#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on October 08, 2026; 23:40 GMT TreeBASE (cc) 1994-2008 Study reference: Lü J., Suo H., Yi R., & Ma Q. 2015. Glyma11g13220, a homolog of the vernalization pathway gene VERNALIZATION 1 from soybean [Glycine max (L.) Merr.], promotes flowering in Arabidopsis thaliana. BMC Plant Biology, 15(232): 1-12. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18010] [ The following blocks are input data for analysis step 17020 ] BEGIN TAXA; TITLE TaxaForAnalysisStep17020; DIMENSIONS NTAX=31; TAXLABELS Arabidopsis_thaliana_AT1G16640 Arabidopsis_thaliana_AT1G49475 Arabidopsis_thaliana_AT1G49480 Arabidopsis_thaliana_AT3G06160 Arabidopsis_thaliana_AT3G06220 Arabidopsis_thaliana_AT3G18990_VRN1 Arabidopsis_thaliana_AT3G53310 Arabidopsis_thaliana_AT4G01580 Arabidopsis_thaliana_AT4G34400 Arabidopsis_thaliana_AT5G18000 Arabidopsis_thaliana_AT5G18090 Arabidopsis_thaliana_AT5G57720 Glycine_max_Glyma01g11755 Glycine_max_Glyma03g40651 Glycine_max_Glyma07g19395 Glycine_max_Glyma07g21160 Glycine_max_Glyma07g35040 Glycine_max_Glyma08g44640 Glycine_max_Glyma09g20150 Glycine_max_Glyma11g13220 Glycine_max_Glyma11g13231 Glycine_max_Glyma11g13350 Glycine_max_Glyma12g05250 Glycine_max_Glyma12g05261 Glycine_max_Glyma14g08630 Glycine_max_Glyma14g08641 Glycine_max_Glyma17g36471 Glycine_max_Glyma17g36490 Glycine_max_Glyma20g01130 Glycine_max_Glyma20g24211 Glycine_max_Glyma20g24222 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M33647] TITLE 'F2 Glyma11g13220, a homolog of the vernalization pathway'; LINK TAXA = TaxaForAnalysisStep17020; DIMENSIONS NCHAR=794; FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Arabidopsis_thaliana_AT1G16640 ----------------------------------------------------MADTGEVQFMKPFISEKSS--KSLEIPLGFNEY-FPAP-FPITVDLLDYSGRSWTVRMKKRGEKVF-LTVGWENFVKDNNLEDGKYLQFIYDRDRTFYVIIY-GHNMCSEYRD-FPQVAVE-------------------------------------------------------VDDYENGEEEED-----------------------------------------------------------------------------------------------------------GDDQDKHQ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT1G49475 ---------------------------MRNMHTNRRSPGPITSAATQRRLKPEPEPTVKKFIKIILLSRII-EKMMKVPARFVR--FGPK-LTDNVTLQTPVGFKRSIRIKRIGDEVW-FEKGWSEFAEAHSLSDGHFLFFHYEGDSCFRVVIF-DVSASEIEYP---------------------------------------------------------------LDDTDDNREEVMDDDEQG----------------------------------------------------------------------------------------------------------------------------------------------------------FTGFESSDDDGEVVDMDELLKKK-----------------KKKPRVNIKS--------------E---------------------------------------------------------------------------------------------------------------------------------------------------------------------NVIILD-------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT1G49480 ------------------------------------------------------------------------MQMDSAQNQFNKR---------ARLFEDPELKDAKVIYPSNPESTEPVNKGY--------------------GGSTAIQSFF------------KESKAEE-------------------------------------------------------TPKVLKKRGRKKKNPNPEE---------------------------------------------------------------------------------------------------------------------------------------------------------VNSSTPGGDDSENRS--KFYESA-----------------SARKRTVTAE--------------ERERAVNA---------------------------------------------------------AKTFEP--TNPYFRV-----VL-RPSYLYRGCIMYLPSGFAEKYLS--GISGFIKLQLGE--KQWPVR----CLYKAGRA-KFS-QGWYEFTLENNIGEG-DVCVFELLRTRDFVLEV------------------TAFRVNEYV------------------------------------------------------------------------------------------------------------------------ Arabidopsis_thaliana_AT3G06160 ------------------------------------MWATKSRRCAVHTSSMASGDVLPRFFTVFLSHCSS--ESMVIPRSYYNL-LPRP-LPKTAILIGTGGRFWKVAMTSKQEQVY-FEQGWGNFVADNQLKEGEFLTFVFDGHKSYEVSIYGRGDCKETRAV-IQVEEISDDTE---------------------------------------------------DDNVSLHSPSNVSLDSLS-----------------------------------------------------------------------------------------------------NDSHHSTS-----NVSLRSLSNDS-----------------------------LHGDAEIESDSEYSP--ENLPSA-----------------SISVESVEVV--------------NPTTSRQR--------------------------------------------------------SYKRKTI--ENPHLYLDDPNNVCFETCLKLRKFELLVHAQLVKDYGL--IFSDNVDYIDGYG-K-------LTAKTTKWADQRVCINKWQKICERNQFTEN-DSILCEILRNEDKVVYAIKI---------------HIFRDAAAST----------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT3G06220 -------------------------ATGGCTTCCGGTGATGTACTTCCTCGCTTCTACACTGTCTTTCTTTCCTGTGTCAGTTCC------AACTCTTTGCTGATACCAAGGTCTTAC-TACGAACATTTACCGCGTCGTTTACCCAAAACAGC-GATTCTCACG-GGAACTGGTGGAAGAGTTTGGAAAGTAGCAATGATG-----------------AGCAAGCGAGAGCAAGTGTATTTGGCACGAGGCTGGGAAAATTTCGTGGCCGATAACGAGCTAAAAGATGGAGAGTTCTTGACGTTTGTTTTTGATGGGTACAAAAGTTATGAAGTAAGTATCTAT--GGTCGCGG-----TAGCTGCAAAGAGAC-------------------------GCGAGCAGTCGTTCA--TGTTGAAGAGATCTCTGATGAGTCAGAAAGTGACAACGATTCTCTTGGTAGCCTT---------------------------------------------------------GTTGAC--GTAACAC-----CCATGCCAGCGGAAGAGAACTCTGAT--GATACTGAAGGTG-ACAATGATTCTTGTGATA-GCGTTGTTGACGTAACTC---CCATGCCAGTGGAAGAGATAAGTGATGCAAGTGATAGTGACTATTATTAA----------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT3G18990_VRN1 -------------------------------------------------------MPRPFFHKLIFSSTIQ-EKRLRVPDKFVSK-FKDE-LSVAVALTVPDGHVWRVGLRKADNKIW-FQDGWQEFVDRYSIRIGYLLIFRYEGNSAFSVYIF-NLSHSEINYH-STGLMDSAHNHFKR------------------------------------------------ARLFEDLEDEDAEVIFPSSVYPSPLPESTVPANKGYASSAIQTLFTGPVKAEEPTPTP-------------------------------------------------------------KIPKKRGR-----KKKNADPEE-------------------------------INSSAPRDDDPENRS--KFYESA-----------------SARKRTVTAE--------------ERERAINA---------------------------------------------------------AKTFEP--TNPFFRV-----VL-RPSYLYRGCIMYLPSGFAEKYLS--GISGFIKVQLAE--KQWPVR----CLYKAGRA-KFS-QGWYEFTLENNLGEG-DVCVFELLRTRD---FVLKV---------------TAFRVNEYV------------------------------------------------------------------------------------------------------------------------ Arabidopsis_thaliana_AT3G53310 --------------------------------------------------MADDSELYPRFFKVFLVESAS--ESLMIPLPFMAF-LADP-LPKTVKLQGLGGKLWTVSLKKISGAAY-LTRGWPKFAEEHELKNGEFMTFVYDGHRTFEVSVF-DRWGSKEVRA-EIQAIPLSDSD---------------------------------------------------SDSVVEDEKDSTDVVEDD-----------------------------------------------------------------------------------------------------DDEDEDED---------------------------------------------EDDDGSFDEDEEISQ--SLYPID-----------------EETATDAAVF--------------EGNLDVEA--------------------------------------------------------------L--TNPHFPT-----TL-----KNRIYELLIPANVVKDNNL--EFGSSIKYIDGEG-T-------LVGLRGKWADKRVCFKGWDRICRRNRLKKHQDTVECELLHDDQKMVHSIRV---------------HVLRRDA-------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT4G01580 -------------------------------MVITRNMKARATSVSHRQSQQDPESPVKKFFKLVLPSTMK-DKMMRIPPRFVKL-QGSK-LSEVVTLVTPAGYKRSIKLKRIGEEIW-FHEGWSEFAEAHSIEEGHFLLFEYKKNSSFRVIIF-NASACETNYP---------------------------------------------------------------LDAVHIIDSDDDVIEIT------------------------------------------------------------------------------------------------------GKEFDTEH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------KSKKRP--RDIEFDK-----IL--------------------------HDVDVMQVLKEE-------------------------------EEDKRVLRG--------------------------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT4G34400 ---------------------------------------------MASSMASNDFQLPPRFFTVFVSHFSS--EFMVIPVSYYDH-IPHR-FPKTVILRGPGGCSWKVATEIKDDEVL-FSQGWPKFVRDNTLNDGDFLTFAYNGAHIFEVSIFRGYDACKEISEVTELEEEEEDSVISLS-----------------------------------------------SEDTDTGAKSEMKNTVPE--------------GRDKGKSKVEVVEDSDDDEEEDSVYSESSEETETDTDSEFKVAKPTIPKSQKKGKKKEQVVESSDDEED------------------EEEDSDSD-----YIETFGQLD-------------------------------IEENSISEEDSSYAPDKEDTATA----------------SFVKPKVANKVANL-----------KRKEAAKK---------------------------------------------------------RKKVDPMIKNPERYLDDPKNIHFETNVKNRLYELLVHAQLVKDYCL--RFGDYVNYIDRFG-K-------LSAKTAKWKDQRVCIKRWMRICKRNKLKKE-DRILCELLR-KGTFVYAIKL---------------HVIRGKDL------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT5G18000 -----------------------------------------MVKNKAFFGQIMEERDNPAFFKILRREDHSTEMMRMIPHHLIRS-ISDKSSSFKMVLRVPWGRSWQVKISKNPNFHYMEDRGWNQFVNDNGLGENEYLTFTHEANMCFNVTIF-EADGTEMLRP-RKTITSSSGRNKR-------------------------------------------------EERKSIYKDVKKEEEIESWS---------------------------------------------------------------------------------------------------ESSHPCHK---------------------------------------------TAESTSGRLTQKQELNLRKKEAD-----------------KTEKSKTSKK--------------KKVETVSN---------------------------------------------------------DSEAGTSSLIPEFKL-----TI-KKSHL---LFLGIPKKFVDMHMP--TETTMFKIHYPRGKKSWDVTYVVTDVQS-----RFS-GGWSRLAKELGLLVG-DVCTFKLIKPTEMRVKVSKE------------------------------------------------------------------------------------------------------------------------------------------------ Arabidopsis_thaliana_AT5G18090 -------------------------------------------MKNKAFGQIMDDAENPGFFKILRSADLSSEIMRGIPLNFIKS-ISEEELSAKMLLKVSWGSSWPIKICRNPSFYFMEKKGWDQFLSDNGLGNDEFLTFTHQGNMCFTVDIY-QIDGKELLTP-RRSATIASSSGRNKR-----------------------------------------------EQRNNIYKDVKEEEDIESWS---------------------------------------------------------------------------------------------------ESSYPGHK---------------------------------------------TAESTGRRQRLSLSNKKAKETEK-----------------SKKKKMKV----------------ESISYDSQ---------------------------------------------------------DDSLSL---VPEFTL-----TI-KKSYL---IFLGIPKMFEELHMP--TEATMFKIHDPEGKRSWDVMYKFSNNQT-----RFC-AGWIRLAKELGLEIG-DVCTFTLIKPTEMLVRVSK------------------------------------------------------------------------------------------------------------------------------------------------- Arabidopsis_thaliana_AT5G57720 ------------------------------------------------MVLENGFPPYPDFLKIFNSHEDS--QLLVIPRSYNRY-YPNP-LPQTAVLKNPEGRFWNVQWTKSQEVIISLQEGWVKFVKDNGLIDRDFLLFTYDGSRSFWVRIHRNGLPLEPTAPIKIQEISDDEDETNGD-----------------------------------------------GDPHMEEEGDTDENMIVS-----------------------------------------------------------------------------------------------------LSLGSSDE---------------------------------------------VGDDDDDDYDTAICDEVNKASGS-----------------SKKGRVTRKHR-------------DDSLASIT---------------------------------------------------------PQIFLADPNNPFFIS--------TSSCSRR--ILVIARQVIKDYGL--NFDGTVNLIDGFG--------ELTRKVGKWKD-RVVIYKWNEMFTRNKVKQG-DVIICEIIREED-VVRSIKV---------------HFVKN---------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma01g11755 ----------------------------------------------------------MHFFRIIIAPSLQ-EGKLMLPNKFVEK-YGEG-LPNTLFLKAPNGAEWKLTLEKRDDKMW-FQKGWREFAKHHSLDHGHLLLFRYQRTSHFQVHIF-DGSGLEIEYP-LGKVEGKMTSNYQ-------------------------------------------------KNKRPNGEKLEYEFLQPC-----------------------------------------------------------------------------------------------------MGSRKCVK---------------------------------------------VDNTMKPKLGCSAC---ASYRQK-----------------GQRKTKMTTT--------------EHVTAFDR---------------------------------------------------------ASYFRP--CNPSFLV-----VI-YPSNARSRGPLNFPSKFCKKHIDLRKNRGDINLEVLNG-RVWHARYRIRTAETRRRF-ELS-SGWKTFAEDNNLKVG-DVCTFELIPATK---LTFQV---------------HIFRVSANSNCSTSQGSIDIF------------------------------------------------------------------------------------------------------------ Glycine_max_Glyma03g40651 ---------------------------------------------MESALPSHGDKSLQEFFKVFLLRTGS--TKLQIPTSFTKF-FNGV-LPLKVTLVDHDRKSWDVYLEKTEGCLV-FKDGWQQFAKEKVLEDGDFLVFQYDGRSTFNVKIF-SKTGCRKVAA-PASSAKIEPTV---------ILDEDSDQRCSK----------------------------------EIQCGRKRKQSPPS------------------------------------------------------------------------------------------------------------------LKTNEES---------------------------------VLEGPCPSEGARFKSK-RVYEEK-------------------DDHNEKKP--------------DPTKCVPL--------------------------------------------------------------Q--NSHHFQI-----YFNAPWRLKK---VEIPRSVLRKTNI--KLMSKISLRDENG-KLWPAS--IISIKKEYRH-FLG-GGWNDFRRSYNIQEG-DRCDFEFVVDKANAAQELLV----------------RVRSKCSFGWVDCK------------------------------------------------------------------------------------------------------------------ Glycine_max_Glyma07g19395 ---------------------------------------------------MSSQGYGVHFFKVILESTLR-KGQLKVPSSFTRR-HWQG-ISNPVILSLPNGTKRKVYWLKDGCDVW-FSNGWREFAKKLRLDVSHFVVFRYEGNSCFNVIIF-GKSALEVEYP-SSH-----------------------------------------------------------DSNVEVEEINDTDFSAKF-----------------------------------------------------------------------------------------------------GEDHTSKS-----SKKRKIIP--------------------------------KEEDDDDDDEPKHCKKDSGFDYS----------------------KQKNGGWFYFLILFRSSQGDFKRRIKM----------------------------------------------------FHEKVKEMFYA--ENEHFTC-----LI-QKTYTER-DLLILPMEFSKPYLH--KEGNATLFVDD-G-RSWDVG---LRVNHYGQL-TFS-RGWRKFSLENKLKVG-DVCGFELHNSEK---FSFEV---------------SIYRLEENSSTPIFKGSIIYLP----------------------------------------------------------------------------------------------------------- Glycine_max_Glyma07g21160 -------------------------------------------------------MPRPCFDKLVLPTTLQ-SRQLRIPDNFLRK-YGTQ-LSTIATLTVPDGSVWPIGLKKADNRIW-FVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIF-NLSTSEVNYQ-SAMRNHNEGSC--------------FANYHHI------------------------------FDEMEDVDSLGLSDLSPQ---------YLTPGALQSKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSAFSLKDANSQGNQSTRDIGVQFNAVEFKRSTEELKLRYSNSNEEAVNKTAK-----KKRKSEPCKFLFLFKFSLSGNVKDDIFLLITNTMCGTIDGEEPSGENEEEAEMRY--RFYESA-----------------SARKRTVTAE--------------ERERAINA---------------------------------------------------------SKTFEP--TNPFCRV-----VL-RPSYLYRGCIMYLPSTFAEKNLN--GVSGFIKLQLSNG-RQWSVR----CLYRGGRA-KLS-QGWFEFTVENNLGEG-DVCVFELLRMKE---VVLQV---------------TVFRVTEDAGLLNQLPMQQQQQSPNISHTKLLNPHLQHRISTTKLIRN--------------------------------------------------------------------------------- Glycine_max_Glyma07g35040 --------------------------------------------------------------------------------MFSRR-SSGRVASGRVALE--NGVPLPLLPDPKANLQW----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------DEVKPLSG------------------------------------------------------------------KPYWHS-----VL-SPTNLQPRYNL-MPGMNLRSKLP--SNEVPTILIYG-G-KSWDMV----YYGQSKQK-AFGVTGWKKFVIDNCLRVG-DACIFELMESSDKK-VILEV---------------QILRGDIPSEWLGNEMIIGQGNEMIIGQENEMIIGHSRENPIVLN------------------------------------------------------------------------------------ Glycine_max_Glyma08g44640 --------------------------------------MTSKLNHRDDGSNGDSASKPIHFLRIMHPDNLL-QGKLRLPAEFVNK-YGKH-LSNTMFLKLPNGAEWRVNLEKRDGRVW-FQEGWKKFVEHHSLAHGHLLVFKYDGTFHFHVLIF-DPSANEIDYP-VNKANHKRVR----------------------------------------------------ISSEEIQPPTTCKTS--------------------------------------------------------------------------------------------------------GNKRSNSN---------------------------------------------LQDNAFHQKVRDHKG--RYESPS-----------------------------------------EGKRNMEA--------------------------------------------------------------A--GSISFTV-----RM-KSSSKQH---MYLPKDSLKGYIK--GGEQYVKLLVGE--RSWRVK--LVHYKNRSSC-FFS-ANWPAFARENDLKEG-DACWFQLLNSSDDIVMNV-----------------TISREGH-------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma09g20150 MLQINISSSQEAIALFFFFFISFSALLSQKSHFAFTLRSHLRIHNMTSARNKHPLPPAVHFVKIILTTSLA--DGILLPKKFTRK-YGDG-MSNPVFLKPADGTEWKIHYTKHGGEIW-FQKGWKEFATYYSLDHGHLLFFEYEGTSHFDVHIF-DSSALEIDYP-SHGTHEGKDNLVEISDDSVEILGEQFSCQNTRGSSPQP------------------------CKKMKNSITTNVERSPNVVNLHQHVPTISNSSQKATFMKQMLDEDDGIGIFNTEYPKVEQSTSTALKKASTFRSEHPFFRLVMKPSFINGYYLEIPPQFAERYLKKTHAIVILEIL---DGRTWSVI-------CSATRLTEGWQKFASENNLNVGDVCVFELIQKIQGLC-FKVSIYQGAEEPICPISQVHPST-----------------NWTGGTSSQRSSQVKSRSKLKILTIRYIALKR---------------------------------------------------------ASKFTS--ENPFFMV-----TLTTKLKSIITRDVHVPMDFVRKHLV--NVKQKLMMIHFRK-KLWPVR--FVVRESSTVSGNLS-TGWAWFVRENELQRG-DVCIFELFNREDATFDA------------------HVFRGHREVMH---------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma11g13220 ---------------------------MRDFSFHSNDLLILQGNNRERWKMDYHQDNPAVFFTTIKNT-----KQLKVPEEFLKH-LNKD-LWSNSVLIGPSGDKWQVTILKKGNNVY-MDNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIF-GGNGLERLCR-KEAREEQAATP--------QFFDLPFSNKASI------------------------------SDGCEIKKTRQEQASAPSLA-----RTNKSKQRKTFVGSSHLHESNSYKKDLPSSNKGTLSKGCEIKKTRQEQAATPSFLRPNKIKQRKTSARSSNLNESKSCQEGQERVATLSWAR--TNNYNSTQ-----RKTSAGSSH-------------------------------LHESNSSKEDLPFSNK-ASLSKD-----------------FPKPQSSINI--------------ECSEACKL---------------------------------------------------------AESFTS--RNPHWKH-----LL-TKCNLER-CILLIAAEFARKYIP--EALEQIYLWNSEG-KSWEVRVHYFRNRNTWYA-AFK-RGWERFVRDNKLMKG-DTCIFEVEEEQGHWSV-------------------HIFRTGCAPH----------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma11g13231 ------------------------------MFHCSSITITMGDFSLHENNMDYHQDNPAVFFTIINNT-----KLLKVPEEFLKH-LNED-LSSNAVLIGPSGDKWQVTILKKGNNVY-MNNGWSQFLKDNSVVLDEFLLFTYHGGNCFYVQIF-CGNGLERLCL-KETRQEQAVTP--------QFLDLTFSNKALI------------------------------SDGCEIKKTSQEQASTPSLV---------------------------------------------------------------------------------------------------RITNKSKQ-----RKTSAGSFLH------------------------------HESKSSCQEDLPFSNK-ALLSKD-----------------FPKPLSSIKF--------------ETSEACKL---------------------------------------------------------AESFTS--RNPHWKH-----LM-TKCNVEDHCTLHIATQFACKYIP--EVVKQIILWNSEG-KFWEVEVTCLRYQNKRYT-RFT-TGWGKFVRDNKLMKG-DTCIFELEDENHMSV--------------------HIFRTSV-------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma11g13350 --------------------------------------------------MTTGAERYPDFFKVFLPERHS--ERMLIPNAFVRLPQSQGRIPEDVILRNISGRVWQVKTRYIGEKLY-FDDGWNAFHEENCLGHADFLVFKHDRSNEFKVLILESSTQCQKPVV-KMEEENEQEQA-----------------AAQH------------------------------AEDCDIEEEEDSSSKDEN----------------------YDDDSDDSDFDDDEESKEEFGA---------------------------------------------------------GFKSQSHH-----RRACKRE---------------------------------TASSSNPDAEDPLPE--YVFDPE---------------------MCIQRENHFFKAKLYRTRPNELHIPGNS---------------------------------------------------------IQEFSL--TFPENYV-----TL-ICCQPCQRKD--IPMNELGDYHH--NLTQQTHIR---K-KYQEVT----GRVCRWQD-RICIKGWASFSKRNKIERN-DTCFCEVISGEDQVVRTLEV---------------HVARRR--------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma12g05250 -------------------------------------------------------MPHPSFHKLLLPSTVQPNQQLRLPDNFMRK-YGGE-LLPIVTLSVPDGSVWRVGLKKADNKYW-FLDGWKEFVKHYSISIGYLLVFKYEGKSSFSVHIF-NLATSEINYQ-SATRSSNEGLH--------------FTNRLKL------------------------------FEEIEDEDSIEISDSSPS---------HLAPSSLQNQALTGSVDKMMPGKSYTPPALQNLFNGSKLNSINWGEGGNAHSSRIANSLDNRLTRDIGLQFNAVEFKRSTEELKLRASME--ERMKKTTR-----KKRKSVCASADG----------------------------QDPSAEHEEEVEMRL--RFYESA-----------------SARKRTVTAE--------------ERERAINA---------------------------------------------------------AKAFEP--PNPFCRV-----VL-RPSYLYRGCIMYLPSCFAEKHLN--GVSGFIKLQISNG-RQWPVR----CLYRGGRA-KLS-QGWFEFSLENNLGEG-DVCVFELLRMKE---VVLQV---------------TVFRVIEDVGLLSPPLQQNQNMSSAKMLNTPLQQHLTSTKMVRNQQQVHS------------------------------------------------------------------------------- Glycine_max_Glyma12g05261 ----------------------MYLYQVSFQFLFHCSSITMGDFSLHENNMDYHQDNLAVFFTIIKNT-----KLLKVPEEFLKH-LNED-LWSNEVLIGPSGDKWLVTIWKKGNDVY-MKNGWSLFLKDNSVVLDEFFLFTYHGGNCFHVQIF-GGNGLERLCL-EETRQEQAAIP--------QFFDLPFSNNASL------------------------------FDGYEIKKTRQEQASIPSLA---------------------------------------------------------------------------------------------------RTKNKSKQ-----RKTSAGSLH-------------------------------HHESKSCQEDLPFCNK-ALLSKD-----------------FPKPMSSIKI--------------ESSEACKL---------------------------------------------------------VESFTS--RDPHWKH-----LM-TKCNVEDHCTLHIATEFACKYIL--EAVKQIILRNSEG-KFWEVEVACLRYQNKRYT-QI-------YDRMGKIRA---------------------------------------------------------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma14g08630 --------------------------------------MVGQNCDGCRSWEEDIYWSHFQFLHFVQFLHADYDQHLALPKTFSDN-LKKK-LPENVTLKGPGGVMWNIGMTTRDDTLY-FGHGWEQFVKDHCLKENDFLVFKYNGESQFDVLIFNGWSLCEKAGSYFVRKCGHTEID---------------------------------------------------HAGGSLNKKRDTDNDSLEEGNIPS-NAGVECALHEKSAHVNGTKEPIDVPPETPPTENTFNAGVESSGVEQFTPDGGVTLAAVPSETANGKRIRNIVS---------------------AVKHVHTK-----RKGRPAKWHVRERT--------------------------LDWVAALEAEPVSASRSGTYEV------------------YKSNRRPVTD--------------DETRKIES---------------------------------------------------------LAKAAC--TDDSIYV-----VM-KPTHVYKRFFVSIRGTWIGKHIS--PSSQDVILRMGKG--EWIARYSYNNIRNNG---GLT-GGWKHFSLDSNLEEG-DACVFKPAGQINNTFVIDM----------------SIFRVVPETVPLTPMSRGTRTGTRTGTGRRGRKPATMKSIQTQLSSP---------------------------------------------------------------------------------- Glycine_max_Glyma14g08641 ---------------------------------------------MGCDCGGKLNVRKPHFYEVYSSAFSS--HRLRLPDGFVCY-MEGR-AYGSVSLTGPSGNIWTVQLIKQDNDLF-FHHGWSTFVVDHRLECGELLVFRYEGHLHFTVQIF-DKDACEKEAA-FHSECSQSSSDFDNIKGQKRDRKENSSLHIVVDGVPKKMRGSTNENQELELGVGKELLLYDVVRPISMFRENEETSKTCSANDVPVPFHMENSNEDEEADILYRSGNDDHHYILSGVSLSNVSAHDEKKVAQSFISSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNL--KGEHWTVNSVPTTRVHTSHTLCGGWMAFIRGNNIKVGDICIFELVRECELRVRIAEVGKDGRDCQVGNVAMTRPSA------GHAVSSKCMSMNPKVNSKCIRKVDLSDKKWSKIGQETILSIDLKKSSRASNTSKKMGLCPQSKAAHKKLAAPRRHRVEDELSSQAKAGLRMLFALDEQRVAQAFSS--PFPSFVK-----IM-KKFNVSGSYTLKIPYQFSAAHLP--TYKTEVTLRNSRG-GCWTVN-SVPDAKGRTVH-TFC-GGWMAFVRDNDINFG-DTCIFELVAQCEMQVYISGVGKEGLDHQNGHLKLTNRLANVPSTC----------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma17g36471 ------------------------------------------------------MMRKPHFYEVYSSAFSS--HRLKLPDGFVCH-MEGR-TYGSVSLTGPSGKTWTVQLIKQENDLF-LHHGWSTFVVDHQLECGELLVFRYEGHLHFTVQVF-DKDACEKEAA-FHSECSQSSKI--------MSTNENQELELGV---------------------GKELLRYEIVRPISMFRENEETSKACSANDVPVPFHMDNSKEDEETAILYRSGKDDHRYILSGVSLSNVSAHDEKKVSQSFISSFPYFVRIMKSFNVSGSYTLNIPYQFSMAHLPNCKIKIILHNL--KGEHWTVNSVPTTRVHTSHTLCGGWMAFVRGNNIKVGDICIFELVHECELRVRIAEVAKDGSDCQVGNLAITRPSA------GHAVTSRCMPMNPKVNSKCIRKVDLSDKKWSKIGQETILSIDLKKSSRASNTSKKMGLCPQSKAAHKKLAAPRRHRVDDELSSQAKAGLRMLFALDEQRVAQAFTS--PFPSFVK-----IM-KKFNVSGSYTLKIPYQFSAAHLP--TYKTEVTLRNSRG-ECWTVN-SVPDAKGRTVH-TFC-GGWMAFVRDNDINFG-DTCIFELVAQCEMHVYISGVGKEGLDHQNGHLKLTNRLANVPSTC----------------------------------------------------------------------------------------------------------------------- Glycine_max_Glyma17g36490 --------------------------------------MVGQNCGGCRSWEEDIYWSHFQFLHFVQFLRADYDQHLALPKAFSDN-LKKK-LPENVTLKGPGGVVWNIGMTTRDDTLY-FVHGWEQFVKDHCLKENDFLVFKYNGESQFDVLIFNGGSLCEKAGSYFVRKCGHTGIE---------------------------------------------------HAGGSLNKKRDTDNNSLEEGNIPPSNAGVECALHEKSVHANGTKEPIDVPPETPPTEKTFNAGVESSGVEQFTPDGGVTLVAVPSETANGKRIRNIVS---------------------AVKHVQTK-----RRGRPAKVHVRERT--------------------------LDWVAALEASEPISTSRSGTYEV-----------------YKSNRRPVTD--------------DETKMIES---------------------------------------------------------LAKAAC--TEDSIYV-----VM-KPSHVYKRFFVSMRGTWIGKHIS--PSSQDVILRMGKG--EWIARYSYNNIRNNG---GLT-GGWKHFSLDNNLEEG-DACVFKPAGQMNNTFVIDM----------------SIFRVVPETVPLTPMSRGTGRRGRKQATMKSIQTQLSPP------------------------------------------------------------------------------------------ Glycine_max_Glyma20g01130 -------------------------------------------------------MPRPCFHKLVLPTTLQ-SRQLRIPDNFLRK-YGTQ-LSTIATLTVPDGSVWRIGLKKADNRIL-FVDGWQDFVQHYSIGVGYFLVFMYEGNSSFIVHIF-NLSTSEVNYQ-SAIRNRNEGSC--------------LANYHHI------------------------------FDEMEDVDSLDLSDLSPQ---------YLTPGSLQNKGCVGSVDQLTPGKSHTPALQNLFNGGSKLNRINWGDGGSAFSSKNANSQGNQSTRDIGVQFNANEFKRSTEELKLRYSNE--ETVNKTAK-----KKRKSEPYG-------------------------------EEPSGENEEEAEMRY--RFYESA-----------------SARKRTVTAE--------------ERERAINA---------------------------------------------------------SKTFEP--TNPFCRV-----VL-RPSYLYRGCIMYLPSCFAEKNLN--GVSGFIKLQLSNG-RQWSVR----CLYRGGRA-KLS-QGWFEFTVENNLGEG-DVCVFELLRTKE---VVLQV---------------TVFRVTEDAGLLNQPPMMQQQHIPNMSHTKLLNPHLQHRVSTTKLIRN--------------------------------------------------------------------------------- Glycine_max_Glyma20g24211 ----------------------------------------------------------MSFGLPSNKGFGKEDNCNRIPRSFVNK-CWEG-ISNPVLLLLPNGVEWKVKWKKLDADIL-LIEDWKEFAEFCSLDKDHLLVFEYLRKSQFLVVIF-DQNGLEMEYP-LMGGTLDGD-----------------------------------------------------EKGNSLCQHKRAKSPLPF-----------------------------------------------------------------------------------------------------SSSIKKVK-----GKTLTSYPSHGVR---------------------------TERAQSQRTKVEFSK--EFLAED--------------LERGGRGRGMMNAKRRCSNSNAL----KSSTALER---------------------------------------------------------AKAFRS--ENPFFIR-----EM-HPSYIHK-YIMVMPGNFLTEDQQ--KENDSVTLWISEE-RAWHVK--FYTNRSSGQI-NLS-TGWVDFVKDNNLKIG-NVCVFEQIKKTR---ISFRV---------------FIFRDGEESSPSNFSDSE-FRGCNNEVSENHFTLSIKPCQFYCMNVPKKFIRNHEMDGINEVTLQVGKRSWNVKLDCYGRFTSGLHDFMSQHNVEAGDVIHFELIDKKKFVFQVRVTRCISIDFELL-- Glycine_max_Glyma20g24222 -----------------------------------------MGWAFRLHFFVWPSTSDIHFFKRIEEDAIR-NGELRIPRSFVNK-CWEG-MSNPVVLLLRNGAEWKVKWKKLDVDVW-LIDDWKEFADFCCLDQDHLLVFKYMGKSRFQVVIF-YQNGLEMQYP-LMEET---------------------------------------------------------IDGNSLCQPKRAKSPLPFSSSIKKVKTNPRKEPSSYPGHDHDVKT--------------------------------------------------------------------------EPAQSQRR-----KVELSKKFHADD----------------------------LDDAKPKKRGGRRRRIMCSNSRA-----------------IKRDELLQDT--------------ESSTALER---------------------------------------------------------AKAFRT--DNPSFIR-----AM-GKSYIER-SVLFMPGNFITEDQQ--KEDDHVFLWISNE-RAWHVK--FYLSHSSGQI-LLS-IGWMDFVKDNNLKIG-NVCVFEQIKKPG---ISFRV---------------VIFRDPEESSPFKFPDSESRRFNNNKVSENHFTISIKPSQLCHMNVPKKFIKNHDIDNTKEVTLQVGKRSWNVTLDCYGRFTSGWSEFMSQCDLEAGDVCYFELIDKKKFVFEVRFKRCISID------ ; END; [ The following blocks are output data for analysis step 17020 ] BEGIN TREES; TITLE 'F2 Glyma11g13220, a homolog of the vernalization pathway'; LINK TAXA = TaxaForAnalysisStep17020; TREE 'PAUP_1' = [&R] (Arabidopsis_thaliana_AT3G06220:2.9721205,((Glycine_max_Glyma17g36490:0.057588,Glycine_max_Glyma14g08630:0.085924):0.573926,((Glycine_max_Glyma03g40651:1.083929,(Glycine_max_Glyma11g13350:0.99138,(Arabidopsis_thaliana_AT1G16640:0.866758,(Arabidopsis_thaliana_AT5G57720:0.832628,(Arabidopsis_thaliana_AT3G53310:0.634599,(Arabidopsis_thaliana_AT4G34400:0.483552,Arabidopsis_thaliana_AT3G06160:0.568463):0.291752):0.216352):0.070826):0.216699):0.253063):0.21261,(((Glycine_max_Glyma11g13220:0.153605,(Glycine_max_Glyma11g13231:0.081513,Glycine_max_Glyma12g05261:0.142113):0.124089):0.845748,((Arabidopsis_thaliana_AT5G18000:0.311298,Arabidopsis_thaliana_AT5G18090:0.315224):0.966581,(Glycine_max_Glyma07g35040:1.287611,(Glycine_max_Glyma14g08641:0.02548,Glycine_max_Glyma17g36471:0.060931):1.124421):0.047971):0.214494):0.080551,(((Arabidopsis_thaliana_AT3G18990_VRN1:0.153499,Arabidopsis_thaliana_AT1G49480:0.462139):0.116618,(Glycine_max_Glyma12g05250:0.180862,(Glycine_max_Glyma20g01130:0.025521,Glycine_max_Glyma07g21160:0.042407):0.227103):0.278549):0.743931,((Glycine_max_Glyma07g19395:0.930618,(Arabidopsis_thaliana_AT1G49475:0.46596,Arabidopsis_thaliana_AT4G01580:0.486704):0.629918):0.119882,((Glycine_max_Glyma20g24211:0.276136,Glycine_max_Glyma20g24222:0.240839):0.776622,(Glycine_max_Glyma09g20150:1.14295,(Glycine_max_Glyma01g11755:0.651615,Glycine_max_Glyma08g44640:0.817932):3.16542E-8):0.11307):0.227356):0.093695):0.322628):0.054445):0.788325):2.9721205); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr90882] END;