#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on January 13, 2026; 14:19 GMT TreeBASE (cc) 1994-2008 Study reference: Nolla-ardevol V., Peces M., Strous M., & Tegetmeyer H.E. 2015. Metagenome from a Spirulina digesting biogas reactor: analysis via binning of contigs and classification of short reads. BMC Microbiology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S18612] [ The following blocks are input data for analysis step 17440 ] BEGIN TAXA; TITLE TaxaForAnalysisStep17440; DIMENSIONS NTAX=14; TAXLABELS Methanobacterium_sp.gh Methanococcus_maripaludis Methanocorpusculum_parvum_ Methanoculleus_marisnigri_jr1 Methanolobus_oregonensis Methanopyrus_kandleri_av19 Methanosaeta_concilii 'Methanosarcina siciliae str.t4-m' 'Methanospirillum hungatei jf-1' Methanothermobacter_marburgensis Uncultured_archaeon_BinJ_contig06470_assemblyA Uncultured_archaeon_BinJ_contig11126_assemblyB Uncultured_archaeon_clone_JF980548_SwineManureDigester Uncultured_archaeon_cloneEF552_SolidWasteDigester ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M34852] TITLE Archaeal_16S_rRNA; LINK TAXA = TaxaForAnalysisStep17440; DIMENSIONS NCHAR=1553; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 1410 1420 1430 1440 1450 1460 1470 1480 1490 1500 1510 1520 1530 1540 1550 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Methanobacterium_sp.gh ------------------------------------GCTACTGCTATTGGGGTTCGATTAAGCCATGCAAGTCGAACGAACTCCTTCGAGGGTT----CGTGGCGAACGGCTCAGTAACACGTGGATAACCTACCCTTAGGACCGGTATAAC-CCTGGGAAACT---GGGGATAATCCCGGATAGATGATTCTTTCTGCAATGATGTTTCATTTAAATG--CTCCGG----------------CGCCTAAGGATGGGTCTGCGGCCGATTAGGTTGTTGGT-AGGGTAATGGCTTACCAAGCCGGTGATCGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAACCTCCGCAATGCGAGCAATCGCGACGGGGGGACCCCAAGTGCCACTCTTAAC------GGGGTGGCTTTTCTTAAGTGTAAAAAGCTTTTG-GAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCTAGTGGTAGCCATTTTTATTGGGCCTAAAGCGTTCGTAGCCGGTTTGATAAGTCTCTGGTGAAATCCTATAGCTTAACTGTGGGACTTGC---TGGAGATACTATTA-GACTTGAGGTCGGGAGAGGTTAGCGGTACTCCC----AGGGTAGGGGTGAAATCCTGTAATCCTGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGAACCTGACGGTGAGGGACGAAAGCC--AGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAACGATGTGGACTTGGTGT------TGGAATGGCTTCGAGCTGCTCCAGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGCGACAGCAGTATGATAGCCAGGTTGATGACCTTGCTTGACAAGCTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCCTTAGTTACCAGCGGATCC--TCCGGGATGCCGGGCACACTAAGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGACGACGGTAGGTCCGTATGCCCCGAATCCCCTGGGCAACACGCGGGCTACAATGGCTTGGACAATGGGTTCCGACACTGAAAGGTGGAGGTAATCCCCTAAACCAAGTCTTAGTTCGGATCGAGGGCTGTAACCCGCCCTCGTGAAGCTGGAATGCGTAGTAATCGCGTGTCATAATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGTTTGGATGAGGCTATAGTCTTT-CTGGTTATGGTCGAATCTGGGTTCTTTGAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGC---------------- Methanococcus_maripaludis --------------?TTCCGGTTGATCCCGCCGGAGGCCACTGCTATTGGGATTCGACTAAGCCATGCGAGTCTATGGTT---------TCGGC----CATGGCGGACGGCTCATTAAC?CGTGGTTAACATACCC?CAGGTGGGGGATAAC-CTTGGGAAACT---GAGGATAATACCCCATAGAAAAAGCAGTCTGGAACGATTCTTTTTCGAAAG---CATATG----------------CGCCT?A???TTGGACTGCGCTCGATTAGGTAGTTGGT-GGGGTAATGGCCCAC?AAGCCT?CGATCGGTACGGGCCTTGAGAGAGGAAGCCCGGAGATGGGGACTGAGACACGGCCC?AGGCCCTAC---GGG-GCGCAGCAGGCGCGAAACCTCCGCAATGCACGAAAGTGCGACGGGGG?ATCCCAAGTGCTCATGCACAG------CAT-GGGCTTTTATCAAGTGTAAACAGCTTGAG-GAATAAGGGCTGGGCAAGTTCGGTGCCAGCAGCCGCGGTAACACCGACGGCCCGAGTGGTGG???CTTTTATTGGGCCTAAAGCGTCCGTAGCCGGTCCAGTAAGTCCTTGTTTAAATCCTGCGGCTTAACCGCAG??CTGGC----AGGGATACTGCTG-??C?TGAGACCGGGAGAGGACAAGGGTACTTCA----GGGGTAGCGGTGAAATGTGTTGATCCTTGAAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGAC?AAAGCC--AGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAACTTTGCGAACTAGGTGT------TAGGTGGGCCC?GTGCCCATCTAGTGCCGAAGGGAAGCCGTTAAGTTCGCCGCCTGGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGG?????????TTTAATT??????AACGCCGGG?ATCTCACCAGGAGCGACAGCATGATGACGGCCAGG?TGACGACCTTGCCTGAAGCGCTGAGAGGTGG?GCATGGCCATCGTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTCAGGTAACGAGCGAGACCCGTGCCCTATGTTGCTACTTTTTCC---T?AGGGAGAAAGGCACTCATAGGG?ACCGCTGGCGCTAAGT?AGAGGA?GGAGCGG??AACGATAGGTCCGCATGCCCCGAATCTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCCGCAACCCTGAAAAGGGACGCAAATCTCCTAAACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGTGAAGCTGGAATCCGTAGTAATCGCAGTTCATAATACTGCGGTGAATGTGTCCCT?CTC??TGCACACACCG?C???CACACCACCCGAGTTGGGTTGAAGTGAGGCCTTGGCCT---TTGGCTAGGGTCGAACTTGGGCTCAGCGAGGG------------------------------------------------------ Methanocorpusculum_parvum_ AAAAGAAAATAGT??TTCTGGTTGATCCTGCCAGAGGCCATTGCTATCAGGGT?TGACTAAGCCATGCGAGTCGAGAGGT--GT-----AAGAC----CTCGGCATACTGCTCAGTAACACGTGGTTAACCTGCCCTAAGGTGGAGAATACT-CCCGGGAAACT---GGGGCTAATGCTCCATAGTGGATATGTCCTGGAATGGTATATCCTCGAAAG---ATCCGT----------------CGCCTTAGGATGGGACTGCGTCCGATTAGGTTGTTGGC-GGGGTAACGGCCCACCAAGCCATTGATCGGTACGGGTTGTGGGAGCAAGATCCCGGAGATGGATTCTGAGACATGAATC?AGGCCCTAC---GGG-GCGCAGCAGGCGCGCAAACTTTACAATGCGAGCAATCGTGATAAGGAAACCCTGAGTGCCTGTC---GA------TGC-AGGC?GTTCATATATCTAAATCATATGTG-AAGAAAGGGCAGGGCAAGACC?GTGCCAGCCGCCGCGGTAATACCGGCTGCTCGAGTGATGGC?ACTATTACTGGGTTTAAAGCGTCCGTAGCTTGACTGTTAGGTCTCTTGGGAAATCTTCACGCTCAACGTGAAGGCGTCT---AAGAGATACCGGCA-GTCTTGGAACTGGGAGAGGTAAACCGTACTTCG----GGGGTAGGAGTGAAATCTTGTAATCCTCGAGGGACGACCTATGGCGAAGGCAGTTTACCAGAACAGCTTCGACAGTGAGGGACGAAAGCT--GGGGGAGCAAACGGGATTAGATACCCCGGTAGTCCCAGCCGTAAACAATGTGCGTTAGGTGT-----GTCG-GTAACCACGTGTTACTGATGCGCCGAAGAGAAATCGTGAAACGCACCACCTGGGAAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGG?????????????AACGCCGGACATCTCACCGGATAAGACAGCTGAATGATTGTCAATCTGAAGGTTTTACATGACTAGCTGAGAGGAGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCGACAATTGCCAGCAGCATC--TCCGGATGGCTGGGGACATTGTCGGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGCAACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACGGGACAATGGGTAACAACACCGAAAGGTGCAGTCAATCTCCGAACCCCGCCCTTAGTTAGGATTGCGGGTTGCAACTCACCCGCATGAATCTGGAATCTGTAGTAATCGCGTTTCACTATAGCGCGGTGAATACGTCCCT?CTCCTTGCACACACCGCCCGTCAAACCATCCTAGTGGGGTTTGGATGAGTCCCT?GTC----TTTGCCGGGGTCGAATCTAGGTTCCGTGAGGAGGG--------------------------------------------------- Methanoculleus_marisnigri_jr1 ----------------TCTGGTTGATCCTGCCAGAGGTCACTGCTATCGGGGTTCGATTAAGCCATGCGAGTCGAGAGGG--TT-----CGGCC----CTCGGCGTACTGCTCAGTAACACGTGGATAACCTGCCCTAAGGAAGGGGATAAC-CCCGGGAAACT---GGGAATAATACCCTATAGGTTACAGATGCTGGAATGCTCTGTAACTCAAAG---TTCAGG----------------CGCCTTAGGATGGATCTGCGGCCGATTAGGTTGTTGTT-GGGGTAACGGCCCAACAAGCCAGTAATCGGTACGGGTTGTGGGAGCAAGAGCCCGGAGTTGGATTCTGAGACACGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGCAACCGTGATAAGGGAACCTCGAGTGCCTGTA---TA------TGC-AGGCTGTCCAGGTGTCTAAAACACACCTG-AAGAAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCACTTTTATTGGGCTTAAAGCGTTCGTAGCTGGGTTGTTAAGTCTCTTGGGAAATCCGGCGGCTCAACCGTCGGGCGTCT---AAGAGATACTGGCA-GTCTTGGAACCGGGAGAGGTGAGGGGTACTTCG----GGGGTAGGAGTGAAATCCTGTAATCCTCGAGGGACCACCTGTGGCGAAGGCGCCTCACCAGAACGGCTTCGACAGTGAGGGACGAAAGCT--GGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAACGATGTGCGTTAGGTGT-----ATCG-ACGACCACGAGTCGTCGAGGTGCCGAAGGGAAACCGTGAAACGTACCGCCTGGGAAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGGACTCAACGCCGGGAATCTCACCGGATAAGACAGCGGAATGATTGCCGGGCTGAAGACTCTGCATGACTAGCTGAGAGGAGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCAACAGTTGCCAGCATGATC--TCCGGATTGATGGGGACACTGTTGGGACCGCCTCTGCTAAAGAGGAGGAAGGAATGGGCAACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGGCAGGACAATGGGTATCGACACCGAAAGGTGGAGGCAATCTCCTAAACCTGTCCGTAGTTCGGATTGTGGGCTGTAACTCGCCCACATGAAGCTGGAATCTGTAGTAATCGCGTTTCAAAATAACGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGGGGTTTGGATGAGGCTGCGGTC----GTTGCCGCAGTCGAATCTAGGTTCCGCAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT Methanolobus_oregonensis --------------?TTCTGGTTGATCCTGCCAGAGGTCACTGCTATCAGTGTTCGACTAAGCCATGCGAGTCAAATGTTCTTC-----GTGAA----CATGGCGTACTGCTCAGTAAC??GTGGATAATCTGCCCTAAGGTCTGGCATAAC-{AG}CCGGGAAACT---GATGATAATTCCAGATGGACCATGGATACTGGAATGTTCTGTGGTCAAAAG---CTCCGG----------------CGCCTTAGGATGAATCTGCGGCCTATCAGGTTGTAGTG-GGTGTAACGTACCTACTAGCCGACGACGGGTACGGG?TGTGAGAGCAAGAGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGAAACCGCGATAAGGGGACACTGAGTGCCAGCATCTTA------TGT-TGGCTGTCCACATGTATAAATAGCATGTGTTAGCAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGGCCACTATTATTGGGTCTAAAGGGTCCGTAGCCGGTTTGATCAGTCTTCCGGGAAATCTGACAGCTCAACTGTTAGGCTTCC---GGGGGATACTGTCA-GGCTTGGGACCGGGAGAGGTAAGAGGTACTACA----GGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCAGTGGCGAAGGCGTCTTACCAGAACGGGTCCGACGGTGAGGGACGAAAGCT--GGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAACGATGCTCGCTAGGTGTCTGGGATGGTGCGACCGT------TTCAGGTGCCGCAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACTACAACGGGTGGAGCCTGCGGTTTAATTGG????AACGCCGGAAAACTCACCTGGGGCGACAGCAATATGTAGGTCAGGCTGAAGGTCTTACCTGAATCGCTGAGAGGA?GTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCCGTGCCCACTGTTGCCAGCATATCC--TTCGGGATGATGGGTACTCTGTGGG?ACCGCCGCTGCTAAAGCGGAGGAAGGTGCGGGCTACGGTAGGTCAGTATGCCCCGAATCTCCAGGGCTACACGCGGGCTACAATGGACGGGACAATGGGCTCCTACCCCGAAAGGGG?TGGCAATCTCACAAACCCGGCCGTAGTTCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGAATCCGTAGTAATCGCGTTTCAATATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCG?CAAACCACCCGAGTGAGGTATGGGTGAGGGCACAGACAA--AGTGCTGTGTTCGAACCTAAATTTCGCAAGGG------------------------------------------------------ Methanopyrus_kandleri_av19 --------------ACTCCGGTTGATCCTGCCGGAGGCCACCGCTATCGGGGTCCGACTAAGCCATGCAAGTCGAGGGCCGCCCGGCAATGGGGGCGGCCCGGCGGACGGCTCAGTAACACGTGGGTAACCTACCCTCGGGACGGGGATAACCCCGGCGAAAGT---GGGGCTAATCCCCGATAGGCGGGGCGGCCTGGAACGGTCCTCCGCCGAAAGGGCCCGGGCCCATGCCGCCCGGGTCCGCCCGAGGATGGGCCTGCGGCCGATTAGGTAGTTGGC-GGGGTAACGGCCCGCCAAGCCGATAATCGGTACGGGCGGTGAGAGCCGGAGCCCGGAGACGGGGACTGAGACAAGGCCCCGGGCCCTAC---GGG-GCGCAGCAGGCGCGAAACCTCCGCAATGCGGGCAACCGCGACGGGGGGACCCCGAGTGCCGTCGGGGCAAAGCCCCGG-CGGCTGTACCGGGGTGTAAAAAGCCCCGGGTAGAAAGCGGCGGGCAAGACCGCTGCCAGCCGCCGCGGTAATAGCGGCGCCGCAAGTGGTGGCCGCTTTTATTGGGCCTAAAGGGGCCGTAGCCGGTCCCGTGGGTCCCCGCCGAAAGCCCGCGGCTTAACCGCGGGAGTCGG---CGGGGAAACTGCGG-GACTTGGGACCGGGAGAGGCCGGAGGTACCCCC----GGGGTAGGGGTGAAATCCTGTCATCCCGGGGGGACCGCCAGTGGCGAAGGCGTCCGGCTGGAACGGGTCCGACGGTGAGGGCCGAAAGCC--GGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCGGCTGTAAACGATGCGGACTAGGTGT------TGGGGCGGCCACGAGCCGCCCCAGTGCCGTAGGGAAGCCGTTAAGTCCGCCGCCTGGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACCGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGAAACCTTACCGGGGGCGACAGCAGGATGAAGGCCAGGTTGACGACCTTGCCGGACGAGCTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTGCCGTGAGGTGTCCTGTTAAGTCAGGTAACGAGCGAGACCCCCGCCCGCAGTTGCCAGCGGGCCCCGTAAGGGGCGCCGGGCACTCTGCGGGGATCGCCGCCGTTAAGGCGGATGAAAGTGGGGGCGACGGCAGGTCCGTATGCCCCGAAACCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAATGGGATCCGACCCCGAAAGGGGGAGGAAATCCCCTAAACCCCGTCGTAGTTCGGATTGCGGGCTGCAACTCGCCCGCATGAAGGTGGAATCGGTAGTAACCGTGCCTCAGAATGGCACGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCGAGCCCCCCGGGGGCAAGCCCCCGGTCCGCAAGGGCTGGGGGCGAGCCCCCGGGGGGTGAGGGGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTC-- Methanosaeta_concilii --------------ATTCTGGTTGATCCTGCCAGAGGTTACTGCTATCGAGGTTCGACTAAGCCATGCGAGTCGAATGT---AG-----CAATA----CATGGCGAACTGCTCAGTAACACGTGGACAACCTGCCCTTAGGTTGGGTATAAA-CCCGGGAAACT---GGGTATAATACCCGATAGGTCTCGATTGCTGGAATGCATCGAGATTTAAAG---CTCCGG----------------CGCCTAAGGATGGGTCTGCGGCCTATCAGGTAGTAGTG-GGTGTAGCGTACCTACTAGCCTACGACGGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTAC---GGG-GTGCAGCAGGCGCGAAAACTTTACAATGCTGGCAACAGCGATAAGGGAACCTCGAGTGCCAGGTTACAA------ATC-TGGCTGTCGAGATGCCTAAAAAGCATTTCATAGCAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCGGCTCGAGTGGTAACCGTTATTATTGGGTCTAAAGGGTCTGTAGCCGGCCGGATAAGTCTCTTGAGAAATCTGGCAGCTTAACTGTCAGGCTTTC---AGGAGATACTGTCT-GGCTCGAGGCCGGGAGAGGTGAGAGGTACTTCA----GGGGTAGGGGTGAAATCTTGTAATCCTTGAAGGACCACCAGTGGCGAAGGCGTCTCACCAGAACGGACCTGACGGCAAGGGACGAAAGCT--AGGGGCACGAACCGGATTAGATACCCGGGTAGTCCTAGCCGTAAACGATACTCGCTAGGTGTCGGCCACGGTGCGACCGTTGTC------GGTGCCGTAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCTTGCGGTTTAATTGGATTCAACGCCGGAAATCTTACCGGGACCGACAGCAATATGAAGGCCAGGCTGAAGACTTTGCCGGATTAGCTGAGAGGTGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCCACAGTTGCCAGCGTACTC--TCTGGAGTGACGGGTACACTGTGGGGACCGCCGCTGCTAAAGCGGAGGAAGGAATGGGCAACGGTAGGTCAGTATGCCCCGAATATCCCGGGCTACACGCGAGCTACAATGGTTGGTACAATGGGTATCTACCCCGAAAGGGGACGGGAATCTCCTAAAACCAATCTTAGTTCGGATTGAGGGCTGCAACTCGCCCTCATGAAGCTGGAATCCGTAGTAATCGCGTTTCAACAGAACGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTAGGGTCTGAATGAGAGCGCTTTCT---TTGGAGGCGTTCGAATTTGGGCTTTGCAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT 'Methanosarcina siciliae str.t4-m' -------------------GGTTGATCCTGCCAGAGGTTACTGCTATCGGTGTTCGCCTAAGCCATGCGAGTCATATGTTCTTC-----GTGAA----CATGGCGTACTGCTCAGTAACACGTGGATAACCTGCCCTTGGGTCCGGGATAAC-CCCGGGAAACT---GGGGATAATACCGGATAACGCATATGTGCTGGAATGCTTTATGCGTCAAACGGATTCGTC----------------TGCCCAAGGATGGGTCTGCGGCCTATCAGGTAGTAGTG-GGTGTAATGTACCTACTAGCCGACAACGGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGAAACCGTGATAAGGGGACACCGAGTGCCAGCATCATA------TGC-TGGCTGTCCGGGTGTGTAAAATACACCTGTTAGCAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGATCGTGATTATTGGGTCTAAAGGGTCCGTAGCCGGTTTGGTCAGTCCTCCGGGAAATCTGATAGCTCAACTATTAGGCTTTC---GGGGGATACTGCCA-GACTTGGAACCGGGAGAGGTAAGAGGTACTACA----GGGGTAGGAGTGAAATCTTGTAATCCCTGTGGGACCACCTGTGGCGAAGGCGTCTTACCAGAACGGGTTCGACGGTGAGGGACGAAAGCT--GGGGGCACGAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAACGATGCTCGCTAGGTGTCAGGCATGGCGCGACCGTGTCT------GGTGCCGCAGGGAAGCCGTGAAGCGAGCCACCTGGGAAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACAACAACGGGTGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACAACTCACCGGGGACGACAGCAATATGTAGGCCAGGCTGAAGACCTTGCCTGAATCGCTGAGAGGAGGTGCATGGCCGTCGCCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCCGTGCCCACTGTTACCAGCATGTCC--TCCGGGACGATGGGTACTCTGTGGGGACCGCCGGTGTTAAATCGGAGGAAGGTGCGGGCCACGGTAGGTCAGTATGCCCCGAATTTCCCGGGCTACACGCGGGCTACAATGAATGGGACAATGGGTCCCTTCCCCGAAAGGGGTTGGTAATCTCACAAACCCATCCGTAGTTCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGAATCCGTAGTAATCGCGTTTCAATATAGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGTATGGGTGAGGGCACGGACTC--AGTGCCGTGTTCGAACCTGAATTTTGCAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTACGGGAATCTGCGGCTGGATCACTCAA- 'Methanospirillum hungatei jf-1' --------------ATTCTGGTTGATCCTGCCAGAGGCCACTGCTATCGGGGTTTGACTAAGCCATGCGAGTCGAGAGGT--GC-----AAGAC----CTCGGCGTACTGCTCAGTAACACGTGGACAATCTGCCCTGAAGAGGAGGATAAT-CCCGGGAAACT---GGGGGTAATACTCCATAGTTCGTGCTGACTGGAATGTTATGCGAACGAAAG---ATCCGT----------------CGCTTCAGGATGAGTCTGCGGCCGATTAGGTAGTTGTT-GGGGTAACGGCCCAACAAGCCTGTCATCGGTACGGGTTGTGGGAGCAAGAGCCCGGAGATGGATTCTGAGACACGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACCATGCGGGCAACCGTGATAAGGAAACCCCGAGTGCCAGCA---CA------GGC-TGGCTGTCCACCAGTGTAAATAACTGGTG-AAGAAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCGCTATTACTGGGCTTAAAGGGTCCGTAGCTGGATATACAAGTCCCTTGAGAAATCCGCCGGCTTAACCGGTGGGCGTTC---AGGGGAAACTGTAT-TTCTAGGGACCGGGAGAGGTGAGAGGTACTGCC----GGGGTAGGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCT--GGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCTGTAAACGATGCGCGTTAGGTGT-----GTCA-GTGACCACGTGTCACTGAGGTGCCGAAGGGAAACCGTGAAACGCGCCGCCTGGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAAGACAGCTGAATGATAGTCGGGATGAAGACTCTACTTGACTAGCTGAGAGGAGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTTAGTCAGGCAACGAGCGAGACCCACGCGAGCAGTTGCCAGCTTGACC--TTCGGGTTGATGGGGACACTGCTCGGACCGCCTCTGCTAAAGGGGAGGAAGGAATGGGCAACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTTTCGACACCGAGAGGTGAGGATAATCTCCTAAACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCATGAAGCTGGAATCCGTAGTAATCGCGTTTCAACATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGTCTTGATGAGGATGT-ATC----AGTGATATGTTCGAATCTGGGTTTTGCAAGGGGGGTTAAGTCGTAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT Methanothermobacter_marburgensis -------------AAGTCCGTTTGATCCTGGCGGAGGCTACTGCTATTGGGGTTCGATTAAGCCATGCAAGTCGAACGAACCTT-----GTGTT----CGTGGCGAACGGCTCAGTAACACGTGGATAACCTGCCCTTGGGACTGGGATAAC-CCCGGGAAACT---GGGGATAAACCTGGATAGGTGATGCGGCCTGGAATGGTGCTTCACCGAAACACCTTCGGG---------------GTGCCCAAGGATGGGTCTGCGGCCGATTAGGTAGTTGGT-AGGGTAACGGCCTACCAAGCCCATCATCGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGAACCTGAGACAAGGTTCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAACCTCCGCAATGCACGCAAGTGCGACGGGGGAACCCCAAGTGCCACTCTTAAC------GGGGTGGCTTTTCAGAAGTGTAAAAAGCTTCTG-GAATAAGGGCTGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTAGCCGCTTTTATTGGGCCTAAAGCGTCCGTAGCCGGTCTGATAAGTCTCTGGTGAAATCCCGCAGCTTAACTGTGGGAATTGC---TGGAGATACTATCATGACTCGAGGTCGGGAGAGGCTGGAGGTACTCCC----AGGGTAGGGGTGAAATCCTGTAATCCTGGGAGGACCACCTGTGGCGAAGGCGTCCAGCTGGAACGAACCTGACGGTGAGGGACGAAAGCT--AGGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTGGCCGTAAACGATGTGGACTTGGTGT------TGGGATGGCTTCGAGCTGCCCCAGTGCCGAAGGGAAGCTGTTAAGTCCACCGCCTGGGAAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGCGACAGCAGTATGATGGCCAGGTTGATGACCTTGCCTGACGAGCTGAGAGGAGGTGCATGGCCGCCGTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTCAGGCAACGAGCGAGACCCACGCCCTTAGTTACCAGCGGGACCCTTTGGGGTTGCCGGGCACACTAAGGGGACCGCCAGTGATAAACTGGAGGAAGGAGTGGACGACGGTAGGTCCGTATGCCCCGAATCCCCTGGGCAACACGCGGGCTACAATGGCCTGGACAATGGGTTCCGACACTGAAAGGTGGAGGTAATCCCCTAAACCAGGTCGTAGTTCGGATCGAGGGCTGTAACTCGCCCTCGTGAAGCTGGAATGCGTAGTAATCGCGTGTCATTATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGCTTGGATGAGGCCACAGTAT---TTTGCTGTGGTCGAATCTGGGTTCTTTGAGGAGGGCGAAGTCGTAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT Uncultured_archaeon_BinJ_contig06470_assemblyA -------------------GGTTGATCCTGCCAGAGGTTACTGCTATTGGTGTTCGACTAAGCCATGCAAGTCATATGTTCCTC-----GTGAA----CATGGCATACTGCTCAGTAACACGTGGATAACCTG--CTTGGGTCTGGGATAACCCCCGGGAAACTGGGGGGGATAATACTGGATAACGCATATGTGCTGGAATGCTTTATGCGTAAAACGGATTCGTC----------------CGCCCAAGGATGGGTCTGCGGCCTATCAGGTAGTAGTG-GGTGTAATGTACCTACTAGCCAACAACGGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTACGGGGGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGAAACCGTGATAAGGGAACACCGAGTGCCAGCATCATA------TGC-TGGCTGTCCAGATGTGTAAACTACATCTGTTAGCAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGACCGTTATTATTGGGTCTAAAGGGTCCGTAGCCGGTTTGGTCAGTCCTCCGGGAAATCTGATAGCTTAACTGTTAGGCTTTCGGGGGGGGATACTGCCA-GGCTTGGAACCGGGAGAGGTAAGAGGTACTACAGGGGGGGGTAGGAGTGAAATCTTGTAATCCCTGTGAGACCACCTGTGGCGAAGGCGCCTCACCAGAACGGGTTCGACAGTGAGGGACGAAAGCTGGGGGGGAGCAAACCGGATTAGATA-CCGGGTAGTCCCAGCCGTAAACTATGCGCGTTAGGTGT-----ATCG-GTGACCACGAGTTACCGAGGTGCCGAAGGGAAACCGTGAAACGTGCCGCCTGGGAAGTACGGCCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGGACTCAACG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Uncultured_archaeon_BinJ_contig11126_assemblyB ----------------TCTGGTTGATCCTGCCAGAGGTCACTGCTATCGGGGTTCGATTAAGCCATGCGAGTCGAGAGGG--TT-----CGGCC----CTCGGCGTACTGCTCAGTAACACGTGGATAACCTGCCCTAGGGAAGGGGATAATCCCCGGGAAACT---GGGGATAATACCCTATAGGTTACAGATGCTGGAATGCTCTGTAACCCAAAG---TTCCGG----------------CGCCCTAGGATGGATCTGCGGCCGATTAGGTTGTTGTTGGGGGTAATGGCCCAACAAGCCAGTAATCGGTACGGGTTGTGGGAGCAAGAGCCCGGAGTTGGATTCTGAGACACGAATCCAGGCCCTAC---GGGCGGGCAGCAGGCGCGAAAACTTTACAATGCGGGCAACCGTGATAAGGGAACCTCGAGTGCCTGTA---AA------TGC-AGGCTGTTCAGATGCCTAAAACACATCTG-GAGAAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCACTTTTATTGGGCTTAAAGCGTTCGTAGCTGGGTTGTTAAGTCTCTTGGGAAATCTGGCGGCT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Uncultured_archaeon_clone_JF980548_SwineManureDigester ----------------TCTGGTTGATCCTGCCAGAGGTCACTGCTATCGGGGTTCGATTAAGCCATGCGAGTCGAGAGGG--TT-----CGGCC----CTCGGCGTACTGCTCAGTAACACGTGGATAACCTGCCCTAGGGAAGGGGATAAT-CCCGGGAAACT---GGGGATAATACCCTATAGGTTACAGATGCTGGAATGCTCTGTAATCAAAAG---TTCCGG----------------CGCCCTAGGATGGATCTGCGGCCGATTAGGTTGTTGTT-GGGGTAATGGCCCAACAAGCCAGTAATCGGTACGGGTTGTGGGAGCAAGAGCCCGGAGTTGGATTCTGAGACACGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGCAACCGTGATAAGGGAACCTCGAGTGCCTGTA---AA------TGC-AGGCTGTTCAGATGCCTAAAACACATCTG-GAGAAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCGGCTCGAGTGGTGGCCACTTTTATTGGGCTTAAAGCGTTCGTAGCTGGGTTGTTAAGTCTCTTGGGAAATCTGGCGGCTTAACCGTCAGGCGTCT---AAGGGATACTGGCA-ATCTTGGAACCGGGAGAGGTGAGGGGTACTTCG----GGGGTAGGAGTGAAATCCTGTAATCCTCGAGGGACCACCTGTGGCGAAGGCGCCTCACCAGAACGGCTTCGACAGTGAGGGACGAAAGCT--GGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAACTATGCGCGTTAGGTGT-----ATCG-GTGACCACGAGTTACCGAGGTGCCGAAGGGAAACCGTGAAACGTGCCGCCTGGGAAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGGACTCAACGCCGGGAAGCTCACCGGATAGGACAGCAGAATGATTGCCGGGCTGAAGACCCTGCATGACTAGCTGAGAGGAGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCAAGACCCACGCCAACAGTTGCCAGCATGGTC--TCCGGACTGATGGGGACACTGTTGGGACCGCCTCTGCTAAAGAGGAGGAAGGAATGGGCAACGGTAGGTCAGCATGCCCCGAATTATCCGGGCTACACGCGGGCTACAATGGGCAGGACAATGGGCATCGACACCGTGAGGTGGAGGCAATCTCCTAAACCTGTCCTTAGTTCGGATTGTGGGCTGAAACTCGCCCACATGAAGCTGGAATCTGTAGTAATCGCGTTTCAAAATAACGCGGTGAATTTGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGGGGTTTGGATGAGGTTACGGTT----GTTGCCGTAGTCGAATCTAGGTTCCGCAAGGGGGGTT------------------------------------------------- Uncultured_archaeon_cloneEF552_SolidWasteDigester ----------------TCCGGTTGATCCTGCCAGAGGTTACTGCTATTGGTGTTCGACTAAGCCATGCAAGTCATATGTTCCTC-----GTGAA----CATGGCATACTGCTCAGTAACACGTGGATAACCTGCCCTTGGGTCTGGGATAAC-CCCGGGAAACT---GGGGATAATACTGGATAACGCATATGTGCTGGAATGCTTTATGCGTAAAACGGATTCGTC----------------CGCCCAAGGATGGGTCTGCGGCCTATCAGGTAGTAGTG-GGTGTAATGTACCTACTAGCCAACAACGGGTACGGGTTGTGAGAGCAAGAGCCCGGAGATGGATTCTGAGACATGAATCCAGGCCCTAC---GGG-GCGCAGCAGGCGCGAAAACTTTACAATGCGGGAAACCGTGATAAGGGAACACCGAGTGCCAGCATCATA------TGC-TGGCTGTCCAGATGTGTAAACTACATCTGTTAGCAAGGGCCGGGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCGGCCCGAGTGGTGACCGTTATTATTGGGTCTAAAGGGTCCGTAGCCGGTTTGGTCAGTCCTCCGGGAAATCTGATAGCTTAACTGTTAGGCTTTC---GGGGGATACTGCCA-GGCTTGGAACCGGGAGAGGTAAGAGGTACTACA----GGGGTAGGAGTGAAATCTTGTAATCCCTGTGAGACCACCTGTGGCGAAGGCGTCTTACCAGAACGGCTTCGACAGTGAGGGACGAAAGCT--GGGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCAGCCGTAAACTATGCGCGTTAGGTGT-----ATCG-GTGACCACGAGTTACCGAGGTGCCGAAGGGAAACCGTGAAACGTGCCGCCTGGGAAGTACGGTCGCAAGGCTGAAACTTAAAGGAATTGGCGGGGGAGCACCACAACAGGTGGAGCCTGCGGTTTAATTGGACTCAACGCCGGGAAGCTCACCGGATAGGACAGCAGAATGATTGCCGGGCTGAAGACCCTGCATGACTAGCTGAGAGGAGGTGCATGGCCGTCGTCAGTTCGTACTGTGAAGCATCCTGTTAAGTCAGGCAACGAGCGAGACCC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ; END; [ The following blocks are output data for analysis step 17440 ] BEGIN TREES; TITLE Archaeal_16S_rRNA_BS500; LINK TAXA = TaxaForAnalysisStep17440; TREE Tree1 = [&R] ((Methanococcus_maripaludis:0.16517,Methanopyrus_kandleri_av19:0.1663)0.820:0.013085,((Methanobacterium_sp.gh:0.0365,Methanothermobacter_marburgensis:0.02874)1.000:0.07292,((Methanosaeta_concilii:0.08826,(Methanolobus_oregonensis:0.04084,'Methanosarcina siciliae str.t4-m':0.01608,(Uncultured_archaeon_BinJ_contig06470_assemblyA:0.00202,Uncultured_archaeon_cloneEF552_SolidWasteDigester:0.00312)1.000:0.04517)0.988:0.03316)0.998:0.04878,(Methanocorpusculum_parvum_:0.11255,'Methanospirillum hungatei jf-1':0.07473,(Methanoculleus_marisnigri_jr1:0.01269,(Uncultured_archaeon_BinJ_contig11126_assemblyB:0.00206,Uncultured_archaeon_clone_JF980548_SwineManureDigester:0.00434)0.992:0.0164)1.000:0.02905)1.000:0.03405)0.988:0.10356)1.000:0.013085):0.05858; [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr93233] END;