLLYAQKHLPKMKIDDVAAWMASLAICPPDIDK
;
END;

[ The following blocks are output data for analysis step 16719 ]
BEGIN TREES;
      TITLE MbxL_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16719;
      TREE HyfI_ML = [&R] (((((Thermoanaerobacter_ethanolicus_EGD52031.1:1.0E-6,'Thermoanaerobacter wiegelii YP_004818843.1':1.0E-6)0.0000:1.0E-6,Thermoanaerobacter_thermohydrosulfuricus_EMT39651.1:1.0E-6)0.8940:0.009189,(Thermoanaerobacter_siderophilus_EIW00258.1:1.0E-6,'Caldanaerobacter subterraneus yonseiensis_ERM91259.1':0.002783)0.8770:0.007625)0.8260:0.023206,('Thermobrachium celere WP_018663227.1':0.052001,'Caloramator australicus WP_008908962.1':0.038832)0.9280:0.039039)1.0000:0.407479,(Beggiatoa_sp._EDN67260.1:0.43911,('Aciduliprofundum sp. YP_007246715.1':0.081739,'Aciduliprofundum boonei YP_003482748.1':0.086651)0.9990:0.339037)1.0000:0.059409)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89882]


END;