#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 10:54 GMT

TreeBASE (cc) 1994-2008

Study reference:
Susko E., Field C., Blouin C., & Roger A. 2003. Estimation of Rates-Across-Sites
Distributions in Phylogenetic Substitution Models. Systematic Biology, 52(5): 594-603.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1019]

[ The following blocks are input data for analysis step 1769 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1769;
        DIMENSIONS NTAX=22;
        TAXLABELS
            _Pseudomonas_aeruginosa
            Arabidopsis_thaliana
            Bartonella_bacilliformis
            Bradyrhizobium_japonicum
            Caulobacter_crescentus
            Chlamydia_trachomatis
            Chromatium_vinosum
            Cucurbita_sp.
            Dictyostelium_discoideum
            Drosophila_melanogaster
            Eschericia_coli
            Euglena_gracilis
            Homo_sapiens
            Neisseria_gonorrhoea
            Plasmodium_falciparum
            Rhizobium_meliloti
            Rhodobacter_sphaeroides
            Saccharomyces_cerevisiae
            Schizosaccharomyces_pombe
            Thermus_thermophilus
            Treponema_pallidum
            Trypanosoma_brucei
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M599]

	TITLE Eubacterial_Chaperonin_60;
	LINK TAXA = TaxaForAnalysisStep1769;
	DIMENSIONS NCHAR=513;
	FORMAT DATATYPE=Protein SYMBOLS= "A C D E F G H I K L M N P Q R S T V W Y" MISSING=? GAP= -;

MATRIX
[                                     10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510   ]
[                                      .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .   ]
_Pseudomonas_aeruginosa       AKEVKFGDSARKKMLVGVNVLADAVKATLGPKGRNVVLDKSFGAPTITKDGVSVAKEIELKDKFENMGAQLVKDVASRPTDAAGDGTTTATVLAQAIVNEGLKAVAAGMNPMDLKRGIDKATVAIVAQLKELAKPCADTKAIAQVGTISANSDESIGQIIAEAMEKVGKEGVITVEEGSGLENELSVVEGMQFDRGYLSPYFVNKPDTMAAELDSPLLLLVDKKISNIRE-MLPVLEAVAKAGRPLLIVAEDVEGEALATLVVNNMRGIVKVAAVKAPGFGDRRKAMLQDIAILTGGTVISEEVGLSLEGLEHLGNAKRVVINKENTTIIDGAGIEARVLQIRKQIEETTSDYDREKLQERLAKLAGGVAVIKVGAATEVEMKEKKAPVEDALHATRAAVEEGVVPGGGVALVRALQAIEGLK-QNVGIALLRRAVESPVRQIVANAGDEPSVVVDKVKQGSYGFNAATGVYGDMIEMGILDPAKVTRSALQAAASIGGLMITTEAMVAEIVE
Arabidopsis_thaliana          AKEIKFGVEARALMLKGVEDLADAVKVTMGPKGRNVVIEQSWGAPKVTKDGVTVAKSIEFKDKIKNVGASLVKQVANATNDVAGDGTTCATVLTRAIFAEGCKSVAAGMNAMDLRRGISMAVDAVVTNLKSKARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITIQDGKTLFNELEVVEGMKLDRGYTSPYFITNQKTQKCELDDPLILIHEKKISSINS-IVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKANLQDLAALTGGEVITDELGMNLEKLSMLGTCKKVTVSKDDTVILDGAGIEERCEQIRSAIELSTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGILPGGGVALLYAARELEKLPTQKIGVQIIQNALKTPVYTIASNAGVEGAVIVGKLLEQDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLLTTTEAVVVDLPK
Bartonella_bacilliformis      AKEVKFGRDARERLLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELENKFENMGAQMLREVASKTNDIAGDGTTTATVLGQAIVQEGVKAVAASMNPMDLKRGIDAAVEAVVADLFKKAKKIQTSEEIAQVATISANGAEDIGKMIADAMEKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNSEKMMVDLDDPYILIHEKKLSNLQS-LLPVLEAVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAVLTSGQVISEDVGIKLENLEMLGRAKKVHVSKETTTIVDGAGINARVSQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAVEEGIVPGGGTPLLRAAKALS-IKGQEAGIGIIRRALQAPARQIAHNAGEEAAVIVGKVLENCFGYNTATAQFRDLISFGIVDPVKVVRSALQNAASIASLLITTEAMVAEVPK
Bradyrhizobium_japonicum      AKEVKFGVDARDRMLRGVDILHNAVKVTLGPKGRNVVLDKSFGAPRITKDGVTVAKEIELEDKFENMGAQMVREVASKSADAAGDGTTTATVLAAAIVREGAKSVAAGMNPMDLKRGIDMAVEAVVADLVKNSKKVTSNEEIAQVGTISANGDAEIGKFISDAMKKVGNEGVITVEEAKSLETELEVVEGMQFDRGYISPYFVTNADKMRVEMDDAYVLINEKKLSQLNE-LLPLLEAVVQSGKPLVIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQAISEDLGIKLENLNMLGRAKKVMIDKENTTIVSGAGIEARVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEGILPGGGVALLRASEHLKGIRTQKTGVEIVRKALSYPARQIAINAGEDGSVIVGKILEKDYGYDSQTGEYGNLVSKGIIDPTKVVRVAIQNAASVAALLITTEAMVAEVPK
Caulobacter_crescentus        AKDVYFSSDARDKMLRGVNILANAVKVTLGPKGRNVVIEKSFAAPRTTKDGVSVAKEIELADKFENLGAQMIREVASKTNDKAGDGTTTATVLAQAIVQEGLKSVAAGMNPMDLKRGIDKAVAIAIEDIKTSSKKVTTNAEIAQVGTISANGDKEVG-EIAKAMDKVGNEGVITVEEAKTAETELDVVEGMQFDRGYLSPYFITNADKMEVQLEEPLILLSRKKLSSLQP--LPVLEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLRVAAVKAPGFGDRRKAMLEDIAILTGAQVVSEDIGIKLENLEMLGRAKKVSITKDDTTIVDGVGIEARIAQIKRQIEDTTSDYDKEKLQERLAKLAGGVAVIRVGGSTEVEVKEKKDRVDDALNATRAAADEGIVPGGGTALLKASKASA-VVGQTAGIAIVRRALQAPIRQIAENAGVEGSIVVGKILENDFGFNAQTEQYVDLVVDGVIDPAKVVRTALQNAASVAGLLITTEAAIVVSPQ
Chlamydia_trachomatis         AKNIKYNEEARKKIQKGVKTLAEAVKVTLGPKGRHVVIDKSFGSPQVTKDGVTVAKEVELADKHENMGAQMVKEVASKTADKAGDGTTTATVLAEAIYTEGLRNVTAGANPMDLKRGIDKAVKVVVDQIKKISKPVQHHKEIAQVATISANNDAEIGNLIAEAMEKVGKNGSITVEEAKGFETVLDVVEGMNFNRGYLSSYFATNPETQECVLEDALVLIYDKKISGIKD-FLPILQQVAESGRPLLIIAEDIEGEALATLVVNRIRGGFRVCAVKAPGFGDRRKAMLEDIAILTGGQLISEELGMKLENLAMLGKAKKVIVSKEDTTIVEGMGLEARCESIKKQIEDSSSDYDKEKLQERLAKLSGGVAVIRVGAATEIEMKEKKDRVDDAQHATIAAVEEGILPGGGTALIRCIPTLEAFLPEQIGARIVLKALSAPLKQIAANAGKEGAIIFQQVMSRSEGYDALRDAYTDMLEAGILDPAKVTRSALESAASVAGLLLTTEALIAEIPE
Chromatium_vinosum            AKDVKFGGDARVRMMEGVNILANAVKVTLGPKGRNVVLEKSFGAPTVTKDGVSVAKEIELKDKFENMGAQMVKEVASKTSDIAGDGTTTATVLAQAMVREGLKAVAAGMNPMDLKRGMDKAVEAATEELKKLSKPCPRPMAIAQVGTISANSDDSIGTIIAEAMEKVGKEGVITVEDGTSLQNELDVVEGMQFDRGYLSPYFINNQQSQSAELDAPYILLYDKKISNIRD-LLPVLEGVAKAGKPLLIIAEDVEGEALATLVVNTIRGIVKVCAVKAPGFGDRRKAMLQDIAILTGATVISEEVGLSLEKLTDLGTAKRVQVGKDETTIIDGSGIKARCEQIRAQVEETSSDYDREKLQERLAKLAGGVAVIKVGAATEIEMKEKKARVEDALHATRAAVEEGIVPGGGVALVRAIAAVKDLK-QDVGIAIARRAMEEPLRQIVANAGEEPSVILHKVAEGTFGYNAANGEYGDMVEMGILDPTKVTRSALQNSCSVAGLMITTEAMIADEPK
Cucurbita_sp.                 AKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRTVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTKAIFTEGCKSVASGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTMDNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLIIIYEKKIS-SINAVVKVLELALKKQRPLLIVSEDVESEALATLILNKLRAGIKVCAIKAPGFGENRKAGLQDLAVLTGGQVITEELGMNLEKLDMLGSCKKITISKDDTVILDGAGIEERCDQIRSGIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEVVVVELPK
Dictyostelium_discoideum      GKDIKFGAECRALMLRGVEQLAAAVEVTLGPKGRNVILDQPFGQPKITKDGVTVAKHIEFADRHINLGAQLVKGVASSQNDQSGDGTTTATILTRAIFAEGCKAVAAGMNPMDLWRGINSAVEKVVGELKTISRPISSTEEISQVATISANGDKVIGNLIANAMEKIGKEGVITVQDGKTLKDELEIIEGMKFDQGFISRYFINDAKEQKCEFDDPVILVVDGKISNVQQ-LVPILELVHSKHKKLVIIADNIEGDALSALIFNKMRG-LQVCAVKAPGFGDLKRVNLQDIGVISGAQVISEELGVRLEDITMLGSAKKITIDSDSTIILDGAGIQERVELIRESLTRTTSDYDKTQLETRLAKIGGGVAVIRVGGASEVEVGEKKDRITDALNATKAAVEEGIVPGGGTALLYSTLALKKIKMQTIGVKIVRDALLIPCKTIANNAGVEGSVVIGRLLSKRYGYNAQKGVYENMIQAGIIDPTKVVRTALIDAASVASLMTTTEAMVVEIKK
Drosophila_melanogaster       AKDVRFGPEVRAMMLQGVDVLADAVAVTMGPKGRNVIIEQSVGLAKITKDGVTVAKSIELKDKFQNIGAKLVQDLANNTNEEAGDGTTTATFLARAIAKEGFEKISKGGNPVEIRRGVMLAVETVKDNLKTMSRPVSTPEEIAQVATISANGDREIGNSVSEAMKKVGRDGVITVKDGKTLTDELEVIEGMRFDRGYISPYFINSSKGAKVEFQDALLLLSEKKISSVAEHHSPLWRLASRRRKPLVIIAEDIDGEALSTLVVNRLKIGLQVAAVKAPGFGDNRKSTLTDMAT-SGGIVFGDDSLVKLEDVSDLGQVGEVVITKDDTLLLKGKGVLRRANQIRTKIEDTTSEYEKEKLQERLARLASGVA-LRVGGSSEVEVNEKKDRVHDALNATRAAVEEGIVPGGGRPLLRCIEKLEGVETQKLGVEIVRRALRMPCMTIAKNAGVDGAMVVAKVENQAYGYDAKG-EYGNLIEKGIIDPTKVVRTAITDASGVASLLTTAEAVVTEIPK
Eschericia_coli               AKDVKFGNDARVKMLRGVNVLADAVKVTLGPKGRNVVLDKSFGAPTITKDGVSVAREIELEDKFENMGAQMVKEVASKANDAAGDGTTTATVLAQAIITEGLKAVAAGMNPMDLKRGIDKAVTAAVEELKALSVPCSDSKAIAQVGTISANSDETVGKLIAEAMDKVGKEGVITVEDGTGLQDELDVVEGMQFDRGYLSPYFINKPETGAVELESPFILLADKKISNIRE-MLPVLEAVAKAGKPLLIIAEDVEGEALATAVVNTIRGIVKVAAVKAPGFGDRRKAMLQDIATLTGGTVISEEIGMELEKLEDLGQAKRVVINKDTTTIIDGVGIQGRVAQIRQQIEEATSDYDREKLQERVAKLAGGVAVIKVGAATEVEMKEKKARVEDALHATRAAVEEGVVAGGGVALIRVASKL--ADLQNVGIKVALRAMEAPLRQIVLNCGEEPSVVANTVKGGDYGYNAATEEYGNMIDMGILDPTKVTRSALQYAASVAGLMITTECMVTDLPK
Euglena_gracilis              GKDILFGVDARVKMLAGVNRLSQAVSVTLGPKGRNVVIEQPFGAPKITKDGVTVAKAIEFKDSFENLGAQLVRQVANTTNEIAGDGTTTSTVLANTIFSEGYKAVTQGTSPVDMKRGIDRAVEVVLQSLTEQSKTIVSKEEVTQVATISANGDVEIGQLIGHAMEKVGKAGVITVSDGKTLDTELEVVEGMSLDRGYISPYFVTNAKTQKVEIEDAFILLCQKKVSTIQQ-ILPVLEHIAKANRPLVIIADDVDSEALATLIINKINGKLKVCAVKAPGFGDNKTNMLHDVAIFTGGEVYNEELGMNLEQHRILGFAKKVSVGKDQTIILNGAGVEERKELIQGMLGKTDSSYEKEKLNERLAKLSGGVAVIKVGGASDVEVGEKKDRVTDALNATRAAVSEGIVPGGGAALLYASSALAELAAQKTGVRIVMSAIKLPAITIVKNAGGEGAVVIHQLLAEKQGYDAQQGKYVNMFEAGIIDPAKVVKTALVDAASVAGLMITTEAAITDIPA
Homo_sapiens                  AKDVKFGADARALMLQGVDLLADAVAVTMGPKGRTVIIEQSWGSPKVTKDGVTVAKSIDLKDKYKNIGAKLVQDVANNTNEEAGDGTTTATVLARSIAKEGFEKISKGANPVEIRRGVMLAVDAVIAELKKQSKPVTTPEEIAQVATISANGDKEIGNIISDAMKKVGRKGVITVKDGKTLNDELEIIEGMKFDRGYISPYFINTSKGQKCEFQDAYVLLSEKKISSIQS-IVPALEIANAHRKPLVIIAEDVDGEALSTLVLNRLKVGLQVVAVKAPGFGDNRKNQLKDMAIATGGAVFGEELTLNLEDPHDLGKVGEVIVTKDDAMLLKGKGIEKRIQEIIEQLDVTTSEYEKEKLNERLAKLSDGVAVLKVGGTSDVEVNEKKDRVTDALNATRAAVEEGIVLGGGCALLRCIPALDSLTPQKIGIEIIKRTLKIPAMTIAKNAGVEGSLIVEKIMQSSVGYDAMAGDFVNMVEKGIIDPTKVVRTALLDAAGVASLLTTAEVVVTEIPK
Neisseria_gonorrhoea          AKDVQFGNEVRQKMVNGVNILANAVRVTLGPKGRNVVVDRAFGGPHITKDGVTVAKEIELKDKFENMGAQMVKEVASKTNDVAGDGTTTATVLAQSIVAEGIKYVTAGMNPTDLKRGIDKAVAALVEELKNIAKPCDTSKEIAQVGSISANSDEQVGAIIAEAMEKVGKEGVITVEDGKSLENELDVVEGMQFDRGYLSPYFINDAEKQIAGLDNPFVLLFDKKISNIRD-LLPVLEQVAKASRPLLIIAEDVEGEALATLVVNNIRGVLKTVAVKAPGFGDRRKAMLQDIAILTGGVVISEEVGLSLEKLDDLGQAKRIEIGKENTTVIDGFGIEARVAEIRQQIETATSDYDKEKLQERVAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEGVVAGGGVALLRARAALENLH-QEAGVQIVLRAVESPVRQIVANAGGEPSVVVNKVLEGKYGYNAGSGEYGDMIGMGVHDPAKVTRSALQHAASIAGLMLTTDCMIAEIPE
Plasmodium_falciparum         SKDIRFGSDARTAMLTGCNKLADAVSVTLGPKGRNVIIEQSFGSPKITKDGVTVAKSIEFNNKLANLGAQMVKQVAANTNGKAGDGTTTATILARSIFQQGCKAVDSGMNPMDLLRGINKGVEKVLEYLNSIKKDVTTTEEIFNVASISN-GDKNIGQLIADTMKKVGKEGTITVTEGKTLQHELEIVEGIKFDRGYISPYFINN--SQKVELDKPYILIHEKKISTVKS-LLPVLEHVLQNQSSLLVIAEDVDSDALATLIVNKLRLGLKICAVKAPGFGEHRKALIHDIAVMTGAKVITEETGLKLDDVSYLGKAKSINVTKDSTLIMEGEGINERCESIRNAIKMNTSDYEKEKLQERLAKITGGVALIKVGGISEVEVNEIKDRIQDALCATKAAVEEGIVPGGGSALLFASKELDSVQTQRVGVNIIKDACKAPIKQIAENAGHEGSVVAGNILKDKIGFNAQEGKYVDMIESGIIDPTKVVKTAISDAASIASLMTTTEVAIVDFKD
Rhizobium_meliloti            AKEVKFGRSGREKMLRGVDILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELEDKFENMGAQMVREVASKTNDIAGDGTTTATVLAQAIVREGAKAVAAGMNPMDLKRGIDLAVAEVVKDLLAKAKKINTSDEVAQVGTISANGEKQIGLDIAEAMQKVGNEGVITVEEAKTAETELEVVEGMQFDRGYLSPYFVTNPEKMVADLEDAFILLHEKKLSNLQA-MLPVLEAVVQTGKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLEDIAILTGGTVISEDLGIKLESLDMLGRAKKVSITKENTTIVDGAGIEGRVAQIKAQIEETTSDYDREKLQERLAKLAGGVAVIRVGGATEVEVKEKKDRIDDALNATRAAVQEGIVPGGGVALLRSSVKIT-VKGQDAGVNIVRRALQSPARQIVENAGDEASIVVGKILEKNFGYNAQTGEYGDMIAMGIIDPVKVVRTALQDAASVASLLITTEAMIAELPK
Rhodobacter_sphaeroides       AKDVKFDTDARDRMLRGVNILADAVKVTLGPKGRNVVIDKSFGAPRITKDGVSVAKEIELSDKFENMGAQMVKEVASRTNDEAGDGTTTATVLAQAIIKEGLKAVAAGMNPMDLKRGIDLATSKVVEAIKAAARPVNDSHEVAQVGTISANGEAQIGRFIADAMQKVGNEGVITVEENKGLETEVEVVEGMQFDRGYLSPYFVTNADKMTAELDDVYILLHEKKLSSLQP-MVPLLEAVIQSQKPLLIIAEDVEGEALATLVVNKLRGGLKIAAVKAPGFGDRRKAMLQDIAILTGGQVISEDLGMKLENIDMLGRAKKISINKDNTTIVDGNGIDARVAQIRNQIEETSSDYDREKLQERVAKLAGGVAVIRVGGMTEVEVKERKDRVDDALNATRAAVQEGIVVGGGVALIQGGKALDGLTGQNAGITIVRRALEAPLRQIAQNAGVDGSVVAGKVRESNFGFNAQTEEYGDMFKFGVIDPAKVVRTALEDAASVASLLITTEAMIADKPE
Saccharomyces_cerevisiae      HKELKFGVEGRASLLKGVETLAEAVAATLGPKGRNVLIEQPFGPPKITKDGVTVAKSIVLKDKFENMGAKLLQEVASKTNEAAGDGTTSATVLGRAIFTESVKNVAAGCNPMDLRRGSQVAVEKVIEFLSANKKEITTSEEIAQVATISANGDSHVGKLLASAMEKVGKEGVITIREGRTLEDELEVTEGMRFDRGFISPYFITDPKSSKVEFEKPLLLLSEKKISSIQD-ILPALEISNQSRRPLLIIAEDVDGEALAACILNKLRGQVKVCAVKAPGFGDNRKNTIGDIAVLTGGTVFTEELDLKPEQIENLGSCDSITVTKEDTVILNGSGIQERIEQIKGSIDITTTSYEKEKLQERLAKLSGGVAVIRVGGASEVEVGEKKDRYDDALNATRAAVEEGILPGGGTALVKASRVLDEVVVQKLGVDIIRKAITRPAKQIIENAGEEGSVIIGKLIDEYKGYDASKSEYTDMLATGIIDPFKVVRSGLVDASGVASLLATTEVAIVDAPE
Schizosaccharomyces_pombe     AKDLKFGVDARASLLTGVDTLARAVSVTLGPKGRNVLIDQPFGSPKITKDGVTVARSVSLKDKFENLGARLVQDVASKTNEVAGDGTTTATVLTRAIFSETVRNVAAGCNPMDLRRGIQLAVDNVVEFLQANKRDITTSEEISQVATISANGDTHIGELLAKAMERVGKEGVITVKEGRTISDELEVTEGMKFDRGYISPYFITDVKSQKVEFENPLILLSEKKVSAVQD-ILPSLELAAQQRRPLVIIAEDVDGEALAACILNKLRGQLQVVAIKAPGFGDNRRNMLGDLAVLTDSAVFNDEIDVSIEKPHHLGSCGSVTVTKEDTIIMKGAGVNDRCEQIRGVMADPNLEYEKEKLQERLAKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVLPGAGTSFVKASLRLGDIPTQKLGVEIVRKAITRPAQTILENAGLEGNLIVGKLKELYIGYDIAKDRFVDLNEIGVLDPLKVVRTGLVDASGVASLMGTTECAIVDAPE
Thermus_thermophilus          AKILVFDEAARRALERGVNAVANAVKVTLGPRGRNVVLEKKFGSPTITKDGVTVAKEVELEDHLENIGAQLLKEVASKTNDVAGDGTTTATVLAQAIVREGLKNVAAGANPLALKRGIEKAVEAAVEKIKALAIPVEDRKAIEEVATISAN-DPEVGKLIADAMEKVGKEGIITVEESKSLETELKFVEGYQFDKGYISPYFVTNPETMEAVLEDAFILIVEKKVSNVRE-LLPILEQVAQTGKPLLIIAEDVEGEALATLVVNKLRGTLSVAAVKAPGFGDRRKEMLKDIAAVTGGTVISEELGFKLENLSMLGRAERVRITKDETTIVGGKGIEARINGIKKELETTDSEYAREKLQERLAKLAGGVAVIRVGAATETELKEKKHRFEDALNATRAAVEEGIVPGGGVTLLRAISAVEELIKEATGAKIVRRALEEPARQIAENAGYEGSVIVQQILAETYGFNAATGEFVDMVEAGIVDPAKVTRSALQNAASIGALILTTEAVVAEKPE
Treponema_pallidum            ANELLFNEEARKKLLSGVEQISSAVKVTLGPKGRNVLLEKGYGAPTVTKDGVSVAKEVELEDPFENMGAQLLKEVATKTNDVAGDGTTTATVLAYSMVREGLKAVAAGMTPLELKRGMDKAVAIAVDDIKQNSKGIKSNEEVAHVASVSANNDKEIGRILASAIEKVGNDGVIDVDEAQTMETVTEFVEGMQFDRGYISSYFVTDRDRMETVYENPYILIYDKSISTMKD-LLPLLEKIAQTGRPLLIIAEDVEGEALATLVVNSLRGTLKTCAVKAPGFGDRRKEMLEDIAILSGGQVISEDLGLKLESIALLGQAKSVKVDKENTTIIDGSGIKDRIEQIKKQIEASTSDYDSEKLKERLAKLSGGVAVIKIGAVTEVEMKEKKHRVEDALNATRAAIEEGIVAGGGLALIQAAAALEKADLEAVGFKIVRRALEEPIRQISENAGIDGAVVAEKAK-EKIGFDASKMEWVDMIKVGIIDPAKVTRSALQNAASVSGLLLTTECAIAAIGQ
Trypanosoma_brucei            AKDIRFGTEARQSMLKGVQRAVEAVATTLGPKGRNVIIEQSYGAPKITKDGVTVAKSIEFKDPFENMGAQLVRQVCNKTNDLAGDGTTTSAVLVASIFSEGIKSIATGTNPIDMKRGMDRAVEVILKNIESQSRTVTNTENVVQVATISANGDVELGKLIGEAMEKVGKDGVITTQDGKTLTTELEVVEGMSVDRGYISPYFVTDAKTQKAELEDAFVLVSAKKLNNIHT-ILPVLNHVVRSGRPLLIIADDVESEALTTMIFNKLQGKLKIACVKAPGFGDNKAAMLQDIAIFSGACVVGEESGVELDAASILGSVKKATITKDDTVLLNGGGMKERVDLVRGLIERETSDYNREKLQERLAKLSGGVAVIRVGGASEVEVNEKKDRITDALCSTRAAVQEGIVPGGGPALLRASKALDGLLQQRTGVQIIRNAVRLPAHRIVANAGREGAVVVEKVLENTVGYDAQLDRYVNMFEAGIIDPARVVRVALTDAASVASLMMTAEAAVVDLPK
;
END;

[ The following blocks are output data for analysis step 1769 ]
BEGIN TREES;
      TITLE Tb6545;
      LINK TAXA = TaxaForAnalysisStep1769;
      TREE cpn60 = [&R] (Cucurbita_sp.,Arabidopsis_thaliana,(Dictyostelium_discoideum,(Plasmodium_falciparum,(((Drosophila_melanogaster,Homo_sapiens),(Schizosaccharomyces_pombe,Saccharomyces_cerevisiae)),((((Bradyrhizobium_japonicum,(Bartonella_bacilliformis,Rhizobium_meliloti)),(Caulobacter_crescentus,Rhodobacter_sphaeroides)),((Chlamydia_trachomatis,(Treponema_pallidum,Thermus_thermophilus)),(Neisseria_gonorrhoea,(Chromatium_vinosum,(Eschericia_coli,_Pseudomonas_aeruginosa))))),(Trypanosoma_brucei,Euglena_gracilis))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4184]


END;