#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 22, 2026; 11:11 GMT TreeBASE (cc) 1994-2008 Study reference: Klich M., Cary J., Beltz S., & Bennett C. 2003. Phylogenetic and Morphological Analysis of Aspergillus ochraceoroseus. Mycologia, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S987] [ The following blocks are input data for analysis step 1696 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1696; DIMENSIONS NTAX=15; TAXLABELS Aspergillus_alliaceus Aspergillus_bombycis Aspergillus_flavus Aspergillus_fumigatus Aspergillus_nidulans Aspergillus_nomius_NRRL13137 Aspergillus_nomius_NRRL25393 Aspergillus_ochraceoroseus Aspergillus_ochraceus Aspergillus_parasiticus Aspergillus_pseudotamarii_NRRL25517 Aspergillus_pseudotamarii_NRRL443 Aspergillus_tamarii_NRRL20818 Aspergillus_tamarii_NRRL25565 Aspergillus_versicolor ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M535] TITLE 5.8S_ITS; LINK TAXA = TaxaForAnalysisStep1696; DIMENSIONS NCHAR=460; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Aspergillus_alliaceus CCCA-ACCTCCCACCCGTGTATACTGTA-CCTTCGTTGCTTCGGCGGG---CCCGCCG--T-CATGGCCGCCGGGG-GGCTTCTGCCCCCGGGCCCGCGCCCGCCGGAGACAC-A---TGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTCACACAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCCTCGTCCCCCCC----------GGGGGACGTGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_bombycis CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG--T-CAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_flavus CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCA--TTCATGGCCGCCGGGG-GCTCTCAGCCCC-GGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_fumigatus TCCA-ACTTCCCACC?GTGTCTATCGTA-CCTT-GTTGCTTCGGCGGG---CCCGC?GTTTCGACGGCCGCCGGGGAGGCTTGCGCCCCCGGGCCCGCGCCCGCCGAAGACCCCAACATGAACGC--TGTTCTGA-AAGTATGCAGTCTGAGT-TGAT---TATCGTAATCAGTTAAAACTTTCAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCC-TCAAGCACGGCTTGTGTGTTGGGCCCCCGTCCCCCTCTCC------CGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCTGCTC Aspergillus_nidulans CCCA-ACCTCCCACCCGTGACTACC-TAACACT-GTTGCTTCGGCGGGGAGCCCCC------------CAGGGGCG-------------------AGC---CGCCGGGGACCACT----GAACTTCATGC-CTGAGAGTGATGCAGTCTGAGCCTGA---ATACAA-A-TCAGTCAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCC-TCAAGCCCGGCTTGTGTGTTGGGTCGTCGTCCCCCCCGG----------GGGACGGGCCCGAAAGGCAGCGGCGGCACCGTGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_nomius_NRRL13137 CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG----CAAGGCCGCCGGGG-GGCATCCGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGA-ACGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCCCCTCCG----GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_nomius_NRRL25393 CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG----CAAGGCCGCCGGGG-GGCATCCGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGA-ACGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCCCCTCCG----GGGGGGGACGGGCCCTAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_ochraceoroseus CCCAGACCTCCCACCCGTGTCTACT-TGACCCT-GTTGCTTCGGCGGG---CTCGCC-----------CGCCGG-A-------------------AGC---CCCCAA----CAC-----GAACCC--TGT-CTGAGAGAGATGCTGTCTGAGTGTGATTGATACCA-A-TCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCCCGGCTTGTGTGTTGGGTCGTCGTCCCTCCCGGTTCGCCCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_ochraceus -CCA-ACT-CCCACCG-TGTATACCGTA-CCTT-GTTGCTTCGGCGAG---CCCGCCCCCTTTTT--CTTTTAGGG--------------GGCACAGCGCTCGCCGGAGACACCAACGTGAACAC--TGT-CTGA-AGTTTTGTCGTCTGAGT-CGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCACCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCACCCCCTGGTATTCCGGGGGGTATGCCTGTCCGAGCGTCATTGCC?CCC-TCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCC---CC------AGGGGGACGGGCCCCAAAGGCA?CGGCGGCACC?CGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_parasiticus CCCA-ACCTCCCACCCGTGTTTACTGTA-CCTTAGTTGCTTCGGCGGG---CCCGCCG--T-CATGGCCGCCGGGG-GCG-TCAGCCCC-GGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_pseudotamarii_NRRL25517 CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCCG--TTTACGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_pseudotamarii_NRRL443 CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCCG--TTTACGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTCC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_tamarii_NRRL20818 CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCC---TTTAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_tamarii_NRRL25565 CCCA-ACCTCCCACCCGTGTTTACTGTAACCTTAGTTGCTTCGGCGGG---CCCGCC---TTTAAGGCCGCCGGGG-GGCATCAGCCCCCGGGCCCGCGCCCGCCGGAGACACCA---CGAACTC--TGT-CTGA-TCTAGTGAAGTCTGAGT-TGATT-GTATCGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAGTGTGAATTGCAGAATTCCGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCATCAAGCACGGCTTGTGTGTTGGGTCGTCGTCCCCTCTTC------GGGGGGGACGGGCCCCAAAGGCAGCGGCGGCACCGCGTCCGATCCTCGAGCGTATGGGGCTTTGTCACCCGCTC Aspergillus_versicolor CCCA-ACCTCCCACCCGTGACTACC-TAACACT-GTTGCTTCGGCGGGGAGCCCTCT-----------CGGGGGCG-------------------AGC---CGCCGGGGACTACT----GAACTTCATGC-CTGAGAGTGATGCAGTCTGAGTCTGA---ATATAA-AATCAGTCAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAACTGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGCATTCCGGGGGACATGCCTGTCCGAGCGTCATTGCTGCCCATCAAG?CCGGCTTGTGTGTTGGGTCGTCGTCCCCCCCGG----------GGGACGGGCCCGAAAGGCAGCGGCGGCACCGTGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 5.8S_ITS) = N: 1-460; CODONPOSSET CodonPositions (CHARACTERS = 5.8S_ITS) = N: 1-460; END; [ The following blocks are output data for analysis step 1696 ] BEGIN TREES; TITLE Tb6472; LINK TAXA = TaxaForAnalysisStep1696; TREE Fig._1_PAUP_4 = [&R] (Aspergillus_tamarii_NRRL20818,(Aspergillus_tamarii_NRRL25565,(Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443,(Aspergillus_flavus,Aspergillus_parasiticus)),(Aspergillus_bombycis,((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL25393),(Aspergillus_alliaceus,(Aspergillus_ochraceus,(Aspergillus_fumigatus,((Aspergillus_nidulans,Aspergillus_versicolor),Aspergillus_ochraceoroseus)))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4077] END; BEGIN TREES; TITLE Tb6472; LINK TAXA = TaxaForAnalysisStep1696; TREE Fig._1_PAUP_2 = [&R] (Aspergillus_tamarii_NRRL20818,(Aspergillus_tamarii_NRRL25565,((Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443),((Aspergillus_flavus,Aspergillus_parasiticus),(Aspergillus_bombycis,((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL25393),(Aspergillus_alliaceus,(Aspergillus_ochraceus,(Aspergillus_fumigatus,((Aspergillus_nidulans,Aspergillus_versicolor),Aspergillus_ochraceoroseus)))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4079] END; BEGIN TREES; TITLE Tb6472; LINK TAXA = TaxaForAnalysisStep1696; TREE Fig._1_PAUP_3 = [&R] (Aspergillus_tamarii_NRRL20818,(Aspergillus_tamarii_NRRL25565,((Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443),(Aspergillus_flavus,Aspergillus_parasiticus)),(Aspergillus_bombycis,((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL25393),(Aspergillus_alliaceus,(Aspergillus_ochraceus,(Aspergillus_fumigatus,((Aspergillus_nidulans,Aspergillus_versicolor),Aspergillus_ochraceoroseus)))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4078] END; BEGIN TREES; TITLE Tb6472; LINK TAXA = TaxaForAnalysisStep1696; TREE Fig._1_PAUP_1 = [&R] (Aspergillus_tamarii_NRRL20818,(Aspergillus_tamarii_NRRL25565,(Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443),((Aspergillus_flavus,Aspergillus_parasiticus),(Aspergillus_bombycis,((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL25393),(Aspergillus_alliaceus,(Aspergillus_ochraceus,(Aspergillus_fumigatus,((Aspergillus_nidulans,Aspergillus_versicolor),Aspergillus_ochraceoroseus))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4080] END; BEGIN TREES; TITLE Tb6472; LINK TAXA = TaxaForAnalysisStep1696; TREE Fig._1_PAUP_5 = [&R] (Aspergillus_tamarii_NRRL20818,(Aspergillus_tamarii_NRRL25565,(((Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443),(Aspergillus_flavus,Aspergillus_parasiticus)),(Aspergillus_bombycis,((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL25393),(Aspergillus_alliaceus,(Aspergillus_ochraceus,(Aspergillus_fumigatus,((Aspergillus_nidulans,Aspergillus_versicolor),Aspergillus_ochraceoroseus))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4076] END;