#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 23:00 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16721 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16721;
        DIMENSIONS NTAX=7;
        TAXLABELS
            'Caldanaerobacter subterraneus yonseiensis_ERM91260.1'
            'Caloramator australicus WP_008908963.1'
            Thermoanaerobacter_ethanolicus_EGD52030.1
            Thermoanaerobacter_siderophilus_EIW00259.1
            Thermoanaerobacter_thermohydrosulfuricus_EMT39655.1
            'Thermoanaerobacter wiegelii YP_004818844.1'
            'Thermobrachium celere WP_018663225.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32947]

	TITLE MbxN_alignment;
	LINK TAXA = TaxaForAnalysisStep16721;
	DIMENSIONS NCHAR=162;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160  ]
[                                                                 .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
'Caldanaerobacter subterraneus yonseiensis_ERM91260.1'   MALGDKSVYSPLTNLKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLTKCIGCGMCQRICPFDAIEMKVVGENEQGRAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHYIYKVKTVKSMSAKEEVEHIKQKFKLMPDESLGDDIGYNTGKTKKILG
'Caloramator australicus WP_008908963.1'                 MALGDKSVYSPLTTLKNLFKRPMTIKYPKEILRVFPKEGVSPNYRGLHTNDLEKCVGCAACQRICPFDAIEMKIIGQNEQGRAIKKPVVDYGRCSFCAFCVDVCPTNSLKMSRHYIYKIKTVKSLSAKDEVEFVKDKFRIMPDEKLGDDIGYNTGKAKKVLG
Thermoanaerobacter_ethanolicus_EGD52030.1                MSLGDKSVYSPLTNLKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKVIGENEQGRAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHYIYKVKTVKSMSAKEEVEHIKQKFKLLPDESLGDDIGYNTGKTKKILG
Thermoanaerobacter_siderophilus_EIW00259.1               MALGDKSVYSPLTNLKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLTKCIGCGMCQRICPFDAIEMKVVSENEQGRAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHYIYKVKTVKSMSAKEEVEHIKQKFKLMPDESLGDDIGYNTGKTKKILG
Thermoanaerobacter_thermohydrosulfuricus_EMT39655.1      MSLGDKSVYSPLTNLKNLFKKPITVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKVIGENEQGRAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHYIYKVKTVKSMSAKEEVEHIKQKFKLMPDESLGDDIGYNTGKAKKILG
'Thermoanaerobacter wiegelii YP_004818844.1'             MSLGDKSVYSPLTNLKNLFKKPMTVKYPKEILKVFPKDGVSPIYRGLHTNDLNKCIGCGMCQRICPFDAIEMKVIGENEQGRAIKKPVVDYGRCSFCGFCVDVCPTNSLKMSRHYIYKVKTVKSMSAKEEVEHIKQKFKLMPDESLGDDIGYNTGKAKKILG
'Thermobrachium celere WP_018663225.1'                   MALGDKSVYSPLTTLKNLFRRPVTIKYPKQILRVFPKDGVSPTYRGLHTNDLDKCVGCAACKRICPFDAITMKVVGKNEQGREIKKPVVDYGRCSFCAFCVDVCPTNSLKMSRHYIYKIKTVMSMSAKDEVEYVKEKFKIMPDESLGDDIGYNTGKSKKVLG
;
END;

[ The following blocks are output data for analysis step 16721 ]
BEGIN TREES;
      TITLE MbxN_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16721;
      TREE MbxN_ML = [&R] (((Thermoanaerobacter_thermohydrosulfuricus_EMT39655.1:0.006109,'Thermoanaerobacter wiegelii YP_004818844.1':1.0E-6)0.0000:1.0E-6,(Thermoanaerobacter_ethanolicus_EGD52030.1:0.006137,(Thermoanaerobacter_siderophilus_EIW00259.1:0.006123,'Caldanaerobacter subterraneus yonseiensis_ERM91260.1':1.0E-6)0.9340:0.018598)0.3980:0.006119)1.0000:0.0861345,('Thermobrachium celere WP_018663225.1':0.07494,'Caloramator australicus WP_008908963.1':0.055627)1.0000:0.0420345)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89884]


END;