#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 19, 2025; 8:19 GMT

TreeBASE (cc) 1994-2008

Study reference:
Bailey C., Hughes C., & Harris S. 2004. Using RAPDS to develop DNA sequence loci
for species level phylogeny reconstruction: an example from Leucaena (Fabaceae).
Systematic Botany, 29(1): 4-14.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1034]

[ The following blocks are input data for analysis step 1804 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1804;
        DIMENSIONS NTAX=15;
        TAXLABELS
            Desmanthus_fruticosus
            Leucaena_collinsii_ssp._collinsi
            Leucaena_collinsii_ssp._zacapana
            Leucaena_cuspidata
            Leucaena_esculenta
            Leucaena_greggii
            Leucaena_lanceolata_var._lanceol
            Leucaena_lempirana
            Leucaena_macrophylla_ssp._macrop
            Leucaena_matudae
            Leucaena_multicapitula
            Leucaena_pueblana
            Leucaena_pulverulenta_2_4_6
            Leucaena_retusa
            Leucaena_salvadorensis
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M631]

	TITLE cpDNA;
	LINK TAXA = TaxaForAnalysisStep1804;
	DIMENSIONS NCHAR=134;
	FORMAT DATATYPE=Standard SYMBOLS= "0 1" MISSING=? GAP= -;

MATRIX
[                                            10        20        30        40        50        60        70        80        90        100       110       120       130    ]
[                                             .         .         .         .         .         .         .         .         .         .         .         .         .    ]
Desmanthus_fruticosus                001???10000000000000???????0000100100001000000010?????????????????000110011??000000??0000001???00000010000000011???????????110????????
Leucaena_collinsii_ssp._collinsi     00100000000000000000???????000000000000000000000000000000000000100000000000010000000000000000000100000000000000001000001010000????0000
Leucaena_collinsii_ssp._zacapana     00100000000000000000???????000000000000000000000000000000000000100000000000010000000000000000000000000000000000001000001010000????0000
Leucaena_cuspidata                   001???10000001000000???????000100000000100000000000001000000000000000110000000000000000000000000000000000000?00001000000010000????0001
Leucaena_esculenta                   000???10000000010000???????000100000000000000000000001000?????0000000110010100010100000000000100000000000100?00001000001011000????0001
Leucaena_greggii                     0110001100000100000001000100010010?0000101000101000100000????0??00000110000??010000000000100000000001000000011000100000101000100001101
Leucaena_lanceolata_var._lanceol     001???00000000000000???????000000010000000000010000010000000000001000000000010000000000000000000000000000000?00001000001010000????0000
Leucaena_lempirana                   101???00000000000000???????000000000000000000000000000000000000010000000000010000000000000000000000000000000?00001000001010000????0000
Leucaena_macrophylla_ssp._macrop     ??1???????????000000???????000000001100010010000000000000000000000000000000??000000001000000000000000000000000000010000101000000010000
Leucaena_matudae                     00100000000000010000???????001000000000000000000000001000???????00000110001000010010000000000100000000010010000000000001011000????0001
Leucaena_multicapitula               001000000000100000000001001000000010000000100000000000000????00000000000000??000000000000000000100000000000000000000001101000000010010
Leucaena_pueblana                    001???10000000001000???????000100000000000000000000001000000010000000110011001010100000000000100000000000100000001000001011000????0001
Leucaena_pulverulenta_2_4_6          00000010000001100000???????001010100000100000000000001010100000000000101011001010101100000101001000000100000000000001100000001????0001
Leucaena_retusa                      001010111100000000001010100001001000010101000001000100100100001000000110000??010000000100000000001000000000001000000000101000100000001
Leucaena_salvadorensis               001???00001000000000???????000000000000001000000100000000000000001010000000010000000000000000000000000000000?00011000001010000????0000
;
END;

[ The following blocks are output data for analysis step 1804 ]
BEGIN TREES;
      TITLE Tb6579;
      LINK TAXA = TaxaForAnalysisStep1804;
      TREE cpDNA_tree = [&R] (Desmanthus_fruticosus,(((Leucaena_lempirana,(Leucaena_salvadorensis,Leucaena_lanceolata_var._lanceol),(Leucaena_macrophylla_ssp._macrop,Leucaena_multicapitula),(Leucaena_collinsii_ssp._collinsi,Leucaena_collinsii_ssp._zacapana)),(Leucaena_matudae,(Leucaena_esculenta,Leucaena_pueblana))),(Leucaena_cuspidata,(Leucaena_pulverulenta_2_4_6,(Leucaena_greggii,Leucaena_retusa)))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1247]


END;