#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 06, 2024; 13:24 GMT

TreeBASE (cc) 1994-2008

Study reference:
Klich M., Cary J., Beltz S., & Bennett C. 2003. Phylogenetic and Morphological Analysis
of Aspergillus ochraceoroseus. Mycologia, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S987]

[ The following blocks are input data for analysis step 1698 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1698;
        DIMENSIONS NTAX=13;
        TAXLABELS
            Aspergillus_alliaceus
            Aspergillus_bombycis_NRRL25593
            Aspergillus_bombycis_NRRL28900
            Aspergillus_caelatus
            Aspergillus_flavus
            Aspergillus_nidulans
            Aspergillus_nomius_NRRL13137
            Aspergillus_nomius_NRRL29212
            Aspergillus_ochraceoroseus
            Aspergillus_parasiticus
            Aspergillus_pseudotamarii_NRRL25517
            Aspergillus_pseudotamarii_NRRL443
            Aspergillus_versicolor
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M533]

	TITLE nor1;
	LINK TAXA = TaxaForAnalysisStep1698;
	DIMENSIONS NCHAR=312;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310  ]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .  ]
Aspergillus_alliaceus                   GATGATCGTGGTGCAGCTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
Aspergillus_bombycis_NRRL25593          GATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCCGTCCAAACCCTGCGGGAAGAGTACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACAA
Aspergillus_bombycis_NRRL28900          GATGATAGTGGTGCAGCTGGACTGCAACTCGGAAACCGACGCCCAGACAGCTGTCCAAACCCTGCGGGAAGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACTATGCCTCTCGAACATCTCCAGGCGCACATGATGATCAATATGTATGCTCCCGTCTTGCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACAA
Aspergillus_caelatus                    GATGATTGTGGTGCAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTCCAGACCCTTCGGGAGGAGCACGGGGTCACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCATCTTACTGTTTCAGGCAACCCGCCTGATGCTGTA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
Aspergillus_flavus                      GATGATCATAGTGCAGCTTAACTGCGACTCGGAAACTGATGCCCAGGCAGCCGTCCAGACATTGCGGGAGGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCCCTCGAGCATCTCCAGGCACACATGATGGTCAACATGTATGCTCCCGTCCTACTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
Aspergillus_nidulans                    GCTGATCGCAGTCCAACTGGACAGTGGATCGAAGTCCGATCCCGCCGACGCGGTCAGCATTCTCCAGCGCGATTACGGCATTACGCATCTCGATGTAGTGATCGCGAACGCAGCTATTGCGGCCAACTACGGTCCAGCCTCGACCATGCCTCTCGAGTATCTGGAGACTCACATGCAGATTAACGCATACGCGGCCCTGCTACTGTTCCAGGCGACTAGGGTCCTTCTCC---------AGGCCGCCA------AATCGCCGCAGTTCATCTGCGTCGGGGCCCCGATTAGCACGATTACCGAGATGGAGAG
Aspergillus_nomius_NRRL13137            GATGATCGTGGTGCAACTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTATCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
Aspergillus_nomius_NRRL29212            GATGATCGTGGTGCAACTGGACTGCAACTCGGAAACCGATGCCCAGACAGCCGTCCAAACCCTGCGGGAGGAACACGGGGTGACGCACTTGGACGTGGTAGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAACATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCGGTCCTCCTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTATCTTGATCGGTGCCCCAATCAGCACCATCACCAACATGCACGA
Aspergillus_ochraceoroseus              ACTGATTGTCCTACAGCTGGACTGTACTTCCCAGTCTGACGCCGACGAAGCCATTGCGACGCTCAAGCAAGAATATGGCCTCACGTATCTCGATGTAGTGATCGCGAATGCCGCGATCGCCGCCAACTACGGCCCCGCGTCGACCATGCCGCTGGAGCATCTCGAAGCCCATATGAAAGTCAACGCCTACGCCGTCCTGCTGCTCTTCCAGGCCACGCGACTCCTGCTGCAAG------AGGCAGCCTCCTACCACCCTCCACAGTTCATTCTGATCGGGGCGCCCATCAGCACCATTACCGAGATGGAAGG
Aspergillus_parasiticus                 GATGATCATAGTGCAGCTTAACTGCGACTCGGAAACTGATGCCCAGGCAGCCGTCCAGACATTGCGGGAGGAGCACGGGGTGACGCACTTGGACGTGGTGGTTGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCCCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCCTACTGTTTCAGGCAACCCGCCTGATGCTGCA----------GCAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
Aspergillus_pseudotamarii_NRRL25517     GATGATCGTGGTACAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTTCAGACCCTTCGGGAAGAGCACGGGGTCACGCACTTGGACGTGGTGGTAGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCTTACTGTTTCAGGCAACCCGCCTGATGCTGGA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
Aspergillus_pseudotamarii_NRRL443       GATGATCGTGGTACAGCTGGACTGCAACTCGGAAACCGATGCTCAGACTGCTGTTCAGACCCTTCGGGAAGAGCACGGGGTCACGCACTTGGACGTGGTGGTAGCCAATGCGGCCATGGCGACGAACTTTGGGCCCGCGTCCACCATGCCTCTCGAGCATCTCCAGGCGCACATGATGGTCAACATGTATGCTCCCGTCTTACTGTTTCAGGCAACCCGCCTGATGCTGGA----------ACAGTC--CAAGCAACAGGCCAAGTTTGTCTTGATCGGCGCCCCGATCAGCACCATCACCAACATGCACGA
Aspergillus_versicolor                  GCTGATACTCGTCCAGTTAGACTGCGCGTCTCGAACCGACCCCGAAGACGCAATTAAATTACTTCAGCAAGATCACGGACTGACCTATTTGGACGTCGTGATCGCGAACGCAGCCATCGCCGCAAACTACGGGCCAGCATCCACCATGCCTCTTGAGCACCTCGAAGCACACATGCAAATAAACGCTTACGCCGTCCTTCTTCTCTTCCAGGCCACCAGGCTCATGCTCCAAGCAGCAGGAGCAGAAAACAACAGACCACCGCAATTCATCTGCATTGGCGCACCAATCAGCACAATCACCGAGCTGGAAAG
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = nor1) = 
		N: 1-312;
CODONPOSSET  CodonPositions (CHARACTERS = nor1) = 
		N: 1-312;
END;
[ The following blocks are output data for analysis step 1698 ]
BEGIN TREES;
      TITLE Tb6474;
      LINK TAXA = TaxaForAnalysisStep1698;
      TREE Fig._3 = [&R] (Aspergillus_parasiticus,(Aspergillus_flavus,((((Aspergillus_bombycis_NRRL25593,Aspergillus_bombycis_NRRL28900),((Aspergillus_nomius_NRRL13137,Aspergillus_nomius_NRRL29212),Aspergillus_alliaceus)),((Aspergillus_pseudotamarii_NRRL25517,Aspergillus_pseudotamarii_NRRL443),Aspergillus_caelatus)),(Aspergillus_ochraceoroseus,(Aspergillus_nidulans,Aspergillus_versicolor)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4082]


END;