#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on July 17, 2025; 22:00 GMT TreeBASE (cc) 1994-2008 Study reference: Tuthill D. 2003. Genetic variation and recombination in Penicillium miczynskii and Eupenicillium species. Mycological Progress, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1062] [ The following blocks are input data for analysis step 1862 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1862; DIMENSIONS NTAX=18; TAXLABELS Eupenicillium_SS133.1 Eupenicillium_anatolicum Eupenicillium_cinnamopurpureum Eupenicillium_shearii Eupenicillium_tropicum_SC42.1 Eupenicillium_tropicum_SS133.17 Penicillium_chermesinum Penicillium_citrinum Penicillium_decanturense Penicillium_manginii Penicillium_miczynskii Penicillium_miczynskii_N10 Penicillium_paxilli Penicillium_peoriense Penicillium_sartoryi Penicillium_sumatrense Penicillium_waksmanii Penicillium_westlingii ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M135] TITLE ISSR_micz_clade; LINK TAXA = TaxaForAnalysisStep1862; DIMENSIONS NCHAR=1161; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Eupenicillium_SS133.1 AAGGATCATTACTGAGTGAGGGCCCCCTGGG-TCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGACACCT-GTGAACTCTGTCTGAAGT-TGCAGTCTGAGAAACTAT-TTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAATAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCGTCCCCCCCCTC--CCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGCTTGCCGACCCCCTCAATCTA--TTTTT-CAGGTTGACCTCGGATCAGGTAGG-ATACC-GCTGAACTT-AAGCATATCAATAA-GCGGGAGGAAAAGAAACCAACCGGGATTACC-TAGTAACGGCGAGTGAAGCGGTAAGAGCTCAAATTTGAAAGCTGGCCCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGT???????????? Eupenicillium_anatolicum AAGGATCATTACCGAGTGAGGGCCCCTCCGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTCGGCGGGCCCGCCATA-CGGCCGCCGGGGGGCAC--CTGCCCCCGGGCCCGCGCCCGCCGAAGACACCT-GTGAACGCTGTCTGAAG-TTGCAGTCTGAGACAACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCACCGTCCCCCGC-C--CGCGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGCAGGCCCGGCCGGCGCCAGCCGACCCCCCTCAACCAAATTTCTCCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCTCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Eupenicillium_cinnamopurpureum AAGGATCATTACCGAGTGAGGGCCC-TCTGGGTCCAACCTCCCACCCGTGTTTATC-GTACCT-TGTTGCTTCGGCGGGCCCGCCGTC-AGGCCGCCGGGGGCTTC--GTGCCCC-GGGCCCGTGCCCGCCGAAGACACCA-TTGAACGCTGTCTGAAGATTGCAGTCTGAG-CGATTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGT-TGTTGGGTCTACGTCCCCCC---------GGGGACGGGCCCGAAAGGCAGCGGCGGCATCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCC-AACCATT---TTTCTC-AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTACCCTGGAACGGGTCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGTCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCACGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCCTCGGGGCGTCTTATAGCCGAGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Eupenicillium_shearii AAGGATCATTACTGAGTGAGGGCCCTCTGGG-TCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGACACCT-GTGAACTCTGTCTGAAGT-TGCAGTCTGAGAAACTAT-TTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAAATAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCGTCCCCCCCCTC--CCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGCTTGCCGACCCCCTCAATCTA--TTTTT-CAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTACCCTAGTAACGGCGAGTGAAGCGGTAAGAGCTCAAATTTGAAAGCTGGCCCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Eupenicillium_tropicum_SC42.1 AAGGATCATTACCGAGTGAGGGCCC-TCTGGGTCCAACCTCCCACCCGTGTTGCAC-GAACCTGTGTTGCTTCGGCGGGCCCGCCGCCTAGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGCCCCCCTCTGAACGCTGTCTGAAG-TTGCAGTCTGAGACAACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGG-CCCCGTCCCCCCCGC-GCCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCCCAACCTTTAAATTTTCTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTTTAAGCATATCAATTAAGCGG-AGGAAAAGAAACCAACCGGGATTGCC-TAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCTCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTT?GGGAACGGCCCCGATCTAAGTGCCCTGGAACGG?C?GTCATAGAGGGTGAGAATCCCGT?TGGGATGGGGTGTCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTT?ATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATG????????????? Eupenicillium_tropicum_SS133.17 AAGGATCATTACCGAGTGAGGGCCC-TCTGGGTCCAACCTCCCACCCGTGTTGCAC-GAACCTGTGTTGCTTCGGCGGGCCCGCCGCCTAGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGCCCCCCTCTGAACGCTGTCTGAAG-TTGCAGTCTGAGACAACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGG-CCCCGTCCCCCCCGC-GCCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGTAAGCCCGGCCGGCGCCAACCGACCCCCAACCTTTAAATTTTCTCA?GTTGACCTCGGATCAAGTA?GGATACCCGCTGAACTT-AA?CATATCAATAA?????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????????? Penicillium_chermesinum AAGGATCATTACCGAGTGCGGGCCC-TCTGGGTCCAACCTCCCACCCGTGTTTATC-GTACCT-TGTTGCTTCGGCGGGCCCGCCGCC-AGGCCGCCGGGGGCATC---CGCCCC-GGGCCCGCGCCCGCCGAAGACACCC-CTGAACGCTGTCTGAAGATTGCAGTCTGAG-CGATTA-TTAAATTATTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATACGTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCCCTGGTATTCCGGGGGGCATGCCTGTCCGAGCGTCATTTCTGCCCTCAAGCCCGGCTTGTGTGTTGGG-CCGCGTCCCCCC---------GGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGCAGGCCCGGCCGGCGCCAGCCGACCCC-AACCATTC--TTTCTC-AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACAGGGATTGCCCCAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGAGGCAGCCCCCGTCTAAGTACCCTGGAACGGGTCGTCATAGAGGGTGAGAATCCCGTACGGGACGGGGTGTCTGCCACCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCACGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCTCGGAATGTAACGCCCCCCGGGGCGTCTTATAGCCGAGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_citrinum AAGGATCATTACCGAGTGCGGGCCCCTCGGGGCCCAACCTCCCACCCGTGTTGCCC-GAACCTATGTTGCCTCGGCGGGCCC---------------------------------------CGCGCCCGCCGACGGCCCCC-CTGAACGCTGTCTGAAG-TTGCAGTCTGAGACCTATAACGAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTGTGTGTTGGG-CCCCGTCCCCCCC-G--CCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTAGTAGGCCCGGCCGGCGCCAGCCGACCCCCAACCTTTAATTATCTC-AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAACGGCCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGGTGGCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGCGGGGTTCAGCCGGCACTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCTCTGGAAGGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_decanturense AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGCCACCT-GTGAACGCTGTCTGAAGTATGCAGTCTGAGACAATTA-TTAAATTAATTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCCAGCCCGGCTGGTGTGTTGGGCCCCG--CCCCCCTTC--CCGGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCCCTCAATCTA--TTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCTCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_manginii AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCG-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCG??GAAGCCCCCT-GTGAACGCTGTCTGAAGTATGCAGTCTGAGACAATTA-TTCAATTAATTAAAACTTTTCAACAACGGATCT?TTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTATGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCCAGCCCGGCTGGTGTGTTGGGCCCCG--CCCCCCTTC--CCGGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGCAGGCCCGGCCGGCGCCAGCCGACCCCCTCAATCTA--TTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTACCCTAGTAACGGCGAGTGAAGCGGTAAGAGCTCAAATTTGAAAGCTGGCCCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAAT?????????????? Penicillium_miczynskii AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTTGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CTGCCCCCGGGCCCGCGCCCGCCGAAGCCACCT-GTGAACTCTGTCTGAAGTATGCAGTCTGAGACAATTA-TTAAATTAATTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCCAGCCCGGCTGGTGTGTTGGGCCCCG--CCCCCCTTC--CCGGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCCCTCAATCTA--TTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGTAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_miczynskii_N10 AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTTGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CTGCCCCCGGGCCCGCGCCCGCCGAAGCCACCT-GTGAACTCTGTCTGAAGTATGCAGTCTGAGACAATTA-TTAAATTAATTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCCAGCCCGGCTGGTGTGTTGGGCCCCG--CCCCCCTTC--CCGGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCCCTCAATCTA--TTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGTAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAGCAGCACGTGAAATTGTTGAAAGG?AAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGG?CGCCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATG????????????? Penicillium_paxilli AAGGATCATTACCGAGTGAGGGCCCTCTGGG-TCCAACCTCCCACCCGTGTTTAACTGTACCT-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCTCTCCTGCCCCCGGGCCCGCGCCCGCCGAAGACACCT-GTGAACGCTGTCTGAAGTATGCAGTCTGAGAAAACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAATTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCTCGTCCCCCC---------GGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCGT-TAGGCCCGGCCGGCGCCAGCCGACCCCCCCTCAATC--TTTAACCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCTGCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCCCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGGGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_peoriense AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCTTTGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCTT--CTGCCCCCGGGCCCGCGCCCGCCGAAGACCCCT-GTGAACGCTGTCTGAAGTATGCAGTCTGAGA-AACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGTCCCCCCCTC-GTCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCC-AACCCTAAATTTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCTCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCCCGCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGTGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_sartoryi AAGGATCATTACCGAGTGCGGGCCCCTCGGGGCCCAACCTCCCACCCGTGTTGCCC-GAACCTATGTTGCCTCGGCGGGCCC---------------------------------------CGCGCCCGCCGACGGCCCCC-CTAAACGCTGTCTGAAG-TTGCAGTCTGAGACCTATAACGAAATTGGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTGTGTGTTGGG-CCCCGTCCCCCCC-G--CCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTAGTAGGCCCGGCCGGCGCCAGCCGACCCCCAACCTTTAATTATCTC-AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAACGGCCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGGTGGCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATCGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCCCGCGGGGTTCAGCCGGCACTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCTCTGGAAGGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_sumatrense AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCCTTGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCTC--CTGCCCCCGGGCCCGCGCCCGCCGAAGCCCCCC-CTGAACGCTGTCTGAAGT-TGCAGTCTGAGA-AACTAGCTAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCACGGCTTGTGTGTTGGGCCCCCGTCCCCCCCTCTGCCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTTGTAGGCCCGGCCGGCGCCAGCCGACCCC-AACCCTAAATTTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATGA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCTCCTTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCCCGCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGTGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_waksmanii AAGGATCATTACTGAGTGAGGGCCCCTCGGGGTCCAACCTCCCACCCGTGTTTAAC-GAACCT-TGTTGCTTCGGCGGGCCCGCCTCA-CGGCCGCCGGGGGGCAT--CCGCCCCCGGGCCCGCGCCCGCCGAAGCCACCT-GTGAACGCTGTCTGAAGTATGCAGTCTGAGACAATTA-TTAAATTAATTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCCAGCCCGGCTGGTGTGTTGGGCCCCG--CCCCCCTTC--CCGGGGGGGCGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTTGTCACCCGCTCTTGTAGGCCCGGCCGGCGTCAGCCGACCCCCTCAATCTA--TTTTTTCAGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATAA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAGCGGTCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTATGGGATGGGGTGCCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGATCAGACTCGCTCGCGGGGTTCAGCCGGCCTTCGGGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGCCGGTCAAAGGCCCCTGGAATGTAACGCCTCTCGGGGCGTCTTATAGCCAGGGGTGCCATGCGGCCTGCCCGGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAGCGACC Penicillium_westlingii AAGGATCATTACCGAGTGCGGGCCCCTCGGGGCCCAACCTCCCACCCGTGTTGCCC-GAACCTATGTTGCCTCGGCGGGCCC---------------------------------------CGCGCCCGCCGACGGCCCCC-CTGAACGCTGTCTGAAG-TTGCAGTCTGAGACCTATAACGAAATTAGTTAAAACTTT-CAACAACGGATCTCTTGGTTCCGGCATCGATGAAGAACGCAGCGAAATGCGATAACTAATGTGAATTGCAGAATTCAGTGAATCATCGAGTCTTTGAACGCACATTGCGCCCTCTGGTATTCCGGAGGGCATGCCTGTCCGAGCGTCATTGCTGCCCTCAAGCCCGGCTTGTGTGTTGGG-CCCCGTCCCCCCC-G--CCGGGGGGACGGGCCCGAAAGGCAGCGGCGGCACCGCGTCCGGTCCTCGAGCGTATGGGGCTTCGTCACCCGCTCTAGTAGGCCCGGCCGGCGCCAGCCGACCCCCAACCTTTAATTATCTC-AGGTTGACCTCGGATCAGGTAGGGATACCCGCTGAACTT-AAGCATATCAATGA-GCGG-AGGAAAAGAAACCAACCGGGATTGCCCTAGTAACGGCGAGTGAAGCGGCAAGAGCTCAAATTTGAAAGCTGGCCCCCTCGGGGTCCGCATTGTAATTTGCAGAGGATGCTTCGGGAACGGCCCCCATCTAAGTGCCCTGGAACGGGCCGTCATAGAGGGTGAGAATCCCGTCTGGGATGGGGTGGCCGCGCCCGTGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAATTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCCGGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGCGACCAGACTCGCTCGCGGGGTTCAGCCGGCATTCGTGCCGGTGTACTTCCCCGCGGGCGGGCCAGCGTCGGTTTGGGCGGTCGGTCAAAGGCCCTCGGAAGGTAACGCCCCTAGGGGCGTCTTATAGCCGAGGGTGCAATGCGACCTGCCTAGACCGAGGAACGCGCTTCGGCTCGGACGCTGGCATAATGGTCGTAAACGACC ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = ISSR_micz_clade) = N: 1-1161; CODONPOSSET CodonPositions (CHARACTERS = ISSR_micz_clade) = N: 1-1161; END; [ The following blocks are output data for analysis step 1862 ] BEGIN TREES; TITLE Tb6637; LINK TAXA = TaxaForAnalysisStep1862; TREE Fig._3 = [&R] ((((((((Penicillium_miczynskii,Penicillium_miczynskii_N10),Penicillium_waksmanii),Penicillium_decanturense,Penicillium_manginii),(Eupenicillium_shearii,Eupenicillium_SS133.1)),Penicillium_paxilli,(Penicillium_sumatrense,Penicillium_peoriense)),Eupenicillium_anatolicum),(((Penicillium_citrinum,Penicillium_sartoryi),Penicillium_westlingii),(Eupenicillium_tropicum_SS133.17,Eupenicillium_tropicum_SC42.1))),Eupenicillium_cinnamopurpureum,Penicillium_chermesinum); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5817] END;