#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 17, 2025; 22:45 GMT

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Study reference:
Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015.
Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter
subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase
diversity. BMC Genomics, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S18113]

[ The following blocks are input data for analysis step 16722 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep16722;
        DIMENSIONS NTAX=15;
        TAXLABELS
            'Caldanaerobacter subterraneus pacificus_EEB76411.1'
            'Caldanaerobacter subterraneus tengcongensis_NP_621744.1'
            'Caldanaerobacter subterraneus yonseiensis_ERM91216.1'
            Dehalobacter_restrictus_AHF10737.1
            'Dehalobacter sp. WP_019226050.1'
            'Dehalobacter sp. WP_020491764.1'
            'Dehalobacter sp. YP_006910695.1'
            'Thermoanaerobacter brockii YP_004187137.1'
            Thermoanaerobacter_ethanolicus_EGD52043.1
            'Thermoanaerobacter pseudethanolicus YP_001666161.1'
            Thermoanaerobacter_siderophilus_EIW00246.1
            'Thermoanaerobacter sp. X513 YP_003902998.1'
            'Thermoanaerobacter sp. X514 YP_001661689.1'
            Thermoanaerobacter_thermohydrosulfuricus_EMT39687.1
            'Thermoanaerobacter wiegelii YP_004818831.1'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32948]

	TITLE 11495_alignment;
	LINK TAXA = TaxaForAnalysisStep16722;
	DIMENSIONS NCHAR=250;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                                                   10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250]
[                                                                    .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Caldanaerobacter subterraneus pacificus_EEB76411.1'        ------MPKESYSILLAGDSISRGVVLDREKNKYVITERNYVNLVKGRIKGTIKNISRFGATILKGIEMIKKEFVREKPDVVVLEFGGNDCDFDWEQVAKNPEMEHFPKTDYQLFIQKLKEIIEFLKEFDVVPVLMTLPPLDADRYLKWISKASKEMEENILRWLGSVTKIYWWQERYNSAIRIIAEETKTLVIDVRSAFLYYPDFRNFLCEDGIHPNEEGHKIMAHKIGEYLKKHYPFLLKI-------
'Caldanaerobacter subterraneus tengcongensis_NP_621744.1'   ------MPKESYSILLAGDSISRGVVLDREKNKYVITERNYVNLVKGRIKGTIKNISRFGATILKGIEMIKKEFVREKPDVVVLEFGGNDCDFDWEQVAKNPEMEHFPKTDYHLFIQKLKEIIEFLKEFEVVPVLMTLPPLDADRYLKWISKASKEVEENILRWLGSVTKIYWWQERYNSAIRVIAEETKTLVIDVRSAFLYYPDFRNFLCEDGIHPNEEGHKIMAHKIGEYLKKHYPFLLKI-------
'Caldanaerobacter subterraneus yonseiensis_ERM91216.1'      --MASVTLQNYYDIVVAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFNWEEIAKNPHAEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNERGHKIIAHKVYEYLQRNYTHLLKE-------
Dehalobacter_restrictus_AHF10737.1                          -------MKDNYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLNRDVSKTCPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKSILIWLGSVTKIYWWQERYNSMIVNIAEETRTRWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADTLS
'Dehalobacter sp. WP_019226050.1'                           MDNNQPELKENYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLHRDVSKTRPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETRTRWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Dehalobacter sp. WP_020491764.1'                           MDNNQPELKDNYTFLIVGDSISKGVIYNEDQGKYSLLDKNYVSLVQNSLKGIVYNAAKFGNTIKKGIERLHRDVSKTRPDIVLIEFGGNDCDFNWMQIASDPMAEHEPKTDFNVFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETKTKWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Dehalobacter sp. YP_006910695.1'                           MDNNQSELKENYTFLIVGDSISKGVIYNEDQGKYSLLDRNYVSLVQNSLKGMVYNAAKFGNTIKKGIERLNRDVSKTRPDIVLIEFGGNDCDFDWMQIASDPMAEHEPKTDFNAFGKMLTDTIISLKNNNIIPVLMTLPPLDADRYFKWISKNSNEIGKNILIWLGSVTKIYWWQERYNSMIVNIAEETKTKWIDVRGAFLKTPDFTQLLCIDGIHPNEDGHKVIAQKVTEYLRQNYNFLLKDSSADSLS
'Thermoanaerobacter brockii YP_004187137.1'                 --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_ethanolicus_EGD52043.1                   --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLNYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter pseudethanolicus YP_001666161.1'        --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_siderophilus_EIW00246.1                  --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter sp. X513 YP_003902998.1'                --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
'Thermoanaerobacter sp. X514 YP_001661689.1'                --MAGMTLENYYDIVVAGDSISKGVVYSKEKSKYVISDVNYVNLLKDNIKGTVKNIAKFGNTLLKGIDILKRYLLKDKPDIVLIEFGGNDCDFDWEEIAKNPYDEHSPKTDFYIFKEKLKELIKSLEDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICTDGIHPNEKGHKIIAHKIYEYLQRNYAYLLKE-------
Thermoanaerobacter_thermohydrosulfuricus_EMT39687.1         --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
'Thermoanaerobacter wiegelii YP_004818831.1'                --MASVTLQNYYDIVIAGDSISRGVVYSEEKNKYVISDVNYVNLLKNNIKGTVKNIAKFGNTLLKGIDTLKRYLSKDKPDIVVIEFGGNDCDFDWEEIAKNPYDEHRPKTDFYIFKEKLKELIKSLDDANIIPVLMTLPPLDADRYFKWISKNSEEMGKNILKWLGSVTKIYWWQEKYNSAILSIAEETKTRLIDIRSAFLDYPDFRQFICADGIHPNEKGHKIIAHKIYEYLQRNYTYLLKE-------
;
END;

[ The following blocks are output data for analysis step 16722 ]
BEGIN TREES;
      TITLE 11495_phylogeny;
      LINK TAXA = TaxaForAnalysisStep16722;
      TREE 11495 = [&R] ((('Dehalobacter sp. WP_020491764.1':0.016263,'Dehalobacter sp. YP_006910695.1':0.008132)0.6010:0.003668,(Dehalobacter_restrictus_AHF10737.1:0.020312,'Dehalobacter sp. WP_019226050.1':1.0E-6)0.6910:0.004363)1.0000:0.400468,((((((Thermoanaerobacter_siderophilus_EIW00246.1:1.0E-6,'Thermoanaerobacter wiegelii YP_004818831.1':1.0E-6)0.0000:1.0E-6,Thermoanaerobacter_thermohydrosulfuricus_EMT39687.1:1.0E-6)0.0000:1.0E-6,Thermoanaerobacter_ethanolicus_EGD52043.1:0.004079)0.0000:1.0E-6,('Thermoanaerobacter brockii YP_004187137.1':1.0E-6,('Thermoanaerobacter sp. X513 YP_003902998.1':1.0E-6,('Thermoanaerobacter sp. X514 YP_001661689.1':1.0E-6,'Thermoanaerobacter pseudethanolicus YP_001666161.1':1.0E-6)0.0000:1.0E-6)0.0000:1.0E-6)1.0000:0.056128)0.2500:0.006937,'Caldanaerobacter subterraneus yonseiensis_ERM91216.1':0.022071)0.9040:0.119509,('Caldanaerobacter subterraneus tengcongensis_NP_621744.1':0.012025,'Caldanaerobacter subterraneus pacificus_EEB76411.1':0.004787)1.0000:0.383125)1.0000:0.029993)root;
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89885]


END;