#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 11, 2025; 19:45 GMT TreeBASE (cc) 1994-2008 Study reference: Linguiti G., Antonacci R., Tasco G., Grande F., Casadio R., Massari S., Castelli V., Consiglio A., Lefranc M., & Ciccarese S. 2016. Genomic and expression analyses of Tursiops truncatus T cell receptor gamma (TRG) and alpha/delta (TRA/TRD) loci reveal a similar basic public γδ repertoire in dolphin and human. BMC Genomics, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S19396] [ The following blocks are input data for analysis step 18492 ] BEGIN TAXA; TITLE TaxaForAnalysisStep18492; DIMENSIONS NTAX=45; TAXLABELS Camelus_dromedarius_TRDV1S1_F Camelus_dromedarius_TRDV1S2_F Camelus_dromedarius_TRDV1S3_F Camelus_dromedarius_TRDV1S4_F Camelus_dromedarius_TRDV1S5_F Camelus_dromedarius_TRDV1S6_F Camelus_dromedarius_TRDV2S1_F Camelus_dromedarius_TRDV2S2_F Camelus_dromedarius_TRDV4_F Homo_sapiens_TRDV1_F Homo_sapiens_TRDV2_F Homo_sapiens_TRDV3_F Ovis_aries_TRDV1S1_F Ovis_aries_TRDV1S10_F Ovis_aries_TRDV1S11_F Ovis_aries_TRDV1S12_F Ovis_aries_TRDV1S13_F Ovis_aries_TRDV1S14_F Ovis_aries_TRDV1S2_F Ovis_aries_TRDV1S3_F Ovis_aries_TRDV1S4_P Ovis_aries_TRDV1S5_P Ovis_aries_TRDV1S6_F Ovis_aries_TRDV1S7_F Ovis_aries_TRDV1S8_P Ovis_aries_TRDV1S9_P Ovis_aries_TRDV2_F Ovis_aries_TRDV3_F Ovis_aries_TRDV4_F Ovis_aries_TRVD1S15_P Ovis_aries_TRVD1S16_F Ovis_aries_TRVD1S17_F Ovis_aries_TRVD1S18_F Ovis_aries_TRVD1S19_F Ovis_aries_TRVD1S20_F Ovis_aries_TRVD1S21_F Ovis_aries_TRVD1S22_F Ovis_aries_TRVD1S23_F Ovis_aries_TRVD1S24_F Ovis_aries_TRVD1S25_F Tursiops_truncatus_TRDV1_1_F Tursiops_truncatus_TRDV1_1D_F Tursiops_truncatus_TRDV1_1N_F Tursiops_truncatus_TRDV2_F Tursiops_truncatus_TRDV4_P ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M36819] TITLE Tursiops_truncatus_7B_al_TRDV; LINK TAXA = TaxaForAnalysisStep18492; DIMENSIONS NCHAR=417; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Camelus_dromedarius_TRDV1S1_F --------------GCCCAGACAGTTA--------------------CTCAAGACCAGCCAG---CCCTATCCTCTCACTTAGGGGAGTCA-GCCACCCTGAACTGTCAGTATGAAACAAGTTACA----------------------CCGAATACT-----------------------------ATATTTTTTGGTACAAG---------------------CAGCCT-CCCAGTGGAGAGATGACTTTCCTTATTCAACAGTATTCATCTAGCGGGAATGCA--AAGAGTGGCCGCTACTCTGT-AAAC--TTCAGGAAAGCAGAAAAATCCCTCAGC-------------CTCACCATCTCAAACTTACAGCTGAAGGATTCT------------------------------ Camelus_dromedarius_TRDV1S2_F --------------GCCCAGACAGTTA--------------------CTCAAGACCAGCCAG---CAGTATCCTCTCACGTAGGGCAGACA-GCCACCCTGAACTGTCAGTATGAAACAAGTTATA----------------------GCACATACT-----------------------------ATATTTTTTGGTACAAG---------------------CAGCCT-CCCAGTGGAGAGATGACTTTCCTTATTCGTCAAGAGTATAATCGCGGGAATGCA--AAGAGTGGCCGCTACTCTGT-AAAC--TTCAGGAAAGCAGAAAAATCCCTCAGC-------------CTCACCATCTCAAACTTACAGCTGGAGGATTCT------------------------------ Camelus_dromedarius_TRDV1S3_F --------------GCCCAGACAGTTA--------------------CACAAGACCAGCCAG---CCATATCCTCTCACGTAGGGGAGTCA-GCCACCCTGAACTGTCGGTATGAAACAAGTTATA----------------------GCACATACA-----------------------------ATATTGTTTGGTACAAG---------------------CAGCCT-CCCAGTGGAGAGATGACTTTCCTTATTCATCAGGGTTCATCTAGCGGGAATGCA--AAGAGTGGCCGCTACTCTAT-AAAC--TTCCGGAAAGCAGAAAAATCCCTCAGC-------------CTCACCATCTCAAACTTACAGCTGGAGGATTCTGCAAAGTACTTCTGTGCTTTCGATGGAAG- Camelus_dromedarius_TRDV1S4_F --------------GCCCAGACAGTTA--------------------CTCAAGACCAGCCAA---CAGTATCCTCTCACGTAGGGGAGACA-GCCACCCTGAACTGTCGGTATGAAACGAGTTGGA----------------------GCTACTACT-----------------------------ATATTGTTTGGTACAAG---------------------CAGCCT-CCGAGTGGAGAGATGACTTTCCTTATTCATCAGGATTCATCTAGCGGGAATGCA--AAGAGTGGCCGCTACTCTAT-AAAC--TTCAGGAAAGCAGAAAAATCCCTCAGC-------------CTCAGCATCTCAAACTTACAGCTGGAGGATTCT------------------------------ Camelus_dromedarius_TRDV1S5_F --------------GCCCAGACAGTTA--------------------CTCAAGACCAGCCAG---CAGTATCCTCTCACGTAGGGCAGACA-GCCACCCTGAACTGT-AGTATGAAACAAGTTATA----------------------GTACATACT-----------------------------ATATTGTTTGGTACAAG---------------------CAGCCT-CCGAGTGGAGAGATGACTTTCCTTATTCATCAGGATTCATCTAGCGGGAATGCA--AAGAGTGGCCGCTACTCTAT-AAAC--TTCAGGAAAGCAGAAAAATCCCTCAGC-------------CTCAGCATCTCAAACTTACAGCTGGAGGATTCT------------------------------ Camelus_dromedarius_TRDV1S6_F --------------GCCCAGACAGTTA--------------------CTCAAGACCAGCCAG---CCATATCCTCTCACGTGGGGGAGACA-GTCACCCTGAACTGTCGGTATGAAACAAGTGATA----------------------GCATATACT-----------------------------ATATTTTTTGGTACAAG---------------------CAGCCT-CCCAGTGGAGAGATGACTTTCCTTATTCATCAGGGTTCATCTAGCGGGAATGCA--AATAGAGGCCGCTACTCTGT-AAAC--TTCCGGAAAGCAGAAAAAGCCCTCAGC-------------CTCACCATCTCAAACTTACTGCTGAAAGATTCTGCAAAGTACTTCTGTGCTCTCAGAGAAGG- Camelus_dromedarius_TRDV2S1_F --------------GCTGCGAAAGTAA--------------------CCCAAACTCAGACCA---CAGAAACAGCACAAGAAGGACAAGCT-GTGACCATGCACTGCACGTATGAAACCTCAGCGC----------------------TGAGGTATA-----------------------------CTTTGTACTGGTACAAA---------------------CAGGGT-CCCAGCGGAGGGATGGCTTTCCTTATTTATCAGGATGACAATAAGGCAAACGCA--AAGCGGGATCGCTACTCTGT-GAAC--TTCCAAAAGGCAAAGCAATCCATCAGC-------------CTCACCATCTCATCTTCACAGCTGGCAGACTCAGGAAAGTACTTCTGTGCTCTC--------- Camelus_dromedarius_TRDV2S2_F --------------GCTGCGAAAGTAA--------------------CCCAAACTCAGACCA---CAGAAACAGCACAAGAAGGACAAGCT-GTGACCATGCACTGCACGTATGAAACCACAGCAC----------------------AGAGGTATA-----------------------------CTTTGTACTGGTACAAA---------------------CAGGGT-CCCAGTGGAAGGATGGCTTTTCTTATTTATCAGGATGACAATAAGGCAAGCGCA--AAGCGGGATCGCTACTCTGT-GAAC--TTCCAAAAGGCAAACCAATCCATCAGC-------------CTCACCATCTCATCTTCACAGCTGGCAGACTCAGGAAAGTACTTCTGTGCTCTC--------- Camelus_dromedarius_TRDV4_F --------------TCTGCCAAAGTGA--------------------CCCA-GACGTCCCGG---GACCAGACAGTGGCGAGTGGCAGTGAGGTGACATTGCCCTGCACTTTCGAAACCGAATACT-----------------------CAGATCCAG----------------------------ATTTATACTGGTACCGAATGAGGCCAGGTCTTTCTCTTGAGTTTGTCCTGTACAGGGATAACACT-------------GAATCCCTTAATGCGGATTTT--GCTCAGGGTAGATTTTCTGT-GCAG--CACAATGTGGCTCAGAAAACTTTCCAC-------------TTGGTGATGTCCTCAGTGAGGGCTGAAGACAGTGCCACTTACTACTGTGTTCTG--------- Homo_sapiens_TRDV1_F --------------GCCCAGAAGGTTA--------------------CTCAAGCCCAGTCAT---CAGTATCCATGCCAGTGAGGAAAGCA-GTCACCCTGAACTGCCTGTATGAAACAAGTTGGT----------------------GGTCATATT-----------------------------ATATTTTTTGGTACAAG---------------------CAACTT-CCCAGCAAAGAGATGATTTTCCTTATTCGCCAGGGTTCTGATGAACAGAATGCA--AAAAGTGGTCGCTATTCTGT-CAAC--TTCAAGAAAGCAGCGAAATCCGTCGCC-------------TTAACCATTTCAGCCTTACAGCTAGAAGATTCAGCAAAGTACTTTTGTGCTCTTGGGGAACT- Homo_sapiens_TRDV2_F -----------GCCATTGAGTTGGTGC--------------------CTGAACACCAAACAG------TGCCTGTGTCAATAGGGGTCCCT-GCCACCCTCAGGTGCTC-CATGAAAGGAGAAGCG------------------ATCGGTAACTACT-----------------------------ATATCAACTGGTACAGG---------------------AAGACC-CAAGGTAACACAATCACTTTCAT---------------ATACCGAGAAAAGGAC--ATCTATGGCCCTGGTTTCAA-AGACAATTTCCAAGGTGACATTGATATTGCAAAGAACCTGGCTGTACTTAAGATACTTGCACCATCAGAGAGAGATGAAGGGTCTTACTACTGTGC---CTGTGACACC Homo_sapiens_TRDV3_F --------------TGTGACAAAGTAA--------------------CCCAGAGTTCCCCGG---AC-CAGACGGTGGCGAGTGGCAGTGAGGTGGTACTGCTCTGCACTTACGACACTGTATATT-----------------------CAAATCCAG----------------------------ATTTATTCTGGTACCGGATAAGGCCAGATTATTCCTTTCAGTTTGTCTTTTATGGGGATAAC-----------AGCAGA--TCAGAAGGTGCAGATTTT--ACTCAAGGACGGTTTTCTGTGAAACACATTCTGA---CCCAGAAAGCCTTTCAC-------------TTGGTGATCTCTCCAGTAAGGACTGAAGACAGTGCCACTTACTACTGTGCCTTTAG------- Ovis_aries_TRDV1S1_F --------------------AAAGTTA--------------------CCCAAGACCAGCCAT---ACATAACCAGTCAAACAGGGCAATCT-GTCATTCTGAACTGTCGGTATGAAGTAAGTTGGA----------------GTGGGTACATGCACT-----------------------------ACCTTTTTTGGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTTCCTTATTCGTCAGGAATCTTCTGGCCCGAATGCA--AGGAATGGCCGCTACTCTGT-AAAC--TTTCAGAGAGCACAGAACACCATCAGC-------------CTCACCATTTCTGCCTTACAGTTGGAAGACTCCGCAAAGTACTTTTGTGCAGTCTGGGAACT- Ovis_aries_TRDV1S10_F --------------GCCCAGAGAGTTA--------------------CTCAAAACCAGCCAG---ACATTTCCACTCAAGTTGGGGAGATA-GTCACCCTCAGCTGTCGATATGAGACAGTTCAGA----------------------GCCATTATC-----------------------------ACATTTTTTGGTACAAA---------------------CAACTT-CCCAGTGGAGAGATGATTTACCTTATTGGTCATGATTCTTCTAGCCAGAATGCA--AGATATGGCCGTTACTCTGT-AAAT--TTTAAGATATCACGTAAATTCATCAGC-------------CTCACGATTTCAGACTTAGAGCTGGAAGACTCTGCAAAGTACTTCTGCACTCTCTGGGAACT- Ovis_aries_TRDV1S11_F --------------GCCCAGAAAGTTA--------------------CTCAAGACCAGCCAG---ACATATCCAGTCAAGTTGGGGAGTTA-GCCACCATGAACTGTCAGTATGAGACAAGTTGGA----------------------GCAGCTATA-----------------------------ACATTTTTTGGTATAAG---------------------CAACTT-CCCCGTGGAGAGCTGATTTACCTTATTGGTCAGAATTCTTATAGCCCGAATGCA--AGGGATGGCTGCTACTCTAT-AAAT--TTTCAGAGATCCCGTAAAGCCATCAAC-------------CTCATTATCTCAGCCTTAAAGCTGGAAGACTCTGCAAAGTACTTCTGTGCTCTCTGGGAACT- Ovis_aries_TRDV1S12_F --------------GCCCAGGAAGTTA--------------------CTCAAAACCGGCCAG---ATATATCCAGCCAAGTGGGGCAATCA-GTCACCCTGAATTGTCGGTATGAAACAAGCTGGA----------------------GCTATTACT-----------------------------ACCTTGTTTGGTACAAG---------------------CAACTT-CCCAGTGGACAGATAACTTACCTTATTCAACAGTATTCAGAAAACAGCAATGCA--AGGAACGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCAGATAAATCCATCAGC-------------CTCATCATTTCATCCTTACAGCTGGAAGACTCTGCAAAGTACTTCTGTGCTCTCCGTGACT-- Ovis_aries_TRDV1S13_F --------------------AAAGTTA--------------------CTCAAGACCAGCCAG---ACATAACCCGTCAAGTGGAGCAGTCA-GTCACTCTGAACTGTCTGTATGAAGTAAGTTGGT----------------ACATGGACGCCTACT-----------------------------CCATTTTTTGGTTCAAG---------------------CAGCTT-CCCAGGGGACAGATGATTTACCTCATTTGTCAGTATTCAGAAGATGGGAATGCA--AGGGACGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCAGATAAGTCCATCAGC-------------CTCACCATTTCAGCCTTACAGCTGGAAGATACTGCAAAGTACTTCTGTGCTCTCCGTGAACT- Ovis_aries_TRDV1S14_F --------------------AAAGTTA--------------------CTCAAGACCAACCAG---ACATAACCAGTCAAGTGGGGCAGTCA-GTGACTCTGAACTGTAAGTATGAAGTCAGTTGGT----------------ACAAGATCTCCTACT-----------------------------CCATTTTTTGGTACAAG---------------------CAGCTT-CCCAGTGGACAGATGACTTACCTCATTCGTCAGTATTCAGAAAATGCGAATGCA--AGGGACGGCCGCTACTCTGT-AAAT--TTCCAGAAAGCAGATAAGTCTATCAGC-------------CTTACCATTCCAGCCTTACAGCTAAAAGATACTGCAAAGTACTTCTGTGCTGTCA-------- Ovis_aries_TRDV1S2_F --------------------AATGTTA--------------------CTCAAAACCAGACAG---TCATAATCAGTCAAGTGGGGAAGATA-GTCACCCTTAACTGTCAGTATGAAATTAGCAGGA----------------ATGTACATGACTACT-----------------------------GGATTTTTTGGTACCAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTACCTCATTCATCAGTATTCAGAAGACAGGAATGAA--AGGGATGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCACGTAAATCCATCAGC-------------CTCACTATTTCATTCTTAAAACTGGAACATTCTGCAAAGTATTTCTGTGCTCTCTGGGTACA- Ovis_aries_TRDV1S3_F --------------GCCCAGAAAGTTA--------------------CTCAAAACCAGCCAG---ATATATCCAGCCAAGTGGGGCAATCA-GTCACCCTGAATTGTCGGTATGAAACAAGCTGGA----------------------GCTATTACT-----------------------------ACCTTGTTTGGTACAAG---------------------CAACTT-CCCAGTGGACAGATAACTTACCTTATTCAACAGTATTCAGAAAACAGCAATGCA--AGGAACGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCAGATAAATCCATCAGC-------------CTCATCATTTCATCCTTACAGCTGGAAGACTCTGCAAAGTACTTCTGTGCTCTCCGTGACT-- Ovis_aries_TRDV1S4_P --------------------CAAGTAA--------------------CTCAAGTCCAGACAG---CTGTACCCAGTCAAGTGGGGCAGACA-GTCACCCTGAATTGTTGATATGAAGTAAGTTGGA----------------CCACGGGCTTCTACT-----------------------------ACATTTTTTGGTATAAA---------------------CAGCTT-CCCAGGGGAGAGATGACTTTGCTTATTCGTCAGTATTCAGAACACGGTAATACA--AGGAATGGCCGCTACTCTGT-AAAC--TTCCTGAAAGCACATAAATCCATCAGC-------------CTCATCATTTCAGCCTTACAGCGCGAAGACTCTGCAAAGTACTTCTGTGCTCTCTGGGAGCT- Ovis_aries_TRDV1S5_P --------------GCGCAGAGAGTTA--------------------TTCAAGACCAGCCAG---ACATATCCGGTCAACTGGGACAGTTA-GTCACCCTGAACTGTCGGTATGCAACAACCTGGA----------------------GCTATTACT-----------------------------ACGTGTTTTGGTACAAG---------------------CTGCTT-CCCAGCGGAGAGATGATTTACCTTATTCATCAGGTTTCTTCTGGCCAGAATGCA--AAGAATGGCCGCTACTCTGT-AAAT--ATTCAGAAAGCTCAAAAATCCATCAGC-------------CTCACCATTTCAGATTTACAGCTGGAGGATTCTGCAGAGTATTTCTGTGCTTACACAAAAA-- Ovis_aries_TRDV1S6_F --------------------AAAGTTA--------------------CTCAATATCAGCCAG---ACATAACCAGTCAAGTGCGGAACGTA-GTCATCCTGAACTGTCGGTATGAAACAAGTTGGA----------------ACGTGTACACCTACT-----------------------------GGATATTTTGGTACAAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTACCTCATTCCTCAGTATTCAGAAGATGGGAATGAA--AGGGACGGCCACTACTCTGT-AAAC--TTTCAGAACGCACATAAGTTCATCAGC-------------CTCACCATTTCATCCTTAAAGCTGGAGCATTCTGGAAAATACTTCTGTGCTCTCTGGGAACG- Ovis_aries_TRDV1S7_F ----------------------------------------------------------------------------------------TCA-GTCACCCTGAATTGTCAGTATGAAACAAGCTGGACTGCTTACTACATTTTTTGGTACAAGCAACTTCCCAGTGGACAGATGACTTACCTTATTCACATTTTTTGGTACAAG---------------------CAGCTT-CCCAGTGGACAGATGACTTATCTTATTCGTCAGTATTCAGATGATGGGAATGCA--AGGGATGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCTCATAAGTCCATCAGC-------------CTCACCATTTCAGCCTTAGAGCTGGAAGATTCTGCAAAGTACTTCTGCATTCTCAGAGTAT-- Ovis_aries_TRDV1S8_P --------------CCCCAGAAAGTTA--------------------TTCAAGACCAACCAG---ACATATTCACTCAGATTGGAGAGGCA-GTCACTGTGAACTGTTGGTCTGAAACAAGTTGGA----------------------GCAGTTATA-----------------------------ATATTCTTTGGTATAAG---------------------CAACCT-CCCAGTGGAGAGATGAATTTCCTTA---------------------------CA--AGGGATGGCCACTACTCTAT-AAAT--TTTCAGAGATCATTTAAATCCTCCAGC-------------CTCACCATTTCAACCTTACAACTGGAAGATTCTGCAAAGTACTCCTGTGCTCTCTTTGAACT- Ovis_aries_TRDV1S9_P --------------GCCCAGAGAGTTA--------------------CTCAAGGCCAGCCAG---ACATTTCCACTCAAGTTAGGGAGATA-GTCACCCTGAGCTGTCGATATGAGACAGATCACA----------------------GCCATTACA-----------------------------AAATTTTTTGGTATAAA---------------------CAACTT-CCCAGTGGAGAGATGATTTACCTTATTGGTCAAGATTCTTCTAGCCAAAATGCA--AGGTATGGCCGCTACTCCGT-AAAT--TTTAAGATATCACGTAAATTCATCAGC-------------CTCACGATTTCAGACTTAGAGCTGGAAGACTCTGCAAAGTACTTC------------------ Ovis_aries_TRDV2_F --------------GCTGACAAAGTGA--------------------CCCAAGCTCAGACTA---CCGTAACAGGGCAGGAAAGAGAAGCT-GTGACCATAGGCTGCACGTATGAAACCTCTCAGA----------------------CTTATTATA-----------------------------CTTTGTTTTGGTACAGA---------------------CAGTTT-CCCGGTGGAAGGATGGAATTCCTTATCTATCAGGATAGTAATCAAGCAAATGCA--AGGAGGGATCGCTACTCTGT-AAAC--TTTCAAAAGGGAAAAAAAATCATCAGC-------------CTCACCATCTCTTCCTTGCACCTGGCTGACTCAGCGAAGTATTTCTGTGCTCTCTGGGAATAC Ovis_aries_TRDV3_F --------GACAATGTTGAGAGCGCT--------------------------GATGTACCTA---CAGTGTATAAAAAAGAGGGGGAATCT-GTGACCGTGGAATGCAAGTTCTCAGTCAGCTATA----------------------CATACTATA-----------------------------TGATGTACTGGTATCGA---------------------CAGCCT-TCCAGCGGAGAGATGATTTACATGATTAATATTTATTCTCAAAGCAAGCAGACA--AGGGAAGGACGATACTCTGT-GGAA--TTTTACAAACCCAACCAAATGCTGAAA-------------CTCACCATCTCAGCCTTGACGCTGAGTGACTCGGCCGTCTATTTCTGTGGTGTCAGAGAGTTC Ovis_aries_TRDV4_F --------------TGTAACCAAGTGA--------------------CCCAGAGCTCCCCGG--AGCAGAGAGTGGCAAGTGGCCGAGAG--GTGACACTGCAGTGCACCTTCCAAACCACATATT-----------------------CAAATCCAG----------------------------ACTTATACTGGTACCGAAAGACGCCAGATGCTGTCTTCCAGTTTGTCCTGTACAGGGACAACACT-------------AGATCCCGTGATGCGGATTTT--GCTCGGGGTAGATTTACTGT-GCAG--CATAGCGTGAGAAGCAAAACCTTCCAC-------------TTGGTGATCTCCTCTGTGAGGCCTGAAGACACTGCCACTTACTACTGTGCTTT--GGAGCTCC Ovis_aries_TRVD1S15_P --------------GCCCAGAAAGTTA--------------------TTCAAGACCAGCCAG---ACATATCCAGTCAAGTTGGGGAGTCA-GCCACCATGAACTGTCAGTATGAGACAAGTTGGA----------------------GAAGTTATA-----------------------------ACAGTTTTTAGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGATTTACCTTATCGGCCAGAATTCTTATAGCCCAAATGCA--AGGGATGGCCGCTACTCCAT-AAAT--TATCAGAGATCCCGTAAAGCCATCAGC-------------CTCATTATCTCAGCCTTATAGCTGGAAGACTCTGCAAAGTACTTTTGTGCTCTCTGGGAACT- Ovis_aries_TRVD1S16_F --------------GCCCAGAAAGTTA--------------------CTCAAGACCAGTCAG---ATGTATCCAGCCAAGTGGGGCAGTCA-GTCACCCTGAATTGTCAGTATGAAACAAGCTGGA----------------------GCTATTACA-----------------------------ACCTTTTTTGGTACAAG---------------------CAACTT-CCCAGTGGACAGATGACTTACGTTATTCGTCAGAGTTCATTAGTCACGAATGCA--ACGAAAGACCGCTACTCGAT-AAAC--TTTAAGAAAGCGGATAAATCCATCAGC-------------CTCACCATTTCAGCCT----------------------------------------------- Ovis_aries_TRVD1S17_F --------------GCGCAGAGAGTTA--------------------TTCAAGACCAGCCAG---ACATATCTGGTCAACTGGGACAGTCA-GTCACCCTGAACTGTCGGTATGGAACAACGTGGA----------------------GCTATTACT-----------------------------ACGTGTTTTGGTACAAG---------------------CTGCTT-CCCAATGGAGAGATGATTTACCTTATTCATCAGGTTTCTTCTGGCCAGAATGCA--AGGAATGGCCGCTACTCTGT-AAAT--TTTCAGAAAGCTCGTAAATCCATCAGC-------------CTCACCATCTCAGATTTACAGCTGGAAGACTCTGCAGAGTATTTCTGTGCTCTCTGGGAGCT- Ovis_aries_TRVD1S18_F --------------GCCCAGAGAGTTA--------------------CTCAAGACCAGCCAG---ACATTTCCAGTCAAGTTGGGGAGGTA-GTCACACTGAGCTGTCGATATGAGACAATTCAGA----------------------GCCGTTACA-----------------------------ACATTTTTTGGTACAAA---------------------CAACTT-CCCAGTGGAGAGATGATTTACCTTATTGGTCATGATTCTTCTAGCCAGAATGCA--AGATATGGCCGTTACTCTGT-AAAT--TTTAAGATATCACGTAAATTCATCAGC-------------CTCACGATTTCAGACTTAGAGCTGGAAGACTCTGCAAAGTACTTCTGCACTCTCTGGGAACT- Ovis_aries_TRVD1S19_F --------------GCCCAGAAAGTTA--------------------CTCAAGACCAGCCAG---ATATATCCAGCCAAGTGGGGCAGTCA-GTCACCCTGAACTGTCGGTATGAAACAAGCTGGA----------------------GAGTTTACT-----------------------------ATCTCTTTTGGTACAAG---------------------CAACTT-CCCAGTGGACAGATGACTTACCTTATTCAACAGTATTCAGGATACAGCAATGCA--AGGAATGGCCGCTACTCTGT-AAAC--TTTAAGAAAGCAGATAAATCCATCAGC-------------CTCATCATTTCATCCTTACAGCTGGAAGATTCTGCAAAGTACTTCTGTGCTCTCTGTGACT-- Ovis_aries_TRVD1S20_F --------------------AGTGTTA--------------------CTCAAGACCAGCCAG---ACATACTCAGTGAAGTGGGGAAGACA-ATCACGCTGAACTGTCGGTATGAAACAAGTTGGG----------------ACATGTTGAGCTACT-----------------------------ACATTTTTTGGTACAAG---------------------CAGCTT-CCCAGTGGAAAGATGACTTATCTTATTCGTCAGCATTCAGATGATGGGAATGCA--AGGGACGGCCGCTACTCTGT-AAAC--TTCCAGAAAGCTCATAAGTCCATCAGC-------------CTCACCATTTCAGCCTTAGAGCTGGAAGATTCTGCAAAGTACTTCTGCATTCTCAGAGTAT-- Ovis_aries_TRVD1S21_F --------------GCCCAGAAAGTTA--------------------TTCAAGATCAACCAG---ACATATTCACTCAGATTGGAGAGGCA-GTCACCATGAACTGTCTGTGTGAAACAAGTTGGA----------------------GCAGTTACA-----------------------------ACATTTTTTGGTATAAG---------------------CAACCC-CCCAGTGGAGAGATGATTTTCCTTA---------------------------CA--AGGGATGGCCACTACTCTAT-AAAC--TTTCAGAGATCATGTAAATCCTCCAGC-------------CTCACCATTTCAACCTTACAACTGGAAGATTCTGCAAAGTACTCCTCTGCTCTCTTTGAATT- Ovis_aries_TRVD1S22_F --------------GCCCAGAGAGTTA--------------------CTCAAGACCAGCCAG---ACATTTCCAGTCAAGTTGGGGAGGTA-GTCACACTGAGCTGTCGATATGAGACAATTCAGA----------------------GCCGTTACA-----------------------------ACATTTTTTGGTACAAA---------------------CAACTT-CCCAGTGGAGAGATGATTTACCTTATTGGTCAGGGTTCTTCCAGCCAGAATGCA--AGGTATGGCCGCTACTCTGT-GAAT--TTACAGAGATCACGTAAATCCATCAGC-------------CTCACGATTTCAGACTTAGAGCTGGAAGACTCTGCAAAGTACTTCTGCGCTCTCTGGGAACT- Ovis_aries_TRVD1S23_F --------------GCCCAGAAAGTTA--------------------CTCAAGACCAGCCAG---ACATAGCCAGTCAAGTTGGGGAGTCA-GCTGCCATGAACTGTCAGTATGAGACAAGTCGGA----------------------ACAGTTATA-----------------------------ACATTTTTTGGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGATTTACCTTATTGGTCAGAATTCTTACAGCCCGAATGCA--AGGGATGGCCGCTACTCCAT-AAAT--TTTCTGAGATCCCTTAAAGCCATCAGC-------------CTCATTATCTCAGCCTTAAAGCTGGAAGACTCGGCAAAGTACTTCTGTGCTCTCTGGGAACT- Ovis_aries_TRVD1S24_F -----------GTAGCCCAGAAAGTTA--------------------TTCAAGACCCGCCAG---ACATATCCAATCGAACTGGGGAATCA-GTTACCCTAAATTGTCGGTATGAAACAAGCCAGA----------------------GCCGTTACA--------------------------------TTTTTTGGTACAAG---------------------CACCTT-CCCAGTGGAGAGATGATTTTCCTTA---------------------------CA--AAGGATGGCCGCTTCTCTAT-ACAT--TTTGACAGAGTACATAAATCCTCCAGC-------------CTCACCATTTCAACCTTACAATTGGAAGATTCTGCAAAGTACTTCTGCGCTCTCTGGGAACT- Ovis_aries_TRVD1S25_F --------------GCCCAGAAAGTTA--------------------CTCAAGACCAGCCAG---ATATATCCAGCCAAGTGGGGCAGTCA-GTCACCCTGAACTGTCGGTATGAAACAAGCTGGA----------------------GAGTTTACT-----------------------------ATCTTTTTTGGTACAAG---------------------CAACTT-CCCAGTGGACAGATGACTTATGTTATTCGTCAGGGTTCAGAAATGACAAACGCA--AGGAAAGACCGCTACTCTGT-AAAC--TTTAAGAAAGCAGATAAATCCATCAGC-------------CTCATCATTTCATCCTTACAGCTGGAAGATTCTGCAAAGTACTTCTGTGCTCTCCGTGAACT- Tursiops_truncatus_TRDV1_1_F ---GATTTGGTGCGGCCCAGAAAGTTA--------------------CTCAAGTCCAGCGAG---CCATGTCCAGTCAGCTAGGGGAGGCG-GTCACCTTGAGCTGTCAGTATGAAACAAGCTTGA----------------------GCTGGTACG-----------------------------ATATTTTTTGGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTTCCTTATTCATCAGAGTTCTTCTGGCCAAAATGCA--AAGAATGGCCGCTATTCTGT-AAAC--TTTCAGGAAAGACATAAATTCATCAGC-------------CTCACCATTTCAGGCTTACTGGTGGAAGATTCTGCAAACTACTTCTGTGCTCTCTGGAACT-- Tursiops_truncatus_TRDV1_1D_F ---GATTTGGTGCGGTCCAGAAAGTTA--------------------CTCAAGTCCAGCCAG---CCATATCCAGTCAGCTAGGGGAGGCG-GTCACCTTGAGCTGTCAGTATGAAACAAGCTTGA----------------------GCTGGTACG-----------------------------TTATTGTTTGGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTTCCTTATTCATCAGATTTCTTCTGACCAAAATGCA--AAGAATGGCCGCTATTCTGT-AAAC--TTTCAGAAAAGACATAAATTCATCAGC-------------CTCACCATTTCAGCCTTACTGGTGGAAGATTCTGCAAACTACTTCTGTGCTCTCTGGGACCT- Tursiops_truncatus_TRDV1_1N_F ---GATTTGGTGCGGCCCAGAAAGTTA--------------------CTCAACTCCAGCCAG---CCATATCCAGTCAGCTAGGGGAGGCG-GTCACCTTGAGCTGTCAGTATGAAACAAGCTTGA----------------------GCTGGTACG-----------------------------TTATTGTTTGGTATAAG---------------------CAGCTT-CCCAGTGGAGAGATGACTTTCCTTATTCATCAGATTTCTTCTGACCAAAATGCA--AAGAATGGCCGCTATTCTGT-AAAC--TTTCAGAAAAGACATAAATTCATCAGC-------------CTCACCATTTCAGGCTTACTGGTGGAAGATTCTGCAAACTACTTCTGTGCTCTCCGGGAACT- Tursiops_truncatus_TRDV2_F ---------------------GAGTCATGTCAGCTGTCACGTTGGGCCTCAAAACCAAGCAAGGAGTGTGTCT------GTGGGGGAATCT-GTCACCCTCAGGTGCTC-CATGAAAGGAGACTCC------------------ATCAGTAACTACT-----------------------------ATACCTTCTGGTACAGG---------------------AAAACA-CCGGGTAACACAATGACTC-----------------TCATATACCGAGAAGGGGGCACATATGGCCCTGGTTTCGA-AGACAACTTCCAAGGTGAAATTGATCTTTCAAACAACCAGGCTGTGCTGAATATCCTGGAGGCATCAGAGAGAGATGAAGGATCTTACTACTGTGCCTC----GACCAC Tursiops_truncatus_TRDV4_P ACAAGGACGTGCTGTGTAACCAAGTGA--------------------CCCA-GATTTCCCAG---GAGCAGATACTGGTGAGTGGCAGTGAGGTGACACTACAATGCATTTTCCAAACCACATACT-----------------------TAGATCCAG----------------------------TCTTATACTGGTACCAAATAAGACCAGATCGTTCCTTCTAGTTTGTCCTGCACAGGAATAACATT-------------AAATCCCATGATGCGGATCTT--GCTCGGGGTAGATTTTCCGT-GCAG--CACAGCCTGACCCACAAAACCTTCCAC-------------TTGGTGATCTCCTCAGTGAGGCCTGAAGACAGTGCCACTTACTACTGTGGCTTGCGGTCC--- ; END; [ The following blocks are output data for analysis step 18492 ] BEGIN TREES; TITLE Tursiops_truncatus_7B_tr_TRDV; LINK TAXA = TaxaForAnalysisStep18492; TREE '7B_tr_TRDV' = [&R] (((((((((((((Ovis_aries_TRDV1S7_F:0.03307,Ovis_aries_TRVD1S20_F:0.04279)0.62:0.00929,(Ovis_aries_TRDV1S13_F:0.0292,Ovis_aries_TRDV1S14_F:0.04666)0.99:0.03727)0.34:0.00949,(Ovis_aries_TRDV1S2_F:0.084,Ovis_aries_TRDV1S6_F:0.06083)0.38:0.00517)0.23:0.00551,(Ovis_aries_TRDV1S1_F:0.06138,Ovis_aries_TRDV1S4_P:0.04897)0.62:0.01475)0.37:0.0111,(Tursiops_truncatus_TRDV1_1D_F:0.00401,(Tursiops_truncatus_TRDV1_1_F:0.00832,Tursiops_truncatus_TRDV1_1N_F:0.00547)0.44:0.00289)1.00:0.07705)0.10:0.00144,(Ovis_aries_TRVD1S16_F:0.05525,((Ovis_aries_TRVD1S25_F:0.01225,Ovis_aries_TRVD1S19_F:0.00844)0.92:0.02321,(Ovis_aries_TRDV1S3_F:0.0,Ovis_aries_TRDV1S12_F:0.0)1.00:0.03541)0.50:0.0051)0.83:0.02741)0.14:0.00109,((Ovis_aries_TRDV1S5_P:0.03772,Ovis_aries_TRVD1S17_F:0.03124)1.00:0.05582,(((((Ovis_aries_TRDV1S10_F:0.0312,Ovis_aries_TRVD1S18_F:0.01707)0.54:0.01042,Ovis_aries_TRDV1S9_P:0.03096)0.55:0.0119,Ovis_aries_TRVD1S22_F:0.02948)1.00:0.06105,Ovis_aries_TRVD1S24_F:0.10447)0.24:0.00222,((Ovis_aries_TRDV1S8_P:0.04062,Ovis_aries_TRVD1S21_F:0.02835)0.99:0.04393,(Ovis_aries_TRDV1S11_F:0.045,(Ovis_aries_TRVD1S15_P:0.03172,Ovis_aries_TRVD1S23_F:0.03034)0.85:0.01017)1.00:0.05779)0.47:0.0106)0.50:0.01643)0.29:0.00371)0.57:0.01441,(Camelus_dromedarius_TRDV1S6_F:0.04754,(Camelus_dromedarius_TRDV1S4_F:0.04094,(Camelus_dromedarius_TRDV1S1_F:0.01997,(Camelus_dromedarius_TRDV1S3_F:0.01874,(Camelus_dromedarius_TRDV1S2_F:0.00552,Camelus_dromedarius_TRDV1S5_F:0.02897)0.44:0.00884)0.30:0.00762)0.24:0.00734)0.43:0.00764)1.00:0.04864)0.51:0.0099,Homo_sapiens_TRDV1_F:0.14138)0.98:0.04709,(Ovis_aries_TRDV2_F:0.10148,(Camelus_dromedarius_TRDV2S1_F:0.01799,Camelus_dromedarius_TRDV2S2_F:0.01649)1.00:0.09507)0.96:0.04976)0.54:0.01059,Ovis_aries_TRDV3_F:0.21329)0.80:0.04533,(Homo_sapiens_TRDV2_F:0.11371,Tursiops_truncatus_TRDV2_F:0.08629)1.00:0.20019)1.00:0.00291,(Homo_sapiens_TRDV3_F:0.12466,(Camelus_dromedarius_TRDV4_F:0.07291,(Ovis_aries_TRDV4_F:0.06872,Tursiops_truncatus_TRDV4_P:0.0761)0.67:0.0133)1.00:0.08741)1.00:0.14); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr96520] END;