#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 14, 2024; 15:43 GMT TreeBASE (cc) 1994-2008 Study reference: Sant'anna F.H., Lebedinsky A.V., Sokolova T.G., Robb F.T., & Gonzalez J.M. 2015. Analysis of three genomes within the thermophilic bacterial species Caldanaerobacter subterraneus with a focus on carbon monoxide dehydrogenase evolution and hydrolase diversity. BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18113] [ The following blocks are input data for analysis step 16749 ] BEGIN TAXA; TITLE TaxaForAnalysisStep16749; DIMENSIONS NTAX=13; TAXLABELS 'Caldanaerobacter subterraneus pacificus_CDSM653_0109' 'Caldanaerobacter subterraneus tengcongensis_3VTH' 'Caldanaerobacter subterraneus tengcongensis_NP_621831.1' 'Thermoanaerobacter WP_004399983.1' 'Thermoanaerobacter ethanolicus WP_003868945.1' 'Thermoanaerobacter italicus YP_003477422.1' 'Thermoanaerobacter mathranii YP_003677318.1' 'Thermoanaerobacter siderophilus WP_006569907.1' 'Thermoanaerobacter wiegelii YP_004818936.1' 'Thermoanaerobacterium saccharolyticum YP_006391306.1' 'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1' 'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1' 'Thermoanaerobacterium xylanolyticum YP_004469849.1' ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M32983] TITLE HypF_alignment; LINK TAXA = TaxaForAnalysisStep16749; DIMENSIONS NCHAR=992; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] 'Caldanaerobacter subterraneus pacificus_CDSM653_0109' -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----GYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEG------------------- 'Caldanaerobacter subterraneus tengcongensis_3VTH' -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----RYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEGSAWSHPQFEK--------- 'Caldanaerobacter subterraneus tengcongensis_NP_621831.1' -------------------------------------MVRGRVPQIQARQINIFGIVQGVGFRPFVFNIAQKYNLKGIVYNNSSGLYIEVEGEEKDIEAFIREIKENPPSLSVIDEIQVREVE---VK-EY--KDFKIVGS--KEDGGFVPVSPDMGVCEDCLRELKDPKDRRYRYPFINCTNCGPRFSIIEDIPYDRAKTSMKVFPMCEKCSREYHDPHDRRFHAQPVACFDCGPSLSF--VGEGCFD---------------------DEIKCVAKALKEGKIVAIKGIGGFHLAVNALDDEAVATLRRRKKRYGKPFAVMMRDVEEVKKYCIVSPEEERLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-IADDLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNA-GAE---------------------RIIRRARGYAPQPILL----K-KE----V-----KASILAVGGFYKNTFCMTKGHYAFISHHIGDLDNEKAFNYYIEQIERYKKLFRVDPEVVAHDMHKGYLSTQYAKS----LD-LPK---IEVQHHHAHIASCMAEH-------NL--DEKVIGIAYDGTGYGTDGNVWGAEILVCDLK-SFERIAHLKYKPLPGNELAIKKIYRTALGFIF-------DNISFY------KNFVEQVDSRELDIILKQIDRKINTAYVSSMGRFFDAVAALIGVRK--EVLFEGQAAMELESLMAE-----SEEY---------------YEYEI-----LKED----RYVIDPELILRQIYEDYMKGF-EKSYISAKFHNTVVNFTYDLANLIRKETGINKVVLSGGSFQNRYLLRRLIEKLSLSGFEVYSNSKVPCNDGGISLGQAVIANK--ILEG------------------- 'Thermoanaerobacter WP_004399983.1' -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGEEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCMTHGHYAFISHHIGDLDNEQAFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-DRKIIATKFHNSIVEFSHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG------------------- 'Thermoanaerobacter ethanolicus WP_003868945.1' -------------------------------------MVRRRVSQIQARQINIYGIVQGVGFRPFVFNIAQKYNLKGMIYNNSSGVYIEVEGEKENVECFIKEIKENPPSLAVIDEIKIKESE---VK-NY--REFKIMES--KEDDGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCGKCEQEYNNPNDRRFHAQPVACFDCGPKLEF--VGDNCQE---------------------DEIKCAVDALKRGKILAIKGIGGFHLAVNALDDEAVSTLRSRKKRYGKPFAVMMKDIKQVKEYCILSEEEKKLLLSQRKPIVLLK-------------------KK------GEK--------LARG-VADGLDTLGVMLPYAPIHYLLMEEI-------D-FP--------IVMTSGNVSEEPLCKDNEEALEKLKDIADVFLLNNRDIVNKIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPLLL----K-KD----V-----KANVLAVGGFYKNTFCMTRGQYAFISHHIGDLDNEKTFEYYKEQIERYKGLFRVTPQVIAHDMHKGYLSTQYALS----CD-LPR---IEVQHHHAHIASCMAEY-------NI--TDKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLKYKPLPGGELAIRKIYRVALGFIS-------EDINFY------KDFVERFDSREVDLILKQIEKRINTPYVSSMGRLFDAAASLLGVRD--QVLFEGQGAMELESLIIE-----NDDF---------------YDFDV-----YRDE----EYIINPEMILHQLYEDYKNGI-DKRIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAYSNSKVPCNDGGISLGQAVIANK--KLEG------------------- 'Thermoanaerobacter italicus YP_003477422.1' -------------------------------------MVRGRISKIQAKQIEIAGIVQGVGFRPFVFTLAKKYHLGGIVYNTSSGVYIEVEGGEENINNFLKELKDNPPPLAVIDEIEVKDLG---IR-GY--EDFKIISS--KEDGGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRSKTSMKVFPMCKKCEKEYNDTNNRRFHAQPVACFDCGPKLEF--VGGSCKE---------------------DEIKCAVAALKKGKIVAIKGIGGFHLAVNALDEKAVSNLRIRKERYGKPFAVMMKDIKQVEEYCIVGEEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMEEI-------N-FP--------IVMTSGNVSEEPLCKDNKEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCLTKGHYAFVSHHIGDLDNEKTFEYYKDQIERYKRLFRVTPQVIAYDMHKGYLSTQYALT----LD-LPR---IEVQHHHAHIASCMAEY-------NL--EEKVIGIAYDGTGYGADGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------RDFVGKFDSKEVDLILKQIEKKINTPYVSSMGRFFDAAVSLIGIRD--QVLFEGQGAMELESLIVE-----DNDF---------------YDFEV-----YRDE----EYIIDPEVILRQLYEDYKNGV-DRRVIATKFHNSIVEFTCYLALKLRKEFGINKVVLSGGSFQNRYLLKKLLTRFTASGFEAYSNSKVPCNDGGISLGQAVIAGK--KLEG------------------- 'Thermoanaerobacter mathranii YP_003677318.1' -------------------------------------MVRGRISKIQAKQIEIAGIVQGVGFRPFVFTLAKKYHLGGIVYNTSSGVYIEVEGGEENINNFLKELKDNPPPLAVIDEIEVKDLG---IR-GY--EDFKIISS--KEDGGFVPVSPDMGVCDDCLKEMNDPNDRRYRYPFINCTNCGPRFSIIEDIPYDRSKTSMKVFPMCEKCEKEYNDPNNRRFHAQPVACFDCGPKLEF--VGGSCKE---------------------DEIKCAAAALKKGKIVAIKGIGGFHLAVNALDEKAVSSLRIRKERYGKPFAVMMKDIKQVEEYCIVGEEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMEEI-------N-FP--------IVMTSGNVSEEPLCKDNKEALEKLKDIADVFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCLTKGHYAFVSHHIGDLDNEKTFEYYKEQIERYKRLFRVTPQVIAHDMHKGYLSTQYALT----LD-LPS---IEVQHHHAHIASCMAEY-------NL--EEKVIGIAYDGTGYGVDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------RDFVGKFDSKEVDLILKQIEKKINTPYVSSMGRFFDAAVSLIGIRD--QVLFEGQGAMELESLIVE-----DNDF---------------YDFEV-----YRDE----EYIIDPEVILRQLYEDYKNGV-DRRVIATKFHNSIVEFTFYLALKLRKEFGINKVVLSGGSFQNRYLLKKLLTRLTASGFEAYSNSKVPCNDGGISLGQAVIAGK--KLEG------------------- 'Thermoanaerobacter siderophilus WP_006569907.1' -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGEEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCMTRGQYAFISHHIGDLDNEKTFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-NRKIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG------------------- 'Thermoanaerobacter wiegelii YP_004818936.1' -------------------------------------MVRRRVSKIQAKQIDIFGIVQGVGFRPFVFTTAQKYNLRGIVYNTSSGVYIEVEGQEGDINSFIKELKDNPPPLAVIDEIKVKDLE---IK-NY--EDFKIISS--QENDGFVPVSPDMGVCEDCLREMNDPNDRRYKYPFINCTNCGPRFSIIEDIPYDRPKTSMKVFPMCEKCEKEYNDPHDRRFHAQPVACFDCGPKLEF--VGGNCEE---------------------DEIKCVADALKRGKIVAIKGIGGFHLAVNALSDEAVFTLRSRKKRYGKPFAVMMKDINQVEKYCFVSDEEKKLLLSQRRPIVLLK-------------------KK------GEK--------LAKG-VADGLDTLGVMLPYAPIHYLLMDQI-------D-FP--------IVMTSGNVSEEPICKDNEEALEKLKDIADAFLLNNRDIVNRIDDSVTS---FNG-GAE---------------------RIIRRARGYAPQPILL----K-KD----A-----KVNVLAVGGFYKNTFCITHGHYAFISHHIGDLDNEQAFEYYKEQIERYKRLFRVNPEVIAHDMHKGYLSTQYALS----CD-LPR---VEVQHHHAHIVSCMAEY-------NL--EEKVIGIAYDGTGYGTDGNIWGAEFLICDLK-DFLRVGHLEYKPLPGGELAIKKIYRTALGFIS-------KDINFY------KDFVEKFDSKEIDIILKQIERKINTPYVSSMGRFFDAAASLLGLRD--QVLFEGQGAMELESLIVE-----NDDF---------------YDFEV-----YRDR----EYIINPEVILHQLYEDYKKGI-DRKIIATKFHNSIVEFTHYLALELRKEFGINKVVLSGGSFQNRYLLKKLLAKLTASGFEAFSNSKVPCNDGGISLGQAVIANK--KLEG------------------- 'Thermoanaerobacterium saccharolyticum YP_006391306.1' -------------------------------------MAEKEIQRIRARQINIKGIVQGVGFRPFVYNLALKHSLSGIVYNTSSGLYINVEGYEDDIDAFLSELKENPPKLSKIDEVFVEDCD---VV-GY--KGFSIKSS--KADEGFVPISPDMGVCDECVSEMMDEKNRRYNYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCKLCKDEYENPLDRRFHAQPVACYDCGPSLKY--VGESTNF---------------------DPIMAIAEDLRNGKIVAIKGIGGFHLAVNALSKDAVLRLRERKNRYGKPLALMMKDVEDVKRYCHVSPEEIELLNSQRRPIVLLK-------------------KK-Y----E----------FEG--VSDGLDSVGVMLPYAPIHYLLFKYI-------D-FP--------VVMTSGNISEEPLCKDNDEALKRLKGIADSFLLNDRDIVNRIDDTVTS---WKG-KSE---------------------RVIRRSRGYAPEPMVF----K-MD----------FKPILAVGGYYKNTFCLTKGNYVFLSHHIGDLDNSKTYMYYVEEIKKYMRLFKVQPQFVACDMHQGYLSTQFAKT----LG-LPV---IYTQHHHAHIVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHIKYNPLPGGELAIKRIYRTAIGFIN-------EDMIFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIGVKD--TVIYEGQAAMELESIIEK-----DQSY---------------YDFTV-----SSDD----QYVVDTSDILRQVYSDYKKGV-NKGIISARFHNTIVEFTAYVALKLGEKYNIDKVVLSGGSFQNKYLLENIIDRLSKEGFSVYSNSKIPCNDGGISLGQAVIANY--RMEV------------------- 'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1' -------------------------------------MAERDLQSIYAKQINIKGIVQGVGFRPFVYNLAQKYNLHGIVFNTSSGLYIKIEGNDKNINSFIYELKANPPKLSKIDEVLIESCD---VE-GY--RDFSIKLS--QKDDGFVPISPDMGVCDDCVNEMMDENNRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCDLCKGEYTNPLDRRFHAQPVACFDCGPSLNY--VGPNAND---------------------DPIKAVAEDLRDGKIVAIKGIGGYHLAVNALSRDAVFRLRERKNRYGKPLALMMKDIDCVKKFCYLSDDEMELLNSQRRPIVLLK-------------------KK-H---------------KFEG-ISDGLDSVGVMLPYTPIHYLLFEFI-------D-FP--------IVMTSGNISEEPLCKDNEEALKRLKGIADSFLLNNRDIVNRIDDTVTS---YKA-KRE---------------------RVIRRARGYAPQPILF----K-DN----------LKSILAVGGYYKNTFCLTKGNYAFLSHHIGDLDNSKTYMYYMNEIKKYIKLFKAEPKYVACDMHPGYLSTQFAKS----LD-LPV---IYTQHHHAHIVSCMAEY-------GI--SDKVIGFAYDGTGYGPDGNVWGAEFLIADLK-DFVRAGHLKYNFLPGGELAIKKIYRTSIGFIK-------DDMSFY------GDYLKRFDPKEIEIINMQMDRKMNAPLVSSIGRFFDAVTSLIGLED--VVKYEGQAAMELESIIES-----DLSH---------------YDYSI-----SNVD----GYIVDTSNILRQVYSDYLKGI-SKGIISARFHNTIVEFTVDIALRLRENYKINKVVLSGGSFQNKYLLENITDKLLKEGFSVYSNSMVPCNDGGIALGQAVIANY--KLEV------------------- 'Thermoanaerobacterium thermosaccharolyticum YP_007297556.1' -------------------------------------MAERDLQSIYAKQINIKGIVQGVGFRPFVYNLAQKYNLHGIVFNTSSGLYIKIEGNDKNINSFIYELKANPPKLSKIDEVLIESCD---VE-GY--RDFSIKLS--QKDDGFVPISPDMGVCDDCVNEMMDENNRRYRYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCDLCKGEYTNPLDRRFHAQPVACFDCGPSLNY--VGPNAND---------------------DPIKAVAEDLRNGKIVAIKGIGGYHLAVNALSHDAVFRLRERKNRYGKPLALMMKDIDCVKKFCYLSDDEMELLNSQRRPIVLLK-------------------KK-Y----K----------FEG--ISDGLNSVGVMLPYTPIHYLLFEFI-------D-FP--------IVMTSGNISEEPLCKDNEEALKRLKGIADSFLLNNRDIVNRIDDTVTS---YKA-KRE---------------------RVIRRARGYAPQPILF----K-DK----------LKSILAVGGYYKNTFCLTKGNYAFLSHHIGDLDNSKTYMYYMNEIKKYIKLFKAEPKYVACDMHPGYLSTQFAKS----LD-LPV---IYTQHHHAHIVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHVKYNPLPGGELAIKRIYRTAIGFIN-------EDMIFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIDIED--TVHYEGQAAMELESIIES-----DSSY---------------YSFTV-----SSGD----EYVVDTSDILMQVYSDYRKGV-NKGIISARFHNTIVEFTVDIALRLRENYKIDKVVLSGGSFQNKYLLENITDKLLKEGFSVYSNSMVPCNDGGIALGQAVIANY--KLEV------------------- 'Thermoanaerobacterium xylanolyticum YP_004469849.1' -------------------------------------MAEREIRRIRARQINIKGIVQGVGFRPFVYNLALRYSLSGIVYNTSSGVSINVEGYEDDIDAFLSELKENPPKLSKIDEISIEDCD---VV-GY--KGFSIKSS--KADEGFVPISPDMGVCDECVSEMMDEKNRRYNYPFINCTNCGPRFSIIEDIPYDRPKTSMKKFPMCKLCNDEYENPLDRRFHAQPVACYDCGPSLKY--VGESTNI---------------------DPIMAVAEDLRKGKIVAIKGIGGFHLAVNALSHEAVLRLRDRKNRYGKPLALMMKDVEDVKRHCHVSPEEIELLNSQRRPIVLLK-------------------KK-Y----E----------FEG--VSDGLDSVGVMLPYAPIHYLLFKYI-------D-FP--------VVMTSGNISEEPLCKDNDEALKRLKDIADSFLLNDRDIVNRIDDTVTS---WKG-KSE---------------------RVIRRSRGYAPEPMVF----K-MD----------FKPILAVGGYYKNTFCLTKGNYAFLSHHIGDLDSSKTYMYYVEEIKKYMRLFKVQPQFVACDMHQGYLSTQFAKT----LG-LPV---IYTQHHHAHVVSCMAEY-------GI--EDKVIGFSYDGTGYGLDGNVWGAEFLIADLK-DFVRAGHVKYNPLPGGELAIKRIYRTAIGFIN-------EDMNFY------KDYLKRFDAKELEIIKAQIDKKINAPLVSSMGRLFDAVASLIGVKD--TVIYEGQAAMELESIIEK-----DQSY---------------YDFTV-----SSDD----QYVVDTSDILRQVYSDYKKGV-SKGIISARFHNTIVEFTAYVALKLGEKYNIDKVVLSGGSFQNKYLLENIIDRLSKEGFLVYSNSKIPCNDGGISLGQAVIANY--RMEV------------------- ; END; [ The following blocks are output data for analysis step 16749 ] BEGIN TREES; TITLE HypF_phylogeny; LINK TAXA = TaxaForAnalysisStep16749; TREE HypF_ML = [&R] ((('Thermoanaerobacterium xylanolyticum YP_004469849.1':0.021996,'Thermoanaerobacterium saccharolyticum YP_006391306.1':0.006469)0.9980:0.077105,('Thermoanaerobacterium thermosaccharolyticum YP_007297556.1':0.006554,'Thermoanaerobacterium thermosaccharolyticum YP_003850798.1':0.051163)0.9950:0.064105)1.0000:0.211489,(((('Thermoanaerobacter mathranii YP_003677318.1':1.0E-6,'Thermoanaerobacter italicus YP_003477422.1':0.011297)1.0000:0.064058,(('Thermoanaerobacter wiegelii YP_004818936.1':0.002771,'Thermoanaerobacter WP_004399983.1':0.001383)0.9100:0.004229,'Thermoanaerobacter siderophilus WP_006569907.1':0.002723)1.0000:0.037698)0.6220:0.018939,'Thermoanaerobacter ethanolicus WP_003868945.1':0.057305)0.9960:0.075843,('Caldanaerobacter subterraneus pacificus_CDSM653_0109':1.0E-6,('Caldanaerobacter subterraneus tengcongensis_NP_621831.1':1.0E-6,'Caldanaerobacter subterraneus tengcongensis_3VTH':1.0E-6)0.0000:1.0E-6)1.0000:0.105206)0.9960:0.101216)root; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr89918] END;