#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 06, 2024; 13:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Klich M., Cary J., Beltz S., & Bennett C. 2003. Phylogenetic and Morphological Analysis
of Aspergillus ochraceoroseus. Mycologia, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S987]

[ The following blocks are input data for analysis step 1697 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1697;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Aspergillus_alliaceus
            Aspergillus_bombycis
            Aspergillus_flavus
            Aspergillus_fumigatis
            Aspergillus_nidulans
            Aspergillus_nomius_NRRL13137
            Aspergillus_nomius_NRRL25393
            Aspergillus_ochraceoroseus
            Aspergillus_ochraceus
            Aspergillus_parasiticus
            Aspergillus_pseudotamarii_NRRL25517
            Aspergillus_pseudotamarii_NRRL443
            Aspergillus_tamariiNRRL20818
            Aspergillus_tamariiNRRL25565
            Aspergillus_versicolor
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M534]

	TITLE beta_tubulin;
	LINK TAXA = TaxaForAnalysisStep1697;
	DIMENSIONS NCHAR=496;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490      ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .      ]
Aspergillus_alliaceus                   TATGCCTCGAT-----GCCCCCGAGTCAATATGCTTTGG--ACGTAGGGCCTCAGCAGAAACATGAGCTCGGATATATCATTCTCGTGTCTGACACGTGTTTGCTAATACCTTTGCAGGCAGACCATCTCCGGGGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACAACCCGTGT--ACACCT--------------CGAACGAACGACGACCAGATGG-CAT--TGGAAGAGTTTCGGATGGGTCTGACAGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAATTTTTCAGCCGC--------TATA-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_bombycis                    TATGTCTCGAT-----GTCTCCGAGTCAATATGCTTTGG--ACCCAGGACCTCAGCAGAAACATGAGCTTGGATGTATCAT-ATCGTGTCTGACACGTGTTTGCTAATATCTTTGCAGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACAACCCGTGT--ACAACT--------------CGAACGAATGACGACCAGATGGGCAT--TGGAAGAGTTT-GAATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAAATTTTCAGCCTC--------TATG-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_flavus                      TATGTCTCAAT-----GCCTTCGAGTTAGTATGCTTTGG--ACCAAGGAACTCCTCAAAAGCATGATCTCGGATGTGTCCT-GTTATATCTGCCACATGTTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTAT--ACACCT--------------CGAACGAACGACGACCATATGG-CAT--TAGAA--GTTG-GAATGGATCTGACGGCAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAAATTT-CAGCATC--------TATG-AAAACGCTTTGCA---ACTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTTGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_fumigatis                   TATGTCTTGACCTCAAAGCTTGGATGACGGGTGATTGGG--ATCTCTCATCTTAGCAGGCT-----ACCTCCATGGGTTCAGCCTCACTGTCATGGGTATCAGCTAACAAATCTACAGGCAGACCATCTCTGGTGAGCATGGCCTTGACGGCTCTGGCCAGTAAGTTCGACCTATATC--CTCCCAA-----------TTGAGAAAGCGGCGGAAACACGGAAAACAAGGAAGAAGCGGACGCGTGTCTGATGGGAAATAATAGCTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTATTTCAACGAGGTGTGT--GGATGAAACTCTTGATTTATACT---ATTTCGGCAACATCTCACGA-----TCTGACTC--GCTA----------CTAGGCCAACGGTGACAAATATGTTCCTCGTGCCGTTCTGGTCGATCTCGAGCCTGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGCGAG
Aspergillus_nidulans                    TGAG-C--GAA-----AATTTC------ACCTTTTTGGA------ATGATTTCTTT------------CTTCGTACACCT----------------------GCTAACAAGCCAACAGGCAGACCATCTCCGGTGAGCACGGCCTCGATGGCTCCGGTGTGTGAGTACAATCCGTCCA-GCATCCGC------------TGAAAACACGACACCTCAACAG------------AACC-----------TGACACAACC---CAGTTACAATGGTACCTCCGACCTTCAACTCGAGCGTATGAACGTCTACTTCAATGAGGTCAGT--GGATGAGATATCAGGTAGCA--------GTTTGGTGTG-------------TCTGACT-----T--------CGTCCAGGCCAGCGGTAACAAGTACGTTCCCCGTGCCGTCCTCGTCGATCTCGAGCCCGGTACTATGGATTGCGTCCGCGCCGGTCCCTTCGGCGAG
Aspergillus_nomius_NRRL13137            TATGTCTCGAT-----ACCTCCGAGTCAATATGCTTTGG--ACCTAGGGCCTCAGCAGAAACATGAGCTCGGATATATCAT-CTCGTGTCTGACACGTGTTTGCTAATACCTTTGCAGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACAACCCGCGT--ACACCT--------------CGAATGAACGACGATCAGATGG-CAT--TGGAAGAGTTTTGGATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAATTTTTCAGCCGC--------TATA-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_nomius_NRRL25393            TATGTCTCGAT-----ACCTCCGAGTCAATATGCTTTGG--ACCTAGGGCCTCAGCAGAAACATGAGCTCGGATATATCAT-CTCGTGTCTGACACGTGTTTGCTAATACCTTTGCAGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTGTAAGTACAACCCGCGT--ACACCT--------------CGAATGAACGACGATCAGATGG-CAT--TGGAAGAGTTTTGGATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAATTTTTCAGCCGC--------TATA-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_ochraceoroseus              TACGTCCCAAT-------TTT--------CATCTTT------------ATTTCCCC-----------CCCTCAT--------ATTTTGTC-AACA------TGCTAACAACCAAATAGGCAGACTATCTCTGGTGAACACGGCCTGGATGGCTCCGGTGTGTGAGTACAACCTGTGT--GCAGCT--------------TCGACAAAAAA-----AAATAATCAT--AAAGAGAACGT-GAA---GTCTGATGG-ATG-GATAGTTACAATGGCTCCTCTGACCTCCAGTTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGTGGTCATGA---TTCTAGTCTAC-------TGTC-AAGATGGC---CA------CCTAATTA--AAT----------TATAGGCCAGCGGAAACAAGTACGTTCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCTGGCCCCTTCGGTCAG
Aspergillus_ochraceus                   TAAGTCT--AC-----ACGTTGGCATTGGCA-GTCTGGGCTATCTGAGATCATCTTTGATACCTTGGCGCTTGTGACGCTCAATCCTA---GATACTTGTTTACTGATAGGTGAATAGGCAAAACATCTCTGGCGAGCACGGCCTTGACGGCGCCGGTGTGTAAGTACATCCCGCGTTTACACCTATCGAAATCAGAATCGAAGAGAGAAGAAATAAACGACCAT--GGTGAGAGATT-GATTG--TCTGATGGGATG-AACAGTTACAATGGCTCCTCCGACCTTCAGCTGGAGCGCATGAACGTCTACTTCAACGAGGTTCGTTGCCCGAAAATTTTCTATCTCCCTTCACCTATCCGAAACGCCCCGTACAAAGCTCTAACCCACGCTCTCTTCATTTTTTAGGCTTCCGGTGGCAAGTATGTTCCCCGTGCCGTTCTGGTCGATCTTGAGCCCGGTACCATGGACGCTGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_parasiticus                 TATGTCTCGAT-----ACCTTCGAGTTAATATGCTTTGG--ACCAAGGAACTCCTCAAAAGCATGATCTCGGATGTGTCCT-ATTATATCTGCCACGTGTTTGCTAACAACTTTGCAGGCAAACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGCCTGTAT--ACACCT--------------CGAACGAACGACGACCATATGG-CAT--TAGAA--GTTG-GAATGGATCTGACGGCAAG-GATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAATGTCTACTTCAACGAGGTGCGT-ACCTCAAAATTTTCAGCATC--------TATG-AAAACGCTTTGCA---ACTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCTGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_pseudotamarii_NRRL25517     TATGTCTCGAT-----GCTTTCGAGTTAATATGCTTTGG--ACCAAGGAACTTCACAGAAGCATGAACTCGGATGTGCCCT-ATTGCGT-----------TTGCTAACATCCTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAGTCCGTGT--ACACCT--------------CGAACGAACGACGAGCAGATGG-CAT--TGGAAGAGTTG-GAATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAATTTTTCAGCCTC--------TATG-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_pseudotamarii_NRRL443       TATGTCTCGAT-----GCCTTCGAGTTAATATGCTTTGG--ACCAAGGAACTTCACAGAAGCATGAACTCGGATGTGCCCT-ATTGCGT-----------TTGCTAACATCCTTGCAGGCAGACCATCTCTGGCGAGCTCGGCCTTGACGGCTCCGGTGTGTAAGTACAGTCCGTGT--ACACCT--------------CGAACGAACGACGAGCAGATGG-CAT--TGGAAGAGTTG-GAATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCTGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGT-ACCTCAAATTTTTCAGCCTC--------TATG-AAAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTCGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_tamariiNRRL20818            TATGTCTCGAT-----GCTTTCGAGTTAATATGCTTTGG--ACCAAGGAACTGCACAGAAGCATGAACTCAGATGTGCCCT-ACTGTGTCTGCCACGTGTTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGT--ACACCT--------------CGAACGAACGACAACCAGATGG-CAT--TGGAAGAGTTG-GAATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGGATGAACGTCTACTTCAACGAGGTGCGT-ACCTCACATTTTTCAGCCTC--------TTTG-ACAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_tamariiNRRL25565            TATGTCTCGAT-----GCTTTCGAGTTAATATGCTTTGG--ACCAAGGAACTGCACAGAAGCATGAACTCAGATGTGCCCT-ACTGTGTCTGCCACGTGTTTGCTAACATCTTTGCAGGCAGACCATCTCTGGCGAGCACGGCCTTGACGGCTCCGGTGTGTAAGTACAATCCGTGT--ACACCT--------------CGAACGAACGACAACCAGATGG-CAT--TGGAAGAGTTG-GAATGGGTCTGACGGGAAG-GATAGTTACAATGGCTCCTCCGATCTCCAGCTGGAGCGTATGAACGTCTACTTCAACGAGGTGCGT-ACCTCACATTTTTCAGCCTC--------TTTG-ACAACGCTTTGCA---AGTCCTGACC---GCT--------TCTCCAGGCCAGCGGAAACAAGTATGTCCCTCGTGCCGTCCTTGTCGATCTTGAGCCCGGTACCATGGACGCCGTCCGTGCCGGTCCCTTCGGTCAG
Aspergillus_versicolor                  TGCGTC--GAA-----AATTTC------ATCCATTTCAG------ATGGTATTTCC------------TTTGGTGCTTTTT---------------------GCTAACGACCCTATAGGCAGACCATCTCCGGCGAGCACGGCCTTGATGGCTCCGGTGTGTGAGTACAACCCGTCCA-AGACTCGA------------TCAAAACACGAC---CGAACAC------------AACCC---------CTGATATAATC---CAGTTACAATGGTACCTCCGACCTCCAGCTCGAGCGTATGAACGTCTACTTCAACG---------------------------------------------------------------------------------------AGGCCAGCGGCAACAAGTACGTTCCCCGTGCCGTTCTCGTCGATCTCGAGCCCGGTACTATGGACGCTGTCCGTGCCGGTCCCTTCGGTCAG
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = beta_tubulin) = 
		N: 1-496;
CODONPOSSET  CodonPositions (CHARACTERS = beta_tubulin) = 
		N: 1-496;
END;
[ The following blocks are output data for analysis step 1697 ]
BEGIN TREES;
      TITLE Tb6473;
      LINK TAXA = TaxaForAnalysisStep1697;
      TREE Fig._2 = [&R] (Aspergillus_nidulans,(Aspergillus_versicolor,((((((Aspergillus_tamariiNRRL20818,Aspergillus_tamariiNRRL25565),(Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443)),(Aspergillus_flavus,Aspergillus_parasiticus)),(((Aspergillus_nomius_NRRL25393,Aspergillus_nomius_NRRL13137),Aspergillus_alliaceus),Aspergillus_bombycis)),(Aspergillus_ochraceus,Aspergillus_fumigatis)),Aspergillus_ochraceoroseus)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4081]


END;