#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 22:45 GMT

TreeBASE (cc) 1994-2008

Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16720 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16720;
        DIMENSIONS NTAX=9;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91257.1'
            Caloramator_australicus_CCJ33695.1
            Thermoanaerobacter_ethanolicus_EGD52034.1
            Thermoanaerobacter_siderophilus_EIW00255.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39674.1
            'Thermoanaerobacter wiegelii YP_004818840.1'
            'Thermobrachium celere WP_018663232.1'
            'Thermosipho africanus WP_004102514.1'
            'Thermosipho africanus YP_002335465.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32946]

	TITLE MbxM_alignment;
	LINK TAXA = TaxaForAnalysisStep16720;
	DIMENSIONS NCHAR=302;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300  ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
'Caldanaerobacter subterraneus yonseiensis_ERM91257.1'   ----MIAAIRVFGYSLFAIFIGLLFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFAKKSITHNFVMDLGMIMSLAGLLSTMLFVPIAGHMAIKSSSNLILIIYLMAIGHLGMAMAAAASGNPNATIGVSRALTMMLGYEIPFFTVMLGLIIFNGTSSLELIAQSQAGGLLNWNMVKFPLGFLAAEIALQAIMGEKPFDAMVAPAEIASGPMVELGGKYLGLAFLTHAVSIFVETGIMVNLFMGGASNVFTFVLKQFEIYLITVLIEAVFPRFRIEQAVKFLWTVPMSIAVVQLAIILL----
Caloramator_australicus_CCJ33695.1                       ----MIEILRVFLFGFFAIFIGLFFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFSRKSITHNFVMDLGMVMSLAGLVATMLFVPIAGHTAIKTSSNLIVIMYLMAIGYLGMAMAVAASGNPNATIGVSRALTMMLGYEVPFFTVMLGLIIINGTSSLELIANSQAGSILNWNMIKFPLGFIAAEIALQAMMGEKPFDAMIAPAEIASGPMVELSGKYLGLAFLTHAVSIFVETAIIVNLFMGGASNIFTFVLKQFEIYLITVIIEAVFPRFKIEQAVKFLWTVPMSIALLQLVLIVF----
Thermoanaerobacter_ethanolicus_EGD52034.1                ----MIAAIRVFGYSLFAIFIGLLFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFARKSITHNFVMDLGMIMSLAGLLSTMLFVPVAGHMAIKSSSNLILIIYLMAIGHLGMAMAASASGNPNATIGVSRALTMMLGYEIPFFTVMLGLIIFNGTSSLELIAQSQAGGLLNWNMVKFPLGFLAAEIALQAIMGEKPFDAMVAPAEIASGPMVELGGKYLGLAFLTHAVSIFVETGIMVNLFMGGASNVFTFVLKQFEIYLITVLIEAVFPRFRIEQAVKFLWTVPMSIAVVQLAIILL----
Thermoanaerobacter_siderophilus_EIW00255.1               ----MIAAIRVFGYSLFAIFIGLLFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFARKSITHNFVMDLGMIMSLAGLLSTMLFVPVAGHMAIKSSSNLILIIYLMAIGHLGMAMAASASGNPNATIGVSRALTMMLGYEIPFFTVMLGLIIFNGTSSLELIAQSQAGGLLNWNMVKFPLGFLAAEIALQAIMGEKPFDAMVAPAEIASGPMVELGGKYLGLAFLTHAVSIFVETGIMVNLFMGGASNVFTFVLKQFEIYLITVLIEAVFPRFRIEQAVKFLWTVPMSIAVVQLAIILL----
Thermoanaerobacter_thermohydrosulfuricus_EMT39674.1      ----MIAAIRVFGYSLFAIFIGLLFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFARKSITHNFVMDLGMIMSLAGLLSTMLFVPVAGHMAIKTSSNLILIIYLMAIGHLGMAMAASASGNPNATIGVSRALTMMLGYEIPFFTVMLGLIIFNGTSSLELIAQSQAGGILNWNMVKFPLGFLAAEIALQAIMGEKPFDAMVAPAEIASGPMVELGGKYLGLAFLTHAVSIFVETGIMVNLFMGGASNVFTFVLKQFEIYLITILIEAVFPRFRIEQAVKFLWTVPMSIAVVQLAIILL----
'Thermoanaerobacter wiegelii YP_004818840.1'             ----MIAAIRVFGYSLFAIFIGLLFMGIGRKIIARIQLRLGPPFYQAFLDVGKLFARKSITHNFVMDLGMIMSLAGLLSTMLFVPVAGHMAIKTSSNLILIIYLMAIGHLGMAMAASASGNPNATIGVSRALTMMLGYEIPFFTVMLGLIIFNGTSSLELIAQSQAGGILNWNMVKFPLGFLAAEIALQAIMGEKPFDAMVAPAEIASGPMVELGGKYLGLAFLTHAVSIFVETGIMVNLFMGGASNVFTFVLKQFEIYLITVLIEAVFPRFRIEQAVKFLWTVPMSIAVVQLAIILL----
'Thermobrachium celere WP_018663232.1'                   ----MMAVLRVFLFGIFAIFIGLLFMGIGRKVIARIQLRYGPPFYQAFLDVGKLFARKSITHNFVMDLGMVMALGGLLATMLFVPIAGHVAVKTSTNLIVIMYLMAIGYLGMAMAVAASGNPNATIGVSRALTMMLGYEVPFFTVILGLIIVNGTSSLELISQSQAGSILNWNMIKFPLAFIAAEIALQAMMGEKPFDAMIAPAEIASGPMVELSGKYLGLAFLTHAVSIFVETAIIVNLFMGGASNIFTFVLKQFEIYLITIFIEAVFPRFKIEQAVKFLWTVPIGIAVLQLLLILL----
'Thermosipho africanus WP_004102514.1'                   ---MINTVLKVAAVLFTGFFVGLTLEGVARKITARIQRRYGPPWYQNFIDLFKTLSKHGITHGWIFDFGVLMALGGTIATLAFVPLGNLVAFPGLDNVFIILYLFTVGALGMAMGMVGSGNPNASIGVARALTQMLGYEIPYLVVLSGVMFYYKTSSVSGLMNAQADG---WTLIKMPIGAIIAFVSLMGMLGKKPFDTPIAPAEIASGPMVEVSSKYMGLLMLMHTFSVFVEIAMFVNIFL-GVSNYFTFLLKFVVVWIIATMISAVLPRFRIEQVVKFYWSVPLSLAFVQVLFVLLGWVF
'Thermosipho africanus YP_002335465.1'                   ---MINTILKVMAVLFTGFFVGLTLEGVARKVIARIQRRYGPPWYQNFIDLFKTFSKHGITHGWIFDFGVLMALGGTIATLAFVPLGNLIAFPGLDNVFIILYLWAIGALGMAMGMVGSGNPNASIGVARALTQMMGYEVPYLVVLAGVMFYYKTSSVSALMYSQADK---WTLLKMPIGGIIAFVSLMGMLGKKPFDTPIAPAEIASGPMVELSAKYMGLLMLMHTFSIFVEISMFVNIFL-GISNYFTFLIKFTIVWILATMISAVLPRFRIEQVVKFYWKVPLSLAFVQVLFVLLGWVF
;
END;

[ The following blocks are output data for analysis step 16720 ]
BEGIN TREES;
      TITLE MbxM_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16720;
      TREE MbxM_ML = [&R] ((((((Thermoanaerobacter_siderophilus_EIW00255.1:1.0E-6,Thermoanaerobacter_ethanolicus_EGD52034.1:1.0E-6)0.0000:1.0E-6,(Thermoanaerobacter_thermohydrosulfuricus_EMT39674.1:0.003467,'Thermoanaerobacter wiegelii YP_004818840.1':1.0E-6)0.7510:0.003468)0.3250:0.007018,'Caldanaerobacter subterraneus yonseiensis_ERM91257.1':0.003404)1.0000:0.110872,Caloramator_australicus_CCJ33695.1:0.038538)0.5820:0.027712,'Thermobrachium celere WP_018663232.1':0.035318)1.0000:0.3922795,('Thermosipho africanus WP_004102514.1':0.055866,'Thermosipho africanus YP_002335465.1':0.051464)1.0000:0.4889505)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89883]


END;