#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on June 22, 2026; 11:50 GMT TreeBASE (cc) 1994-2008 Study reference: Maxfield-taylor S., Mujic A.B., & Rao S. 2015. First Detection of the Larval Chalkbrood Disease Pathogen Ascosphaera apis (Ascomycota: Eurotiomycetes: Ascosphaerales) in Adult Bumble Bees. PLoS ONE, 10(4): e0124868. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S16737] [ The following blocks are input data for analysis step 18150 ] BEGIN TAXA; TITLE TaxaForAnalysisStep18150; DIMENSIONS NTAX=26; TAXLABELS Ascosphaera_acerosa_U68321 Ascosphaera_aggregata_U68323 'Ascosphaera apis ATCC_MYA4450_FJ172292' 'Ascosphaera apis ATCC_MYA4451_FJ172293' Ascosphaera_apis_U68313 'Ascosphaera apis USDAARSEF_7405' Ascosphaera_asterophora_U68322 Ascosphaera_atra_U68314 Ascosphaera_celerrima_U68325 Ascosphaera_colubrina_U68320 Ascosphaera_duoformis_U68316 Ascosphaera_flava_U68332 Ascosphaera_fusiformis_U68324 Ascosphaera_larvis_U68330 Ascosphaera_major_U68315 Ascosphaera_naganensis_U68327 Ascosphaera_osmophila_U68317 Ascosphaera_pollenicola_U68329 Ascosphaera_proliperda_U68318 Ascosphaera_solina_U68328 Ascosphaera_subcuticulata_U68331 Ascosphaera_variegata_U68319 Ascosphaera_xerophila_U68326 Aspergillus_terreus_NIH2624 Fungal_Culture_A1 Fungal_Culture_A2 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37122] TITLE Ascosphaera_ITS_Alignment; LINK TAXA = TaxaForAnalysisStep18150; DIMENSIONS NCHAR=729; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ascosphaera_acerosa_U68321 -------------------------------CTGTGTGTCTGTACGGTC---------TGGC-------TTATCGCCGG--GCGTGCACTCCCACCCTTGTCTA-CTTACC-TGTTGC-TTTGGCGGACCTGC--GGG-TGC----TTGCACTTGCTGCCGGGAAGACGGTCTCGTC-------------------------------------TCCGGGCTCG--TGTCCGCC-GAAGATC--ACT--GAACTCCGATCG--AAGATT---GAAGTCTGAAGAAC---AAAGAT-TA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-TGGCTTGTGTGATGGGTGATCGT--CC----------TGTCTTT--GGAAGGACGCACCTGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TCCGCTCTTGTGGCCTGGCCGACTTGTCCGGTC-TATACCAA------------------------CTTCTCGT--------GG------------------------------------------------ Ascosphaera_aggregata_U68323 -------------------------------ACGTGTGTCTGTGCGGTGCTTCCCGGGCTTT------CCCCGGGGGGC--TCGCGCACTCCCACCCTTGTCTACCTGACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTTT----ACACGCCCGCTGCCGGGAAAAGACCCTCGAC-------------------------GAGGGGGTCTCGTCCGGGCTCG--CGCCCGCC-GGAGGTA--AAC--GAACTCCAGTCG--AAGTATCTTGCAGTCTGAAGAAACA--AAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCAAGATCAATCATGTTCTTTTTTGTTTTTACAGT--------GG------------------------------------------------ 'Ascosphaera apis ATCC_MYA4450_FJ172292' TCCGTAGGTGAACCTGCGGAAGGATCAT-TAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAG--------- 'Ascosphaera apis ATCC_MYA4451_FJ172293' -------------------------------ATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GG------------------------------------------------ Ascosphaera_apis_U68313 -------------------------------ATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GG------------------------------------------------ 'Ascosphaera apis USDAARSEF_7405' -------------------A-GGATCAT-TAATGTGCCTCTTTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATCAAT Ascosphaera_asterophora_U68322 -------------------------------ACGTGTGTCTGTACGGTC---------TGGT-------CAATCGCCGG--CCGTGCACTCCCACCCTTGTCTATCTTACC-TGTTGC-TTTGGCGGACCTGC--GGG-TGC----TTGCACCTGCTGCCGGGATGGCGTTTGCGTC-------------------------------------TCCGGGCTCG--CGTCCGC--GAAGGTT--ATT--GAACTCCGATCG--AAGATT---GAAGTCTGAAGAAT---AAAGAT-TA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGATGGGTGATCGT--CC----------TGTCTTT--GGAAGGACGCACCTGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TCCGCTCTTGTGGCCTGGCCGACTTGTCCGGTC-GATACCAT--------------CTTTTT-------CTCGT--------GG------------------------------------------------ Ascosphaera_atra_U68314 -------------------------------CTGTGTGTTTGTGCGGC---------CTTC-----A----CCGG------CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGTTGGCCTGCGTGCCGCCGCTGCCGGGGGGC-CTTTTCGGTC------------------------------------CCCGGGCGCG-CTGCCCGCC-GAAGGAA--ACT--GAACTCCAGTCG--AAGATT---GAAGTCTGAGATAGATT---GAG--A--AATAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------TGTCCGTGAGGCGGGACGCACCCGAAAGGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGCATGGAACTTGAA---CCCGCTCGTGAGGCCTGGCCGACC-GTC-GGTC-CA-ACCATCTACTA------------------CTTCCAGT--------GG------------------------------------------------ Ascosphaera_celerrima_U68325 -------------------------------ATGTGTGTCTGTGCTGTC-CGGT-GCCCTT----AAAC--AAGGCCCG-GCAGCGCACTCCCACCCTTGTCTATCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTTT---GACGAGCCTGCTGCCGGAGGGGATCTTCTTCCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGATA--CAT--GAACTCCAGTCG--AAGAAT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-GA-AACGTCAACTA---------TTTTTTTT----CT-GT--------GG------------------------------------------------ Ascosphaera_colubrina_U68320 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAATTTT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_duoformis_U68316 -------------------------------CTGTGTGTTTGTGCGGC---------CTTC-----A----CCGG------CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGTTGGCCTGCGTGCCGCCGCTGCCGGGGGGC-CTTTTCGGTC------------------------------------CCCGGGCTCG-CTGCCCGCC-GAAGGAA--ACT--GAACTCCAGTCG--AAGATT---GAAGTCTGAGATAGATT---GAG--A--AATAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------TGTCCGTGAGGCGGGACGCACCCGAAAGGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGCATGGACCTTGAAGAACCCGCTCGTGAGGCCTGGCCGACC-GTC-GGTC-CA-ACCATCTACTA------------------CTTCCAGT--------GG------------------------------------------------ Ascosphaera_flava_U68332 -------------------------------ACGTGTGTCTGTGCGGTT-CGTTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTC-------AGGC-TGCTGCTGGAGGG----TCAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACG--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTG-ACGAACGT--CC----------CGTCTTA--GGAGGGACGCGTCCCAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCA--A---------TTGTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_fusiformis_U68324 -------------------------------ACGTGTGTCTGTGCGGTTTCGGGCCCCCCTCCCCAAACGGAGGGACCTGTGCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTCT------CGCACCCGCTGCCGGGACA---------CTG------------------------------------TCCGGGCTCG--CGTCCGCC-GAAGGTA--AAC--GAACTCCAGTCG--AAGTTT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGAGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCTCGAAAAGCAGTGAC-GGCGT-CGTGATCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCAGCTATCA---------------TCACATCTAGT--------GG------------------------------------------------ Ascosphaera_larvis_U68330 ------------------------------AGCGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGGGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACTATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_major_U68315 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_naganensis_U68327 -------------------------------CTGTGTGTTTGTGCGGCG-----TCGCCTT-----A----ACGGTTCG--CCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GACTT---------CGGTTGCTGCCGGGGGGC-CTCTGAGGCT------------------------------------CCCGGGCTCGTCTGCCCGCC-GAGGAAA--ACT--GAACTCCAGTCG--AAGTAT---GATGTCTGAGAAAAATTTTTGAT--A--AATTAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTC--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCA-CTCGCTGTAGTGGTCCGGCCGACA-GTCTGGTC-TA-ACCCGGCGGTAGTTCTCT-ACTGCCACACCTTCTAGT--------GG------------------------------------------------ Ascosphaera_osmophila_U68317 -------------------------------A-GTGTGTCTGTGCGGT--CT------TCGT-------TCCCGGTTGC--CGG---ACTCC-ACCGTT--CTACCTTACC-TGTTGCCTTCGGCGGACC-GT--GGGCTTC----CAAAGCCTGCTGCCGGGAACGAACCCCCTCTCTCCTCTCCCCTCCGGGAGTAGAGGGAGGGGGATCCGTCCGGGCTCG--CGTCCGCC-GGAGGTA--AAC--GAACTCCAGTTG--AAGCATTT-GCAGTCTGAAGAAT---AAAGATTTA--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCAACGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTAC--GGAGG-ACGCGCCCGAAAGGCAGTGAC-GGCGTACGTGTTCCGGTGCCCGATCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GACCGGTC-GA-ACCCA-GGTCT-TTCACGGCCTATTTTAC--TCCAGT--------GG------------------------------------------------ Ascosphaera_pollenicola_U68329 -------------------------------ACGTGTGTCTGTGCGGTT-CGGTTGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGCTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCTGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GTAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CTGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACTATTA---------TTTTTT------CT-GT--------GG------------------------------------------------ Ascosphaera_proliperda_U68318 -------------------------------ACGTGTGTCTGTGCGGTGCTTTCCCGGTACT-------CCCGGGTTGC--CCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGACCTGC--GGGCCTT----CGTGGCCTGCTGCCGGGAAGAGGAGCCTC---------------------------ACGGCTTCCCAGTCCGGGCTCG--CGTCCGGC-GGAGGTA--ATT--GAACTCCAGTCG--AAGCATTT-GCAGTCTGAAGAAT---AAAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGCGTGTTGGGCGGTCGT--CC----------CGTCTTC--GGAGGGACGCGTCCGAAAAGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCA-GATCAATCATCGTC------------TCAGT--------GG------------------------------------------------ Ascosphaera_solina_U68328 -------------------------------ATGTGTGTCTGTGCGGG--CGCTCGGATCTC-------CCCGGGGTGC--CGGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGG-CCTGC--AGGCCTA----CGT-GCCTGCTGCCGGGAAT--ACCCTC----------------------------GAGGGGG--TCGTCCGGGCTTG--CGTCCGCC-GGAGGTG--TAT--GAACTCCAGTCG--AAGTTTTTTGCAGTCTGAAGAAT---AAAGATTTA--A-TAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTC--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCA-GATCA----------------ATCTTC-AGT--------GG------------------------------------------------ Ascosphaera_subcuticulata_U68331 -------------------------------ACGTGTGTCTGTGCGGTGCTTCCCGGGCTTTA-----CCCCCCGGGGC--GCTTGCACTCCCACCCTTGTCTACCTGACC-TGTTGC-TTCGGCGGGTCTGC--GGGCTTC----ACGTGCCC-CTGCCGGGAAAAGACCCTTGAC-------------------------GAGAGG-TCTCGTCCGGGCTCG--CGTCCGCC-GGAGTTA--A-C--GAACTCCAGTCG--AAGTATCTTGCAGTCTGAAGAAACACAAAGATCTA--A-TGAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAATCCTCAAGCA-CGGCTTGCGTGTTGGGCGACCGT--CC----------CGTCTTT--GGAGGGACGCGCCCCAAAGGCACTGAC-GGCGT-CGCGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCCTGTGGCCCGGCCGACT-GTCCGGTC-GA-ACCCAAGATCAATCATGTTCTTTT------CAACAGT--------GG------------------------------------------------ Ascosphaera_variegata_U68319 -------------------------------ACGTGTGTCTGTGCGGT--CGGTCGCCCCT----AAAA--AAGGCCCGAGCCGCGCACTCCCACCCTTGTCTATCTCACC-TGTTGC-TTCGGCGGGCCTGC--GGGCTT-------ATGCCTGCTGCCGGAGGG----TTAACGCC------------------------------------CCCTGGCTCG--CGTCCGCC-GAAGACA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAATTTT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTTTGTTGGACGATCGT--CC----------CGTCTTA--GGAGGGACGCGTCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTCGTCT-TCCGCTCTTGTGGCCTGGCCGACT-GTCCGGTC-GA-ACCAACCATTA---------TTTTTTT-----CT-GT--------GG------------------------------------------------ Ascosphaera_xerophila_U68326 -------------------------------CCGTGTGTTTGTGCGGCG-----TGCCCCT-----AAA--CAAGGCCG--CCGCGCACTCCCACCCGTGTCTACCTTACC-GGTTGC-TTCGGCCGGTCGGG--CCCCTAC--AAAGGCCGCTGCCGGGGGGATGG-TTAATACCCT------------------------------------CCCTGGCTCG-CTGCCCGCC-GAAGGAA--ACA--GAACTCCAGTCG--AAGTAT---GATGTCTGAAGGAAAACG--AGT--A--ATAAACTCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGACCGT--CCGCTGCCTGGTCTTCTCCAGGCCTGCGGACGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGG--TTT-TCT-CTCGCTCCAGTGGCCCGGCCGGCA-GTCCGGTCCCA-ACCAA-T-TTA------------------CTTCTAGT--------GG------------------------------------------------ Aspergillus_terreus_NIH2624 --------------------------------------------------------------------------------GCCCAACCTCCCACCCGTGACTATTGTACCT-TGTTGC-TTCGGCGGGCCCGCCAGCGTT----------GCTGGCCGCCGG-GGGG--CGACTCGCC------------------------------------CCCGGGCCCG--TGCCCGCC-GGAGACCCCAACATGAACCCTGTTCTGAAAGCTT---GCAGTCTGAGTGTGATT---CTT--TGCAATCAGTTAAAACTTTCAACAATGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCC-CGGCTTGTGTGTTGGGCCCTCGTCCCC----------CGGCTCC--CGGGGGACGGGCCCGAAAGGCAGCGGCGGGCAC-CGCG-TCCGGTCCTCGAGCGTATGGGGCTTCGTCT-TCCGCTCCGTAGGCCCGGCCGGC---GCCCGCCGACGCATTTATTTGC------------------AACTTGTTTTTTTCCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTAAGCATATCAAT Fungal_Culture_A1 ------------CCTGCGGA-GGATCAT-TAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATCATA Fungal_Culture_A2 -------------------------CATGTAATGTGTGTCTGTGCGGCT-AGGT-GCCCCT----AAAC--AAGGCCCT-GCCGCGCACTCCCACCCTTGTCTACCTTACC-TGTTGC-TTCGGCGGGCCTGC--GGGTTCT---CGCGAGCCTGCTGCCGGAGGGG--TTAGTTCCC------------------------------------CCCTGGCTAG--CGTCCGCC-GAAGATA--AAC--GAACTCCAGTCG--AAGATT---GAAGTCTGAAGAAAATT---GAT--A--AATAAATCAAAACTTTCAACAACGGATCTCTTGGTTCCGACATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCCGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCAACCCTCAAGCA-CGGCTTGTGTGTTGGGCGATCGT--CC----------CGTCTTA--GGAGGGACGCGCCCGAAAGGCAGTGAC-GGCGT-CGTGTTCCGGTGCCCGAGCGTATGGGGCTTTGTCT-TTCGCTCTAGTGGCCTGGCCGACT-GTCCGGTC-TA-ACCATCATTTA------------------CTTCTAGT--------GGTTGACCTCGGATCAGGTAGGGTTACCCGCTGAACTTAAGCATATC--- ; END; [ The following blocks are output data for analysis step 18150 ] BEGIN TREES; TITLE Ascosphaera_Bayesian_Consensus; LINK TAXA = TaxaForAnalysisStep18150; TREE con_50_majrule = [&R] (Aspergillus_terreus_NIH2624:0.746022,(((Ascosphaera_atra_U68314:0.006627,Ascosphaera_duoformis_U68316:0.004173):0.155705,Ascosphaera_naganensis_U68327:0.093573):0.045609,Ascosphaera_xerophila_U68326:0.230944):0.091309,(((Ascosphaera_colubrina_U68320:0.002418,Ascosphaera_variegata_U68319:0.002435):0.007337,Ascosphaera_major_U68315:0.002542,Ascosphaera_larvis_U68330:0.008222,Ascosphaera_pollenicola_U68329:0.015705,Ascosphaera_flava_U68332:0.025984):0.03407,Ascosphaera_celerrima_U68325:0.037191):0.022791,(((Ascosphaera_acerosa_U68321:0.053555,Ascosphaera_asterophora_U68322:0.012896):0.123665,((Ascosphaera_osmophila_U68317:0.073841,Ascosphaera_solina_U68328:0.0393):0.015414,(Ascosphaera_proliperda_U68318:0.087763,(Ascosphaera_aggregata_U68323:0.004805,Ascosphaera_subcuticulata_U68331:0.052078):0.056429):0.036584):0.083886):0.029391,Ascosphaera_fusiformis_U68324:0.082265):0.038986,(Ascosphaera_apis_U68313:0.002382,'Ascosphaera apis ATCC_MYA4450_FJ172292':0.002054,'Ascosphaera apis ATCC_MYA4451_FJ172293':0.002393,Fungal_Culture_A1:0.003003,Fungal_Culture_A2:0.002101,'Ascosphaera apis USDAARSEF_7405':0.010573):0.025092); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97102] END; BEGIN TREES; TITLE Ascosphaera_Bayesian_Consensus; LINK TAXA = TaxaForAnalysisStep18150; TREE con_50_majrule = [&R] (Aspergillus_terreus_NIH2624:0.373011,((Ascosphaera_xerophila_U68326:0.230944,(Ascosphaera_naganensis_U68327:0.093573,(Ascosphaera_atra_U68314:0.006627,Ascosphaera_duoformis_U68316:0.004173)1.00:0.155705)0.74:0.045609)1.00:0.091309,(Ascosphaera_apis_U68313:0.002382,'Ascosphaera apis ATCC_MYA4450_FJ172292':0.002054,'Ascosphaera apis ATCC_MYA4451_FJ172293':0.002393,Fungal_Culture_A1:0.003003,Fungal_Culture_A2:0.002101,'Ascosphaera apis USDAARSEF_7405':0.010573)0.82:0.025092,(Ascosphaera_celerrima_U68325:0.037191,(Ascosphaera_major_U68315:0.002542,Ascosphaera_larvis_U68330:0.008222,Ascosphaera_pollenicola_U68329:0.015705,Ascosphaera_flava_U68332:0.025984,(Ascosphaera_colubrina_U68320:0.002418,Ascosphaera_variegata_U68319:0.002435)1.00:0.007337)1.00:0.03407)0.99:0.022791,(Ascosphaera_fusiformis_U68324:0.082265,((Ascosphaera_acerosa_U68321:0.053555,Ascosphaera_asterophora_U68322:0.012896)1.00:0.123665,((Ascosphaera_osmophila_U68317:0.073841,Ascosphaera_solina_U68328:0.0393)0.54:0.015414,(Ascosphaera_proliperda_U68318:0.087763,(Ascosphaera_aggregata_U68323:0.004805,Ascosphaera_subcuticulata_U68331:0.052078)1.00:0.056429)0.82:0.036584)0.93:0.083886)0.67:0.029391)0.86:0.038986):0.373011); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97101] END;