#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on May 22, 2024; 14:50 GMT

TreeBASE (cc) 1994-2008

Study reference:
Du plessis I.L., Druzhinina I., Yarden O., & Jacobs K. 2016. The diversity of Trichoderma
spp. in South Africa. Mycologia, .

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19505]

[ The following blocks are input data for analysis step 18638 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep18638;
        DIMENSIONS NTAX=25;
        TAXLABELS
            'Hypocrea flaviconidia GJS_9949'
            'Hypocrea neorufa GJS_96132'
            'Hypocrea neorufa GJS_96135'
            'Hypocrea pezizoides GJS_01257'
            'Trichoderma asperelloides GJS_04116'
            'Trichoderma asperelloides GJS_996'
            'Trichoderma asperellum GJS_01294'
            'Trichoderma asperellum GJS_91162'
            Trichoderma_eijii_8139
            'Trichoderma eijii TUFC_100002'
            'Trichoderma evansii DIS_341HI'
            'Trichoderma evansii Dis_380a'
            'Trichoderma hamatum DAOM_167057'
            'Trichoderma hamatum GJS_04203'
            'Trichoderma lickfeldtiae GJS_04196'
            'Trichoderma lieckfeldtiae GJS_0501'
            'Trichoderma paucisporum GJS_0113'
            'Trichoderma paucisporum GJS_0369'
            'Trichoderma pubescens DAOM_166162'
            'Trichoderma pubescens DAOM_229987'
            'Trichoderma restrictum PPRI_19367'
            'Trichoderma strigosum DAOM_166121'
            'Trichoderma theobromicola Dis_376f'
            'Trichoderma theobromicola Dis_85f'
            'Trichoderma yunnanense CBS_121219'
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37065]

	TITLE Hamatum_clade_fig._3;
	LINK TAXA = TaxaForAnalysisStep18638;
	DIMENSIONS NCHAR=790;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                               10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790]
[                                                .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
'Hypocrea flaviconidia GJS_9949'        TCTGGCTGCCTTGTTTGGTTTTTAGTGGGG-GCCAATTTGGCAGCAACCCCGCTATCGCCACTGGCCCTCGTCCATCGCCCAACACACTCTCGAGTT-----------------------CTCTTTTGGGTTCATGGTGCTAATCATACTTCGATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTTGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTCCAACATCATCTCGCTAACGCCCCGGGCGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCGACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Hypocrea neorufa GJS_96132'            TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGT---TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGT---CTCCATTGCACCGTCTGCCCTCAATGCTTTGTGATTCATTGTGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCCAGACCGCGTCTGAAGATGGCCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTT-CTGCAGTCCGCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAACACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Hypocrea neorufa GJS_96135'            TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGT---TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCG--CAACACAATTTGTCTCCTCCATTGCACCGTCTGCCCTCAATGCTTTGTGATTCATTGGGCTGACCAGGTATTCAATTATAGGAAGCCGCTGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCTGTTCTTCTCCAGACCGCGTCTGAAGATGGCCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTT-CTGCAGTCCGCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAACACAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCCCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Hypocrea pezizoides GJS_01257'         TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTATCAATTTGGCAGCAACCCCGCTATCGCCACTGCCCCTCGTCCATCGCCCAACACACTCTACTT---------------CGAATCTTT-ATTTTTGTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTAGCC--CTCGTCGATACCTC---GCCATCATTCTAACGCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCGCAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGCCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma asperelloides GJS_04116'   TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCTATTTGTTCAATCGCATCGTCTATTTTCAA-TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACT---TCAGTCGACATTGCAAGATCGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma asperelloides GJS_996'     TCTCGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGACGGCAACCCCACTATCGCCACTGTACCTCTTCCATCATCCACCACATGCT-TTTGTTCAATCGCATCGTCTATTTTCAA-TATCTCTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACACT---TCAGTCGACATTGCAAGATCGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma asperellum GJS_01294'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCG-----------TCTTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTGCTATCGACATTCCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTATTTCTTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma asperellum GJS_91162'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCCATCACCCACCACATGCTATTTGCTCAATCGCGTCG-----------TCTTTTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTGGACTCTTCTGCTATCGACATTCCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTATTTCTTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCTAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
Trichoderma_eijii_8139                  TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTT---------------CAAATCTCTAAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCA--CTCGTCGATACTTCAAGGCCATCATTCTAACGCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma eijii TUFC_100002'         TCTTGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCGCTGCCCCTCGTCCATCGCCCAACACACTCAACTT---------------CAAATCTCTAAGTTATTTAATTCATTTTATTAATCATACTCGACTCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCCA--CTCGTCGATACTTCAAGGCCATCAT??????GCCCCGGGTGCGTAGAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTCCTGTGGTCCCCTCGCGGACGTTATTTCTCACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAGCCCCCCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma evansii DIS_341HI'         TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAA----------------TTAATTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTTCAAGACCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma evansii Dis_380a'          TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGTCACTGTCCCT---CCATCACCCGACACATTCTACTTGTCAA----------------TTAATTGATTTTGGTTCATTGTACTAATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTAGTCGATATTTCAAGACCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma hamatum DAOM_167057'       TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAATTTGGCAGTGACCCCGCCATCGCCACTGTTCCTCATGCACTACCCAACACATGCTACGTAT-----------------------AACTGCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTGGTCACTATCCCAACATCATCATGCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma hamatum GJS_04203'         TCTGGCTGCCTTGGTTGGTTTTTAGTGGGGTGCCAATTTGGCAGTGACCCCGCCATCGCCACTGTCCCTCATGCAGTACCCAACATATTCTACAGT------------------------AACGTCTTGGTTCATTGTGCTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTCCGA--CTGTTCACTATCCCAACATCATCATGCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma lickfeldtiae GJS_04196'    TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCGGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTTGGTCGATATTTCGAGATTGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTGGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma lieckfeldtiae GJS_0501'    TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAAGTTGGCAGCAACCCCGCTATTGCCACCGTCGCT---CCATCGCCCAGCATATTCCACTTGCTCAATCGCATCGTCGGTCTTCAATTCTTTTCGGTTCATTGTGCTGATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTGCGGTCCTACTTTGGTCGATATTTCGAGATTGTCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma paucisporum GJS_0113'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCTGTTCTCAATTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTATACTTGACATGTCAAGATCATCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma paucisporum GJS_0369'      TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATCTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACACATTTTACCTGCTCAGTCGTATCGTCTGTTCTCAATTCTCTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCGGTCATCGTATACTTGACATGTCAAGATCATCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGGACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma pubescens DAOM_166162'     TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAA------------------TCAATTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTGTCGGTAATA-TCCAACATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma pubescens DAOM_229987'     TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGCCAATTTGGCAGCAACCCCGCTATTGCCACTGT--CTCACACATTGCCCAACATATTTTACTTCAA------------------TCAATTCTGTTTGGTTCATTGTACTAATCATACTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTGTGGAAGTTCGAGACTCCCAAGTATTATGTCACCGTCATTGGTATGTTTTCAGTTCGACTGTCGGTAATATTCCAACATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma restrictum PPRI_19367'     TCTGGCTGCCTTGTTTGGTTTTTAGTGGGGTGTCGATTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCATCGCTCAACACATTCTGCTT-----GTCAATCAATTTATCTCTGTTTCATTGTGGTTCATGGTGCTAATTGTACTTCAATCAATAGGAGGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTCTTGGATGCTGCTTCGGTCGACATCTCGATATCATCATTCTAACGCCCCGGGTGCGTAAAAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACCCTTTGT--------TTTCGGTATTTTCTTCATTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCTCGGGGGATCGGCGTTGGGGATCGGGACCCCTCAC-CGGGTGCCGGCCCCGAAATGCAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCAGCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma strigosum DAOM_166121'     TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGCCAGTTGGCAAGCAACCCCGCTATCGCCACTGTAGCTCGTCCATCGCCCAACACATTCTACTC-TACCATCGCATCGTCTTTGCCTCGAATCTCTTGATTCATTATGCTGATCATCTTTCAATCAATAGGAAGCCGCCGAACTCGGAAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTTAGTTTC---CTCATTGACATCTCGAAATCATCATTCTAACGCCCCGGGCGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTTTTACTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGGTCGGCGTTGGGGATGGGAACCCCTAAGACGGGTCCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma theobromicola Dis_376f'    TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCA-TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCTGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTCTACTTGACATGTCAAAATCATCAATCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma theobromicola Dis_85f'     TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTAA-TTTGGCAGCAACCCCGCTATCGCCACTGTCCCTCATCCACTGCCCAACAGATTTTACTTGCTCAGTCGTATCGTCTGTTCTCAATTCTTTTCGGTTCATTGTGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTAGGTTTTCAGTCCTCGTCTACTTGACATGTCAAAATCATCAATCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACGTTATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCCCTGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCTGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
'Trichoderma yunnanense CBS_121219'     TCTGGCTGCCTTGTTTGGCTTTTAGTGGGGTGTCAATTTGGCAGCAACCCCGCTATCGCCACTGCACCTCTTCTATCACCCACCACATGCTATTTGCTCAATCGCATCGTCTATTGTCAATCTATTTTTGTTCATTATGCTGATCATGCTTCAATCAATAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTATGCGTGGGTTCTTGACAAGCTCAAGGCCGAGCGTGAGCGTGGTATCACCATCGACATTGCCCTCTGGAAGTTCGAGACTCCCAAGTACTATGTCACCGTCATTGGTATGTTTTAGGCTCTTCTCCAGTCGACATCGCAAGTCCGCCATTCTAACGCCCCGGGTGCGTCGCAGCCCCGGAACCAGGCGCCCGCCGGAGGAACCAACCAAACTCTTTCTGTAGTCCCCTCGCGGACG-TATTTCTTACAGCTCTGAGCAAAAATTCAAAATGAATCAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCGCCAGTATTCTGGCGGGCATGCCTGTCCGAGCGTCATTTCAACCCTCGAACCCCTCCGGGGGATCGGCGTTGGGGATCGGGACCCCTCACACGGGTGCCGGCCCCGAAATACAGTGGCGGTCTCGCCGCAGCCTCTCCTGCGCAGTAGTTTGCACAACTCGCACCGGGAGCGCGGCGCGTCCACGTCCGTAAAACACCCA
;
END;

[ The following blocks are output data for analysis step 18638 ]
BEGIN TREES;
      TITLE 'Trichoderma hamatum clade (New sp)  fig. 3';
      LINK TAXA = TaxaForAnalysisStep18638;
      TREE Fig._3 = [&R] ('Trichoderma strigosum DAOM_166121':0.079781,((('Trichoderma asperelloides GJS_996':0.0,'Trichoderma asperelloides GJS_04116':0.0):0.035535,('Trichoderma yunnanense CBS_121219':0.012631,('Trichoderma asperellum GJS_01294':0.0,'Trichoderma asperellum GJS_91162':0.0):0.033159):0.01623):0.044116,(('Hypocrea neorufa GJS_96132':0.0,'Hypocrea neorufa GJS_96135':0.002807):0.157372,((('Trichoderma paucisporum GJS_0113':0.0,'Trichoderma paucisporum GJS_0369':0.0):0.01831,('Trichoderma theobromicola Dis_85f':0.002632,'Trichoderma theobromicola Dis_376f':0.0):0.014872):0.038184,(('Trichoderma lickfeldtiae GJS_04196':0.002651,'Trichoderma lieckfeldtiae GJS_0501':0.005309):0.045539,(('Trichoderma restrictum PPRI_19367':0.190344,('Hypocrea pezizoides GJS_01257':0.030524,('Trichoderma eijii TUFC_100002':0.0,Trichoderma_eijii_8139:0.002869):0.013397):0.099102):0.0,(('Trichoderma evansii Dis_380a':0.0,'Trichoderma evansii DIS_341HI':0.0):0.036152,(('Trichoderma pubescens DAOM_166162':0.0,'Trichoderma pubescens DAOM_229987':0.002889):0.051429,('Hypocrea flaviconidia GJS_9949':0.076304,('Trichoderma hamatum DAOM_167057':0.019185,'Trichoderma hamatum GJS_04203':0.016949):0.049205):0.008021):0.014795):0.011714):0.025767):0.009209):3.0E-6):0.007832):0.079781);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97016]


END;