#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 7:35 GMT TreeBASE (cc) 1994-2008 Study reference: Roalson E., Skog L., & Zimmer E. 2003. Phylogenetic relationships and the diversification of floral form in Achimenes (Gesneriaceae). Systematic Botany, 28(3). TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1024] [ The following blocks are input data for analysis step 1787 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1787; DIMENSIONS NTAX=32; TAXLABELS Achimenes_admirabilis Achimenes_antirrhina Achimenes_candida1 Achimenes_candida2 Achimenes_cettoana Achimenes_dulcis1 Achimenes_dulcis2 Achimenes_erecta1 Achimenes_erecta2 Achimenes_fimbriata Achimenes_flava Achimenes_glabrata Achimenes_grandiflora1 Achimenes_grandiflora2 Achimenes_heterophylla Achimenes_hintonii Achimenes_longiflora1 Achimenes_longiflora2 Achimenes_mexicana1 Achimenes_mexicana2 Achimenes_misera1 Achimenes_misera2 Achimenes_nayaritensis Achimenes_occidentalis Achimenes_patens1 Achimenes_patens2 Achimenes_pedunculata1 Achimenes_pedunculata2 Achimenes_pedunculata3 Achimenes_woodii Moussonia_deppeana Moussonia_septentrionalis ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M615] TITLE Achimenes.ITS; LINK TAXA = TaxaForAnalysisStep1787; DIMENSIONS NCHAR=648; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=N GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Achimenes_admirabilis TCGATACCTGCAAAGTAAACCAGCGAACACGTTTTAAACATATGCTTGGGTTCGTGCCGTTGGATGCCTCGGTGTGTCCCTCGTCTCGCTCCCATCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGACTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTATCATGAGAATGCTTGCTCTCCC-GCAAGGCATCGTTCGCGGTGTATCGCGCGGGGTTGCA-CGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCC--ATCCCCTTTCCTAT------CGGGAAGGGAGTTGGG-CAAAGGGGGCGGACATTGGCCTCCCGTGCTGTATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGTGAGACCTCGTCGAATTCTGGACATCATA-TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_antirrhina TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTTGCGGTGTGT--TGCGAGGTGGCA-CGTGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-AGACA-TTCCCTCT------ACGGGAGTGAGTTAGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGCACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT----ATCATTGCTTTCGACC Achimenes_candida1 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGATCGTGCCGTTGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTGT--TGCGGGGTGGCAACGTGCCTCATGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT-----ACAGGAAGTGAGTTGGT-CTGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTTGAATTTCGGACATCAGAGTATT-GACCCATCAT---------TGTCTTCGACC Achimenes_candida2 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGATCGTGCCGTTGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTGT--TGCGGGGTGGCAACGTGCCTCATGTATCACTAAA{CT}GACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT-----ACAGGAAGTGAGTTGGT-CTGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGT{CT}GAATTTCGGACATCAGAGTATT-GACCCATCAT---------TGTCTTCGACC Achimenes_cettoana TCGATACCTGCAAAGTAAACCAGCGAACACGTTTCAAACACGC--TTGGGTTCGTGCCGTCGGATGCCTTGGTGCGTCCCTCGTCTCGCTCCCATCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTCTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTATCATGAGAATGCTTGCTCTCCC-GCAAGGCATCGTTCGCGGTGTATCGCGCGGGGTGGCA-TGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCCC-TCTCCTAT------CGGGAAGGGAGCTGGG-CAAAGGGGGCGGACATTGGCCTCCCGTGCTGTATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCATGT--CGCGACTAGTGGTGGTTGAAAAAATCGCGTGCTGTCGTGTGAGACCTCGTCGAATTCCGGACATCGTA-TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_dulcis1 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGCTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGATTGCTTG--CTCCC-GCAAGGCATCGTCCGCGGTGTAT--TACGGGTTGGCA-CGCGCCTCTTGAATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_dulcis2 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGCTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGATTGCTTG--CTCCC-GCAAGGCATCGTCCGCGGTGTAT--TACGGGTTGGCA-CGCGCCTCTTGAATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_erecta1 TCGATACCTGCAAAGTAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCGGTGTGTCCCTCGTCTCGCTCCCATCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTCTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTGTCATGAGAATGCTTGCTCTCCC-GCAGGGCATCGTTCGCGGTGTATCGCGCGGGGTGGCA-TGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCCC-TTTCCAAT------CGGGAAGTGAGTTGGG-CCAAGGGGGCGGACATTGGCCTCCCGTGCTGTATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGTGAGACCTCGTCGAATTCTGGACATCAT--TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_erecta2 TCGATACCTGCAAAGTAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCGGTGTGTCCCTCGTCTCGCTCCCATCCCGACTGCGCA{CT}GCGTGCGTGCGTTGCTCGGTCTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTGTCATGAGAATGCTTGCTCTCCC-GCAAGGCATCGTTCGCGGTGTATCGCGCGGGGTGGCA-TGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCCC-TTTCCAAT------CGGGAAGTGAGTTGGG-CCAAGGGGGCGGACATTGGCCTCCCGTGCTGTATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGTGAGACCTCGTCGAATTCTGGACATCAT--TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_fimbriata TCGATACCTGCAAAGCAGACCCGCGAACACGTTTCAAACATGC--TTGGGTGCGTGCCGTCGGGCGCCTCGGTGCGTCCCTCGTCCCTCACCCTTCCCGAGCACGCATGCGTGCGTGTGTTGCTCGGTTTAACGAACATCCCGGCGCGGCATGCGCCAAGGAAAACTATCATGAGAATGCTTG--CTCCC-GCAGGGCATCGTTCGCGGTGTGT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACCTAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCC--ACCCA---CCCATTCCATCCGTGGAAGTGAGTCGGG-CCACGGGAGCGGACATT{AG}GCCTCCCGTGCTATATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTACGT--CACGACCAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCTCGTCGGATTTCGGACATCAAAGTATT-GACCCACCAG------CATCGCTTTCGACC Achimenes_flava TCGATACCTGCAAAGTAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGATCGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTAT--TGCCGGGCGGCA-CGCGCCTCCTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_glabrata TCGATACCTGCAAAGCAAACCCGTGAACACGTTTCAAACATGC--TTGGGTTCGTGTCTTTGGATGCCTTG--GTGTCCATAGACGCGCTCCCTCCCCGACCACGCATGCATGCGTGTGTTGGTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTAAATTGAGAATGCTTG--GTCCC-GCAAG-CATCGTTCGCGGTGTAT--TGTGGGATTTCA-TCAGCCTCTTTTATCAATAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCTCGCATCGCGTCGCTCCCCCCC-ACCCA-TTTCCTCT------ATGGAAGTGAGTTGGGCCCAAGGGGGCGGATAATGGCCTCCCGTGCTTTATTTTGTGCGGCTGGCCCAAATTTGATTCCTGGTCGACGTATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGTACGACCTCGTTAGATTTTGGACATCAT--TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_grandiflora1 TCGATACCTGCAAAGCAAACCCGTGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTTG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCATGCGTGCGTTGCTCGGCTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTGT--TGCGGGGTGTCA-CGCGCCTCATGTATCATTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCTCGTCGTTCCCCCCC-ACGCA-TTCCCTCT-----ACGGGGATTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGTACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATC-GACCCACCAG-CATATCATTGCTTTCGACC Achimenes_grandiflora2 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCGTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGCTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTGT--TGCGGGGTGTCA-CGCGCCTCATGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT-----ACGGGGATTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGTACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCACCAG-CATATCATTGCTTTCGACC Achimenes_heterophylla TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTCGGACGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCATTTCCCTCT------ATGGAAGTGAGGTGGG-ACAGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGGATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_hintonii TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCTCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGATCGCTTG--CTCCC-GCAAGGCATCGTCCGCGGTGTAT--TGCGGGGTGGCA-CGCTCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCCCACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_longiflora1 TCGATACCTGCAAAGTAAACCAGCGAACACGTTTCAAACACGC--TTGGGTTCGTGCCGTTGGATGCCTTGGTGTGTCCCTCGTCTCGCTCCCATCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTCTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTATCATGAGAATGCTTGCACTCCC-GCAAGGCATCGTTCGCGGTGCATCGCGCGGGGTTGCA-TGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-GCCCC-TTTCCTAT------CGGGAAGGGAGTTGGG-CAAAGGGGGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCACGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGCGAGACCTCGTCGAATTCCGGACATCAT--TATT-GACCCAGCGT---------TGCTTTCGACC Achimenes_longiflora2 TCGATACCTGCAAAGTAAACCAGCGAACACGTTTCAAACACGC--TTGGGTTCGTGCCGTTGGATGCCTTGGTGTGTCCCTCGTCTCGCTCCCATCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTCTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAATACTATCATGAGAATGCTTGCACTCCC-GCAAGGCATCGTTCGCGGTGTATCGCGCGGGGTTGCA-TGCGCCTCTTGTATCACCAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-GCCCC-TTTCCTAT------CGGGAAGGGAGTTGGG-CAAAGGGGGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGCACGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTCGTGCGAGACCTCGTCGAATTCCGGACATCAT--TATT-GACCCAGCGT---------TGCTTTCGACC Achimenes_mexicana1 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGCTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACG-----------------------------------GTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCATTCTTTTGAATGCTTTCGACC Achimenes_mexicana2 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGCTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACNNNNNNNNNNNNNNNNNN-NNNNNNNATCGTTCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCATTCTTTTGAATGCTTTCGACC Achimenes_misera1 TCGATACCTGCAAAGCAAACCCGTGAACACGTTTTAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCG--GTGTCCCTCGTCACGCTCCCTTCCCGACTACGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCATGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTTT--TGTGGGGTGGCA-TGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACGTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCC--TTTCCTCT------ATGGAGTTGAGTTGGG-CCAAGGGGGCGGACATTGGCCTCCCGTGCAATATTTTGTGCGGTTGGCCCAAATTTGATTCCGGGTCGACGTATGT--CACGACTAGTGGTGGTTGTAATAATCGCGTGCTGTCGTGTGAGACCTCGTCGGATCCTGGACATCAA--TATT-GACCTAGCAT---------TGCTTTCGACC Achimenes_misera2 TCGATACCTGCAAAGCAAACCCGTGAACACGTTTTAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCG--GTGTCCCTCGTCACGCTCCCTTCCCGACTACGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCATGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGTTT--TGTGGGGTGGCA-TGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCC--TTTCCTCT------ATGGAGTTGAGTTGGG-CCAAGGGGGCGGACATTGGCCTCCCGTGCAATATTTTGTGCGGTTGGCCCAAATTTGATTCCGGGTCGACGTATGT--CACGACTAGTGGTGGTTGTAATAATCGCGTGCTGTCGTGTGAGACCTCGTCGGATCCTGGACATCAA--TATT-GACCCAGCAT---------TGCTTTCGACC Achimenes_nayaritensis TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TAGGGTTCGTTCTGTCGGATGCCTCG--GCGTCCCTCATCGCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACCATCACGAGAATGCTTG--CTCCC-GCAGGTCATCGTTCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAATGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCTGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCC--ACGCA-TTCCCTCT------ATGGAAGTGAGTTGGG-CTAGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCTAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTG{AC}GACACCCCGTCGGATTGCGGACATCAGAGTATT-GACCCAGCTT---------TGCTTTCGACC Achimenes_occidentalis TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAA{CT}ATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCGCTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGATCGCTTG--CTCCC-GCAAGACATCGTCCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCCTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCTCCCACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-TTAGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCC{CG}AAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT-----TCATTGCTTTCGACC Achimenes_patens1 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGCTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGAATGCTTG--CTCCC-GCAAGGCACCGTCCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCC--ACGCA-TTCCCTAT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATTTGACCCAGCAT-----TCATTGCTTTCGACC Achimenes_patens2 TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGCTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGAATGCTTG--CTCCC-GCAAGGCACCGTCCGCGGTGTAT--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCC--ACGCA-TTCCCTAT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGC{AG}TGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATTTGACCCAGCAT-----TCATTGCTTTCGACC Achimenes_pedunculata1 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCCCGCAAGGCATCGTTTGCGGTGTGT--TGCGAGGTGGCA-CGTGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTGGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-AGACA-TTCCCTCT------ACGGGAGTGAGTTAGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGCACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT----ATCATTGCTTTCGACC Achimenes_pedunculata2 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTTGCGGTGTGT--TGCGAGGTGGCA-CGTGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-AGACA-TTCCCTCT------ACGGGAGTGAGTTAGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGCACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT----ATCATTGCTTTCGACC Achimenes_pedunculata3 TCGATACCTGCAAAGCAAACCCGCGAACACGTCTCAAACATGC--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACTATCACGAGAATGCTTG--CTCCCCGCAAGGCATCGTTTGCGGTGTGT--TGCGAGGTGGCA-CGTGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCTGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-AGACA-TTCCCTCT------ACGGGAGTGAGTTAGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTCGATTCCGAGTCGACGCACGT--CGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATT-GACCCAGCAT----ATCATTGCTTTCGACC Achimenes_woodii TCGATACCTGCAAAGCAAACCCGCGAACACGTTTCAAACACGA--TTGGGTTCGTGCCGTCGGATGCCTCG--GCGTCCCTCGTCCCGTTCCCTTCCCGACTGCGCATGCGTGCGTGCGTTGCTCGGTTTAACGAACATCCCGGCGCGGCAAGCGCCAAGGAAAACAATCACGAGAATGCTTG--CTCCC-GCAAGGCATCGTTCGCGGTGT{AG}T--TGCGGGGTGGCA-CGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTCTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGTTCCCCCCC-ACGCA-TTCCCTCT------ACGGAAGTGAGTTGGG-CCGGGGGAGCGGACATTGGCCTCCCGTGCTGCATTTTGTGCGGTTGGCCCAAATTTGATTCCGAGTCGACGTATGTGTCGCGACTAGTGGTGGTTGGAACAATCGCGTGCTGTCGTGCGAGACCCCGTCGGATTTCGGACATCAGAGTATTTGACCCAGCAT-----TCATTGCCTTCGACC Moussonia_deppeana TCGATACCTGCAAAGCAAACCCGTGAACACGTTCCAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCG--GCGTCCCTCGTCTCGCTCCCTTCCCGACTGTGCATGCGTGCATGCGTTGCTCGGTTTAACGAACAATCCGGCGCGGCAAGCGCCAAGGAAAACTATCATGAGAATGCTTG--CTCCC-GCGAGGCATCGTTCGCGGTGTAT--TGCGGGGTGGCT-TGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCAC-TTTCCATT------GTGGAAGTGGGTGGGG-CCAAGGGAGTGGACATTGGCCTCCCGTGCTA-TTCTTGTGCGGCTGGCCCAAATTTGATTCCGGGTCGACGTATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTTGTGCGAGACTTCGTCTGATTCTGGACATCAT--TATT-GACCCAGCAT---------TGCTTTCGACC Moussonia_septentrionalis TCGATACCTGCAAAGCAAACCCGTGAACACGTTCCAAACATGC--TTGGGTTCGTGCCGTTGGATGCCTCG--GCGTCCCTCGTCTCGCTCCCTTCCCGACTGTGCATGCGTGCATGCGTTGCTCGGTTTAACGAACAATCCGGCGCGGCAAGCGCCAAGGAAAACTATCATGAGAATGCTTG--CTCCC-GCGAGGCATCGTTCGCGGTGTAT--TGCGGGGTGGCT-TGCGCCTCTTGTATCACTAAACGACTCTCGGCAACGGATATCTCGGCTCTCGCATCGATGAAGAACGTAGCGAAATGCGATACTTGGTGTGAATTGCAGAATCCCGTGAACCATCGAGTTTTTGAACGCAAGTTGCGCCCGAAGCCATTAGGCCGAGGGCACGTCTGCCTGGGCGTCACGCATCGCGTCGCTCCCTCCC-ACCAA-TTTCCACT------GTGGAAGTGGGTGGGG-CCAAGGGAGTGGACATTGGCCTCCCGTGCTA-TTCTTGTGCGGCTGGCCTAAATTTGATTCCGGGTCGACGTATGT--CACGACTAGTGGTGGTTGAAACAATCGCGTGCTGTTGTGTGAGACTTCGTCTGATTCTGGACATCAT--TATT-GACCCAGCAT---------TGCTTTCGACC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Achimenes.ITS) = N: 1-648; CODONPOSSET CodonPositions (CHARACTERS = Achimenes.ITS) = N: 1-648; END; [ The following blocks are output data for analysis step 1787 ] BEGIN TREES; TITLE Tb6562; LINK TAXA = TaxaForAnalysisStep1787; TREE Fig._1a = [&R] ((Moussonia_septentrionalis,Moussonia_deppeana),((Achimenes_misera1,Achimenes_misera2),((((((Achimenes_flava,Achimenes_hintonii),Achimenes_occidentalis),(Achimenes_mexicana1,Achimenes_mexicana2),(Achimenes_dulcis1,Achimenes_dulcis2)),((Achimenes_grandiflora1,Achimenes_grandiflora2),((Achimenes_pedunculata1,Achimenes_pedunculata3),Achimenes_pedunculata2,Achimenes_antirrhina),(Achimenes_candida1,Achimenes_candida2)),(Achimenes_patens1,Achimenes_patens2)),Achimenes_woodii,Achimenes_nayaritensis,Achimenes_heterophylla),Achimenes_fimbriata),((((Achimenes_longiflora1,Achimenes_longiflora2),Achimenes_cettoana),Achimenes_admirabilis),Achimenes_erecta1,Achimenes_erecta2),Achimenes_glabrata)); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1228] END;