#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 08, 2026; 23:41 GMT TreeBASE (cc) 1994-2008 Study reference: Lü J., Suo H., Yi R., & Ma Q. 2015. Glyma11g13220, a homolog of the vernalization pathway gene VERNALIZATION 1 from soybean [Glycine max (L.) Merr.], promotes flowering in Arabidopsis thaliana. BMC Plant Biology, 15(232): 1-12. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18010] [ The following blocks are input data for analysis step 17019 ] BEGIN TAXA; TITLE TaxaForAnalysisStep17019; DIMENSIONS NTAX=21; TAXLABELS Aquilegia_coerulea_Aquca00900894.1 Arabidopsis_thaliana_AT3G18990.1 Citrus_sinensis_Orange1.1g016655m Glycine_max_Glyma11g13220.1 Glycine_max_Glyma11g13231.1 Glycine_max_Glyma12g05261.1 Linum_usitatissimum_Lus10032871 Medicago_truncatula_Medtr1g021440.1 Medicago_truncatula_Medtr4g068310.1 Oryza_sativa_Os11g09160.1 Panicum_virgatum_Pavir.Ha01581.1 Panicum_virgatum_Pavir.J12984.1 Phaseolus_vulgaris_Phvul011G050700.1 Solanum_lycopersicum_Solyc07g054630.2.1 Sorghum_bicolor_Sobic.005G073500.1 Theobroma_cacao_Thecc1EG000513t1 Theobroma_cacao_Thecc1EG006967t1 Theobroma_cacao_Thecc1EG006968t1 Theobroma_cacao_Thecc1EG033936t1 Vitis_vinifera_GSVIVT01031850001 Zea_mays_GRMZM2G001048.T01 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M33646] TITLE 'F1 Glyma11g13220, a homolog of the vernalization pathway'; LINK TAXA = TaxaForAnalysisStep17019; DIMENSIONS NCHAR=840; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Aquilegia_coerulea_Aquca00900894.1 --------------------------------------------------------------------------------------------------------------------------------------MKKP-----------EFFKIIHPSLCTTEQLRIPPDFLKHISDEDN--GIAVLEGPSATFDWHVRFCKKEGG---TYLTE-GWKEFVRDNALGKYEFVVFRHRGNMCFHVEIYAKSG-CKTLDEY-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KAKVRNAAMSFTSTRPYFMRCLYPSCVYTS-YVL-------------------------------NIPTDFAEAYLPKSKKEIVLQ-DRSGKSWFVTCNP----GRRQYTFCGGWTCFVNENQLNAGDVCVFELI-------GYMKLRVYIFRVNPTS---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT3G18990.1 --------------------------------------------------------------------------------------------------------------------------------------MPRP-----------FFHKLIFSSTIQEKRLRVPDKFVSKFKDELS--VAVALTVP-DGHVWRVGLRKADNK---IWFQD-GWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIFNLSH-SEINYHSTGLMDSAHNHFK-RARLFEDLEDEDAEVI---------------------------FPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAE-------EPTPTPKIPKK-----------------------------------RGRKKKNADPEE------------------INSSAPRDDDPENRSKFYESASAR-------------------------KRTVTAEERERAINAAKTFEPTNPFFRVVLRPSYLYRG-CIM-------------------------------YLPSGFAEKYLSGISGFIKVQ--LAEKQWPVRCLY----KAGRAKFSQGWYEFTLENNLGEGDVCVFELLRT-----RDFVLKVTAFRVNEYV---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Citrus_sinensis_Orange1.1g016655m --------------------------------------------------------------------------------------------------------------------------------------MPRP-----------YFHKLILASTIRDKRLRIPENFVRNFKDDLS--AAATLIVP-NGMVSRVGLRRLDNK---VWFYD-GWQEFMERYFIRIGYFLVFRYEGNSAFNVYIFNLPS-SEINYQPNALSNFEVPNHSKQYHIFAEMEDDDSEHV-------------------------------DQPTVNKTFNPPSFQNLLNSSKLSNSINGAGEA-------NLQRLKVKLYSQDGETPKLKK-------------------------PGRKRKIDPNVQ-------------------ASSAQEVHDGEMQFRFYESASAR-------------------------KRTVTAEERERAINAAKAFEPSNPFCRVVLRPSYLYKG-CIMVSCRISITLHCFSVSHDNMLDVRCIYFLLLQYLPSCFAEKHLNGVCGFIKLQ-LSDGKQWPVRCLY----RGGRAKFSQGWYEFTVENRLGEGDVCVFEVLRA-----REFVLKVTVFRVSESAGFMSRH---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma11g13220.1 -----------------------------------------------------------------------------------------------------------MRDFSFHSNDLLILQGNNRERWKMDYHQDNPA----------VFFTTIKN----TKQLKVPEEFLKHLNKDLW--SNSVLIGP-SGDKWQVTILKKGNN---VYMDN-GWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFGGNG-LERLCRKEAREEQAATPQFFDLPFSNKASISDGCEIKKTRQEQASAPSLARTNKSKQRKTFVGSSHLHESNSYKKDLPSSNKGTLSKGCEIKKTRQEQAA-------TPSFLRPNKIKQRKTSARSSNLNESKSCQEGQERVATLSWARTNNYNSTQRKTSAGSS--------------------HLHESNSSKEDLPFSNKASLSK----DFPK-----------------PQSSINIECSEACKLAESFTSRNPHWKHLLTKCNLER--CIL-------------------------------LIAAEFARKYIPEALEQIYLW-NSEGKSWEVRVHYFRNRNTWYAAFKRGWERFVRDNKLMKGDTCIFEVEE------EQGHWSVHIFRTGCAPH--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma11g13231.1 -------------------------------------------------------------------------------------------------------------MFHCSSITITMGDFSLHENN-MDYHQDNPA----------VFFTIINN----TKLLKVPEEFLKHLNEDLS--SNAVLIGP-SGDKWQVTILKKGNN---VYMNN-GWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIFCGNG-LERLCLKETRQEQAVTPQF-------------------------------------------------------LDLTFSNKALISDGCEIKKTSQEQAS-------TPSLVRITN-------------------------------------KSKQRKTSAGSF-------------------LHHESKSSCQEDLPFSNKALLSK----DFPK-----------------PLSSIKFETSEACKLAESFTSRNPHWKHLMTKCNVEDH-CTL-------------------------------HIATQFACKYIPEVVKQIILW-NSEGKFWEVEVTCLRYQNKRYTRFTTGWGKFVRDNKLMKGDTCIFELE-------DENHMSVHIFRTSV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Glycine_max_Glyma12g05261.1 -----------------------------------------------------------------------------------------------------MYLYQVSFQFLFHCSSITMGDFSLHENN-MDYHQDNLA----------VFFTIIKN----TKLLKVPEEFLKHLNEDLW--SNEVLIGP-SGDKWLVTIWKKGND---VYMKN-GWSLFLKDNSVVLDEFFLFTYHGGNCFHVQIFGGNG-LERLCLEETRQEQAAIPQF-------------------------------------------------------FDLPFSNNASLFDGYEIKKTRQEQAS-------IPSLARTKN-------------------------------------KSKQRKTSAGSL--------------------HHHESKSCQEDLPFCNKALLSK----DFPK-----------------PMSSIKIESSEACKLVESFTSRDPHWKHLMTKCNVEDH-CTL-------------------------------HIATEFACKYILEAVKQIILR-NSEGKFWEVEVACLRYQNKRYTQ--------------------IYD---------RMGKIRA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Linum_usitatissimum_Lus10032871 ---------------------------------------------------------------------------------------------------------------MEEELSGGCRSWEEDMYW-KHFQFT-------------HFSQFLLPGY--HHQLAMPETFFANQRKKLP--ECVTLKGP-GGDTWEVGLAVRSGT---LFFDQ-GWEEFVKDHLLKEHDLLVFKYNGVSHFEVMIFDGVTFCEKATSYFVKKSSGGKDVD----NGIHSKRRLAGNS---------------------------------SGVIMATPIGQVRGSSLEKTAENDIGKVQPS------SQPAARPMMDDEFGTTPILRPVQHPIIWE------------------ATNFKKQKMSSG-------------------HIPDNETVKSEELSCSGEREKEQ----DVRSTPLSYGMVHDA-PYISFRKVATEVDKKKALLLAQEAVTLEGFY-VIMKPTHVYRK-FFM-------------------------------SIPCGWMNKHLNMLLKHPVTL-KMKGKTWNTKFVY--QETRKSGGLSAGWRSFAGDNNLQEFDICVFNPDGPFQ---TSMSLNVDIVRAVEEE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Medicago_truncatula_Medtr1g021440.1 ------------------------------------------------------------------------------------------------------------------MEVDGSRSWEEDIYW-NNFQF--------------IHFTQFLQTTDFQQQLALPKTFSDNLKKKLP--ENVTLKGP-SGAVWDIGLTTRDNT---VYFVG-GWERFVKDHSLKENDFLVFKYNGESLFEVLIFDGDNFCEKATSYFVRKCGHAQTEE----GGSKVKNTNTSVE--------------------------------------EVNTASNGGVDCGSPETFRVRRLDSI------RTPLAVPVKTTDKMTLNAFFESASPKELPVYFPKQ------------PTGQRTKKPANE-------------------VTPGQTKKRGRPPKEGNSREGAL----DLRASNKEHSEAAQS----------RLSSAKDEKKLAQSFTSTFPYFVKIIKTFNVDGP-RIL-------------------------------NVPHQFSIAHLPNGKIKIILR-NLKGEQWTANSVP-RSRVHTSHTLCGGWMSFVRANNIKLGDVCVFELI-------NDCELRVRVAEVDEDGLVSEVQKEGIDHQNGSCET--------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Medicago_truncatula_Medtr4g068310.1 --------------------------------------------------------------------------------------------------------------------------------M-DHEQQDKP-----------SFFAIIKEGFN-TKCMKVPPKIVMDLGEEFWKKASIILVCS-SGEKWEVKILKKAND---IYVRNFGWQKFLKDNSVGLEEFLVFTYIGENLFNVEIYGKNG-LEK----PCFK----------------------------------------------------------------------------------KKQEVVA-------APIVAKRK--------------------------------------RGRPRRNPAGVE-----------------------------EEKEEAAPTIVAK----------------------------------------TKMVQRKYP-SRVCVRKEKAETL-ATI-------------------------------VTKKGIPRKN-PAPLSVILVD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Oryza_sativa_Os11g09160.1 ---------------------------------------------------------------------------------------------------------MVVREKQGGRMGKGKGKGKEKECD-INCFGR-------------SFFRVLLTLQS-LERMKIPSSFNQCLQNQPT--GMVSLVDR-SGNKWSAELTSDSEG---FFFVH-GWKEFVRDNSIQCGQFLVFTYDKRSQFSVTVFEPSG-IDKISTF-----SAHPSKN----VIIKTESDEGGMV-------------------------------TAAITTEKMAPALKENNGITGKRTRDVDYLMED-------RVVVFKKSSEANVCESSRRKRAGASAGKSKVT--------------STSHNSTRGSSC-------------------SSDEDNSSSKSPNPPFLMRFLSG----EVSRRGRCVSKGQRQLTVISQRRPVTEAEKDHALQRAREFKSKNPFAVQIMMESYVYVG-FFM-------------------------------NIPCEFVRECLPHTNKRITLW-DPQGKAWEVNYVY--YSDRSVGSFSGGWGKFAVGNNLEKFDVCVFELV-------QKDNIKVHIYRVVPEITPHKLRSDPK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Panicum_virgatum_Pavir.Ha01581.1 --------------------------------------------------------MVSGRKKQQGSSGAAATPEKKSGKGKGKAAREDGKERAKEKEVTGASKKAAKGKEPAKEKQKEARGDGKKGRA-KAKQQQKEAAAAAAKSAGQQFFKIFFSDQS-GQRLKIPASFHQHLKEQPT--GLVSLKGP-SGNTWQAVLTSDSEG---LFFGQ-GWKEFVMDHSVKQGHFLVFTYDGLSQFSVTVFGSLGVVDPPAL------IAKPTND------VVIKIEDDEEV------------------------QGDMDAGGTSDTSVLPPKEGNGKTRKRTRGVNDLSEGGNA----SKRHSSVAKNAEKKRPEAKTRKRTRGVNDLSEGGNASKRHSSVAK----NAEKKRPEAIPR--TSKDRLTSKDASTIDNTEKGTPFRLLDESTAFNKTQVREK----NMPKLGKFIVRRARQPVVISQRRPVTQEEKDLALKRAKEFKSENPFAVQTMMESYVYVG-FFM-------------------------------NITCEFVRESLPRTSKKMTLW-DPLGKPWEVNYVY--YSGRSVASFSGGWGKFALGNNLEKFDVCVFELF-------KEDNIRVHIYRVVSEITPLLRASSKD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Panicum_virgatum_Pavir.J12984.1 --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GKITLKVY-NGSTCTVVVARYQNK---LVLEA-GWEAFISTHDIRLADLLVFRYNGNFQFEVLVFDPSC-CVKESSNVAQNCCDHVRVQ-----------------------------------------------------------QRHRNLLDSSSVSDDDQETMQS-------SGSEYPT---------------------------------------PGEKKGPNQGTK-------------------KTNTSSSTCHLNATELADLYSSE----NDQEISSMTSYIFSP------FTHLTQMQRMKVEKRVQDICSSIPIFGSVMTKCNITRNPCYL-------------------------------GICRKYAHQYLPHESQILRLQ--QHGKVWQVLLC---TTKRNSIQFSRGWKKFVSDNKMQIGDICLFELLKDE----KMLTMNIHIIRK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Phaseolus_vulgaris_Phvul011G050700.1 --------------------------------------------------------------------------------------------------------------------------------M-TSGAKKYP-----------HFFKIFLPEQD-SHIMKVPKEFLKHLDEDLS--SNAVLSGPSSGEQWQVSVLKKGND---VYMQN-GWPEFVTDNLVVLNEFLLFTYHGDNCFHVQIFGKNG-LERLCLRETRQEQAAAIPKNSTQTFAGLSPHKSKSC-------------------------------------KRDTPFSNKDFIFTGCETMETRQKQTA-------TPSLATTK--------------------------------------KNKERKFSPGAS--------------------HLQESKSYQQDLSFSNKASLPK----DFPT-----------------PQHSIEIESSKAWKLAESFTSCNPHWKHLMTKSNVEDC-CIL-------------------------------PIATEFARKYIPEAVKQIHIG-NCKGTSWKVQVNCFKNQDRRYAQLTTGWVNFVRENKLMRGDTCIFELE-------EDFHFRVHIFRTSCAPR--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Solanum_lycopersicum_Solyc07g054630.2.1 ----------------------------------------------------------------------------------------------------------------------------MESCS-NSYSAG-------------SFYVIVEPSVMDDRQLRLPDKFVREHGDELL--DTVKIIVP-TDDFWCVGLKKAGKM---IWLHD-GWQEFMEHHSVNCWYFLLFKYGQTSCFNVHIFDLAA-TEIDYQLRSHGYAKSRDVA----QDLSHRKDKIVGD----------------------NGFTSSIEIVDLLETEQGPESSAKSSELPHRAKRRKIASGKIKITRCYETRSKTNKLHDNGQLLNAKNLNISG----------------------NGSLTKPVGGKS-------------------VRRSIKTPIHSAVATGGTRKLFTS---KQREKSLGRGRYDRR-----ERAQQKVSETSRAIQTAKMFIPENPYFLQILEKYNVERN-YIL-------------------------------NIPVEFVRKYMPKTSELIELQ-DTDGNKWKVRCI----RRKLRVLLSKGWLNFVTDNSLLVGDVCVFELLKNFQA--VALILKVHMFRNRVEENSKNLHTGSLFEQTLSTGKNCVLQFDESKHTKSSDAFEPLSSDRTNHKTDTENSFGQQQEKSVVHGSSGNRRKRGRPMDAEANTDTENSFGQQQEKSVVHGSSGNRRKRGRPRDAEANTDTENSSRQQEEKSVVHGSSGNRRKGRRLRDAKGNSATTAAKMFTPENPYFMITLGEYHVVRNYILFQWN-- Sorghum_bicolor_Sobic.005G073500.1 MAPLRISSSEDGKWERRPTPARTSGLLSRLSKFRIRRRPSKFHGFILHNEKRTTMRGRPKKQQGTTSSAAAAVKEREAARGRPRSKGKETEMGGEGQEPATEKQKKTQGKGMEKEKEKEKNTAVREDGE-QDDNNEKEKTAAGAGNVCPQFFKVFFPELS-GERLKIPPMFRQHLQEQPT--GPVSLRGP-SGKKWQATLASESEA---WFFEQ-GWKEFVTDHSINKGYFLVFTYDGPSQFSVVVFSPSGVTDPIAL------KAKPTNE------VVVKIEEDEE-----------------------GIQGDMDAGG--ASEVPIPPTQEGN-VVTGRRTRAMT---AG-------ASEIPPLPTEEGNVVTGKRTRAVT-DLPADADASKRI---------QADKRRSQAGTS-------------KDGLTIVRNATFSLLDESKTFNKTQVRDK----NVPRSGKFLLKTSRAPVVISQRRPVTEEERDLALRKANEFKSKYPFTVQIMMESYVYVG-FFM-------------------------------NIACDFVRKSLPHTNKKMTLW-DPLGKPWEVNYVY--YSDRSVGSFSGGWGKFALGNNLEKFDVCIFELF-------KEDNIKVHIYRVVPEITPLLRASNKD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Theobroma_cacao_Thecc1EG000513t1 -----------------------------------------------------------------------------------------------------------MQSQGMAPKSQNCRMMEKHKYW-KEFQSNRH-----------QFFKIMIGDF--RNQLRIPRKFMSNFRENLS--GTVYLRGP-SGFMWAVEVERMFDE---VVFGN-GWQNFVKDHSLADADFVVFRYDGNSTFNVVIFDLSG-CEREGSYFVKK-HTSACSN----GRCGFRREDGEGS----------------------EEVIDLDKVHENHMQKEKLTKGKGNTISKAVDTISQLKATQE-------KHLRVGKSAIASGVIEILMDESEESSGS------------------ATEASEDWSNNS-------------------VSLKCKSKKKEVGCLTNDSGKMK----RPLDLPGSYNLYFIS-----NRRKITEEEKQRPRRLAKQYSSTRPSFSIVMKPTHVCKA-FTV-------------------------------NIREKWLDMHVPDKVRIALLRVAPDEKRWPVRIM----RTKWRRGFARGWGKFVLDNNLEEHDVCVFELNEEGQANKKSIGFNVVIFRVLDEIVPLTRFSNTQPNASD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Theobroma_cacao_Thecc1EG006967t1 ----------------------------------------------------------------------------------------------------------------------MAHRTRKRPRS-NHVVDESL-----------HFFKIILPRTIAEKNLTIPNKFVGKFGHELS--GVATFVLP-NGRKWKIGLTKADDR---IWLDD-GWHEFIEYNSIRYGYFLVFRYEKDSTFHVIIFDNSA-CEVDYPSNDEE-LTDGESE----KHSIHQDSETEEDDSPEVLGVKAPSLNERANREAINGNQDASSQQHLVRKPQVDAASHKNSEVKQDKVTRVKRCKTE-------EVEFDNLNESRQINSNIKELRRSHRLLPSKSHLMNQN---------ATGIHDQDLSVQLQDLKQQFDGKKLKITIQRANLQSLEVMHKGNEANKETESGK----QDQHGSIQDEEIEIYVSRMFFGISSTSRDRERAIRAVEVIKPKNPCFMIILRRGN-FDS-STM-------------------------------HVPAGFDTEYLSGVTDHIRVE-DSDGREWFIEFK---RHRNFGILLRKGCYRFWRDNNLKEGDVCIFELRDK-----KAAVHKISIFRADSN----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Theobroma_cacao_Thecc1EG006968t1 ---------------------------------------------------------------------------------------------------------------------------MSQPVG-PALPEKKPC----------IFYKLIVSSILQDKKLRIPHKFVKKYGDELS--SIVTLATP-SGRFWLVELKKDKRR---MWFDS-GWNVFVEYYSISVGYFLVFRYEGNSHFNVHVYNLAA-SEINYLSNGLNNSEELSRD-----EHVKNIEDGDLAEIMGSCPKCSSSYFLTDKDSDECLDRDRKKYKNSTSGADLKNLHQKNDMHDLQATFQLTQGKGF-------QLNVVELTSTADEGGPYFLNETQQI---------------------TKKIKQETEPSK-------------------LHELKNFLYRVFLIDFTHPNSLK----DIDEHEEELPAMNTPRNIARRWRDVTTEDKQSALHAAATFKPDNPFCRIILRPSYVYKG-ILL-------------------------------HIPRWFARKHLNGVNGTITLQ-VSEGKKWPVRCIY----VDGHLKFCKGWAEFVLDNNLDEGDVCVFELINT-----EEIVLKVTIFRVLEDAGPVKKL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Theobroma_cacao_Thecc1EG033936t1 ------------------------------------------------------------------------------------MPFTETRSKSKAFISYRTMSRSAVWVCKMGDSCKDCRSWEEEIFW-THFQSI-------------HFSQFLHGDF--LQRLEVPEKFAKNMKQKLP--ETVTLKGP-SGIIWDVGLKADGDT---LFFDC-GWKIFVKDHSLVENDLLIFKYNGMSQFDVLMFDGRSLCEKAASYFVRK-CGHTEYD----SGCQTKRKMNETP-------------------------------------VEIVHNSSHC-GLESSPEKSINNNIDT-------RPSRQPITSAAT----------------------------------NKKLRIVGSSTR-------------------SIPARKSLRGKDLTTFAAEVKVETGDLEFDHTSMDGDVFSPR--HTARKRRATQVEKANVFLMAQEALPREGFM-VVMKPTHVARR-FYM-------------------------------AIPTAWVAKHLSKQNEDVILR--INKQTWKTRFYY--HRNRGCGGLSGGWRNFVNDNNLDEDDACVFEPADIGN---KPMILDVSIFRVLQAPVPLIQVHPASY----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Vitis_vinifera_GSVIVT01031850001 -----------------------------------------------------------------------------------------------------------------------------------------------------------------MTLQRIPPAFIKHLAGDIS--DRATLTCSSGGH-WGVTVWKNPDG---TYLED-GWKEFMRENNLGDDEFLVFIYDGDMRFHVKIFEKNG-VKRSAP-------------------------------------------------------------------ISDNPTEEETGASSGKRS--------------------------------------------------------------RGRPRKYPVGSL-----------------------------QGPVESSRTQKTR------------------------------------------SFTSKFPYFECLMTKSCVEKC-FLL-------------------------------TIPKAFSQSHFPPAKLKVVLR-NSAGKTWEVNCIY----HAKRHSLSGGWSTFVRENSLKQGGTCRFELV-------EKNVMQVHVL---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Zea_mays_GRMZM2G001048.T01 -----------------------------------------------MRGRKRQQVSASSAAALVKGRESTKQKEKEARKEKEAREAGREPAAKERQMRRKAGKEKETETGGEGKEPAKEKEVREEGKE-NDKHKEKAKTKANVCP---QFFKVFFPEQS-TERLRIPPMFNQHLKEQQPT-GAVSLRGP-SGNRWQAALASESESEAAWCFDQ-GWKEFVTDHSLRLGHFLVFTRDGPAQFSVAVFSSSGVIDPAAL------DARPTAN----GGAAVKLEDGEGV----------------------GVRGDVDAGGDTSSEVSLLPAEEGDGGATGRRTGATSGGAGG-------ASEMSLVLREEGRGVTGKRARATTSDLPADASAPKKHSALAK----KAGKRRPQAATS-------------KDVSMIVHNPTFSLLDESKTFNKTQIRDK----NVPRSGKFLLRTTKAPVVISQRRRVTEEEKCLALRKAMEFKSKHPFTMQIMIESYVYVG-FFM-------------------------------NIACEFVRESLPRTSKKMTLW-DPMGKPWDVSYVY--YGDRAAGSFGGGWGRFALGNNLEKSDVCVFELF-------EEDNMRVHIYRVVPEITPLLRASNKD------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ ; END; [ The following blocks are output data for analysis step 17019 ] BEGIN TREES; TITLE 'F1 Glyma11g13220, a homolog of the vernalization pathway'; LINK TAXA = TaxaForAnalysisStep17019; TREE 'PAUP_1' = [&R] ((Aquilegia_coerulea_Aquca00900894.1:0.56839,(Vitis_vinifera_GSVIVT01031850001:0.544971,(Medicago_truncatula_Medtr4g068310.1:0.84179,(Phaseolus_vulgaris_Phvul011G050700.1:0.270256,(Glycine_max_Glyma11g13220.1:0.220542,(Glycine_max_Glyma11g13231.1:0.098217,Glycine_max_Glyma12g05261.1:0.120416):0.077226):0.135216):0.271303):0.366646):0.205424):0.1370975,(((Solanum_lycopersicum_Solyc07g054630.2.1:1.011385,Theobroma_cacao_Thecc1EG006967t1:0.877669):0.21722,(Theobroma_cacao_Thecc1EG006968t1:0.74167,(Citrus_sinensis_Orange1.1g016655m:0.293206,Arabidopsis_thaliana_AT3G18990.1:0.318211):0.264175):0.251505):0.403515,((Oryza_sativa_Os11g09160.1:0.52275,(Panicum_virgatum_Pavir.Ha01581.1:0.382646,(Sorghum_bicolor_Sobic.005G073500.1:0.176832,Zea_mays_GRMZM2G001048.T01:0.359236):0.127635):0.218525):0.586337,(Panicum_virgatum_Pavir.J12984.1:1.208533,(Theobroma_cacao_Thecc1EG000513t1:0.884859,(Medicago_truncatula_Medtr1g021440.1:0.969127,(Theobroma_cacao_Thecc1EG033936t1:0.530633,Linum_usitatissimum_Lus10032871:0.586939):0.304905):0.19274):0.180399):0.141838):0.152634):0.1370975); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr90881] END;