#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 19, 2025; 8:17 GMT TreeBASE (cc) 1994-2008 Study reference: Wang C., Moeller M., & Cronk Q. 2003. Phylogenetic position of Titanotrichum oldhamii (Gesneriaceae) inferred from four different genes. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1066] [ The following blocks are input data for analysis step 1874 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1874; DIMENSIONS NTAX=36; TAXLABELS Antirrhinum_majus_cyc Antirrhinum_majus_dich Besleria_labiosa_Gcyc1 Calceolaria_arachnoidea_Ccyc1 Calceolaria_arachnoidea_Ccyc2 Chrysothemis_pulchella_Gcyc1 Cyrtandra_apiculata_Gcyc1 Cyrtandra_apiculata_Gcyc2 Didymocarpus_citrinus_Gcyc1C Didymocarpus_citrinus_Gcyc1D Epithema_benthamii_Gcyc1 Epithema_benthamii_Gcyc2 Fieldia_australis_Gcyc1E Fieldia_australis_Gcyc1F Gesneria_humilis_Gcyc1 Jovellana_punctata_Ccyc2 Kohleria_eriantha_Gcyc1 Loxostigma_sp._Gcyc1C Loxostigma_sp._Gcyc1D Mitraria_coccinea_Gcyc1E Napeanthus_reitzii_Gcyc1 Nicotiana_tabacum_cyc1 Nicotiana_tabacum_cyc2 Paulownia_tomentosa_Pcyc1 Paulownia_tomentosa_Pcyc2 Ramonda_myconi_Gcyc1 Ramonda_myconi_Gcyc2 Schizanthus_x_wisetonensis_cyc1 Schizanthus_x_wisetonensis_cyc2 Scrophularia_canina_Scyc1 Scrophularia_canina_Scyc2 Sinningia_schiffneri_Gcyc1 Streptocarpus_holstii_Gcyc1A Streptocarpus_holstii_Gcyc1B Tetranema__mexicanum_Tcyc2 Titanotrichum_oldhamii_Gcyc1 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M689] TITLE 'CYC_Table 2,3'; LINK TAXA = TaxaForAnalysisStep1874; DIMENSIONS NCHAR=1020; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .] Antirrhinum_majus_cyc ATGCTAGGTTTCGACAAGCCGAGCAAAACCCTTGATTGGCTGCTCACTAAGTCGAAAACCGCTATCAAAGAGCTT---------GTGCAGTCTAAA------------------------AGTACT---------AAGAGCAAC---------TCTTCCTCCCCTTGTGAT---GATTGTGAG---GAAGTTGTGTCTGTA---------------GAT------TCTGAGAATGTGACA------------GAT---CATTCAAAGGGGAAA---TCACTG------AAGGCT---------------------AACAACAAATGTAAAGAA---GCAATGGATTCACATCAAGCAGCA---------GCCAAAGAGTCGAGGGCGAAGGCGAGAGCGAGAGCTAGGGAAAGAACTAAGGAGAAGATGTGTATCAAACAACTGAATGAAGCTATA------------------------------------------GTACTG---------------AGGAACCAT---CAATTTGAAGTT------------TCGGGTACCCGT------------------------------------------------------------------------------GAG------------------GCG---------------------------------TTTGTT------------------------------CATCCA------GTTTTCGGGTTTCATCAGCAAAAC---------------------------------TATGGC---AACGCATCTCAT---------------------------------------------------------GAGAACTGGGAT---CAGAGTAACCTTTCT---------------------------------------------------TCGCAGTCGAACCAGCTATGCGCCATTTTG------AATCAGCACAAGTTCATA Antirrhinum_majus_dich ATGCTAGGTTTTGACAAGCCTAGCAAAACCCTTGATTGGCTGCTCACGAAGTCGAAGGAAGCTATTAAGGAGCTC---------GTGCAGTCGAAA------------------------AGCTCG---------AAAAGTAAT------ATTTCTAATTCTCCTTCT------GAATGTGATCAAGAGGTTTTGTCTGCG---------------GACTTGCCT---------------TATATT---------GGATCATCAAAAGGAAAAGCTGCAGTAGGGCTAAATTCT------------------------AACAAATGTAAAGGG---GGAAGGGAC------------GCGGTGGATCTTGCGAAGGAGTCGAGGGCGAAGGCGAGAGCGAGGGCTAGGGAAAGAACTAAGGAGAAAATGTGCATCAAACAGCTTAATCAAGAA---AGAAAC---AAGAGC---TATGAG---TGG---AACCCCTCAGTTCTA---TTTCAGTCAAAG---AGTAGTCAACAATTTGAAGTT------------TCAGGTCCCTCA---------------------------------------------------------------------ACTAAT---------------------------------TATGAAGAACTAAATCAA---GAATCCATCATGATCAAGAGGAAGTTGAAG------CAGAACCACCCT---TCAATGTTTGGGTTT---CAACCTGAA------------------------------------------------------------------------------------------------------AATGCCACTGAGAATTGGGATTATTACAGTAACTTTACC---------------------------------------------------TCACAGTCCAACCAGCTATGTGCCATTTTG------GATCAGCATAAGTTCATA Besleria_labiosa_Gcyc1 ATGCTAGGTTTTGACAAGCCAAGCAAAACCCTTGAGTGGGTGCTAAAGAAATCAAAGGCCGGGATTAAAGAATTG---------GTGCAGACAAAAGAAAATAGTGGGAATGCTAATGCCAGTGCTAGTGCTGCTAAGAGC------------ATTTCTTCGCCTTCT------GAGTGT------GAGGTGGTGTCTGCAGGA---AATTACGGCGAAGCCCCTTACGAAAACGGGAGCTACGTGGCGTGTGCTGCGGATTCAAGGAAGAAA---------------------------------------------------------------------GATCCACAGAAGAATGTGTTGAATCTTGCTAAAATGTCGAGAGCCAAGGCGAGGGCGAGGGCGAGGGAAAGAACGAGAGAGAAAATGTGCATAAAGAAGTTTAATGAATCA---AGGAACAATATGTGTGGCCCTGATCATTTGATCAACCCTTCAAGCTCATCAATTCATTCA---AGAAAC---GATATGTTTGAAGTTTGT------CCCATG---AGTAAT------------------------------------------------------------------------------GTGGCATCTTCTGCTGCAGCAGCTCCAAAT---GAAGACCTAATTCAA---GAATCCATTGTCATCAAAAGGATGTTGAAG------------CACCCGTCTTCGTTCTTCGGATTT---CAACAAAACCTT---ATTATTTCAAGAGATTTG------AACTGCACT---CTCCCATCTCCT------------------------------------------------AATGTGAGTGACAATTGGGAT---ATTAGTAGCTTTAAC---------------------------------------------------TCACAGTCAAAT---CTATGTGACATTTTG------GATCAGCACAAATTCATA Calceolaria_arachnoidea_Ccyc1 ATGCTAGGTTTCGACAAGCCGAGTAAAACTCTCGAGTGGCTATTGACCAAGTCAAAATCCGCCATTAAGGAG------------------ACGAAA---GAG---------------------------------AAGTGT---------ACTTCTTCCTCACCGTCT------GAATGT------------GTTTCTGCAGGT---AAC---GGTGAA---------------------TTTTTA------------GATTCAAAGGGAAAA---TCT------------------------------------------------AAAGGATCTGGAAAAGAG------------GCGTTGAATCTCGCAAAAGAGTCGAGGGACAAGGAGAGAGCGAGAGCTAGGGAAAGAACGAGGGAGAAAATGAACTTAAAAAAGCTCGACGAATCG---------------------------------------------------------------------AAC---CAAGTTTTTGAT---------------------------------------------------------------------------------CACTTTCCATCG---AGTAGT---------------------------ACTGCT---GAAGATCTTATTCGA---GAATCGATTCTCGTAAAGAGGATGATGAGA------------CACCCT---TCGATTTTCGGGTTC---CAGCAAAACGAT---ACCGTTTCAAGACAT------TCAAATTTTAATAATTTTCAATCTCAT------------------------------------------------AATGTGAATGAGAATTGGGAT---TTGAGCAACTTGAAC---------------------------------------------------TCACAATCCAAC---TTATCGGACATTTTG------GATCAGCACAAATTCATA Calceolaria_arachnoidea_Ccyc2 ATGCTAGGTTTCGACAAGCCGAGCAAAACCCTCGATTGGCTACTCACGAAATCGAAAGCTGCCATTAAAGAGCTG---------GTGCAGAACAAG---CAA---------------------GGAACTGAT---AAGAAC---------------------ATTTAT------GAATGTGAC---GAGGTT---------------------------------ATAGAAAATGGGAAC------------------ATATCGAAGAGGAAA---TCT------------------------------------------AAATGTAAGGGAGTAGTAAAAGATCCC---------GCGTTGAATAGTGTGAAAGAATCGAGGGATAAGGCGAGAGCGAGGGCTAGGGAAAGAACAAGAGAGAAAGTAAATGCGAAAAAAATCGATGAGTGC---AGAAATAATATGTGTTCTTCTGAT---TTG------------------------------------AAC---AATATGTTC---------------------AGTAGCAAT---------------------------------------------------------TTTTCGTTA---CCTAAT---GAA---------------GCTGTGGTAACT---GAAGATTTTACTCAA---GAATCGATTCTCATCAAGAGGATGATGAAA------------AACCCT---TCGATTTTTGGGTTT---CAGCAAAACATC---GGCGGT------------------------AGT---TTTCCGTGTCCTAAT---------------------------------------------AATGTCGGCGAGAACTGGGAT---ATGAGTAGCTTAAAC---------------------------------------------------TCACAAACCAAT---TTGTGTGACATTTTG------GATCAGCACAAATTCATA Chrysothemis_pulchella_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGACTGGTTACTCACTAAATCTAAAGCAGCCATTAAGGAGCTG---------GTGCAGGCTAAG---AAAAGT------------GGGAGTGGGAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTAGTGTCTGCAGGA---AAT---GGTGAAACT---TTCGAAAATGGCAGCTATTTG------GATGCTGATTCAAAGAAGAAA---TCACTGCCCGTGAATCCT---------------------AACTACAAGTGTAAAGAATATTCAAAAGATCCACAGCAGTCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAGGCAAGGGCAAGGGCCAGAGAAAGAACAAGAGAGAAAATGTGCATCAAGAAGCTTAATGAATCA---AGAAGC---ATGGAT---CCTGAT---TTG---AACCCTTCAAACCAA---ATTCAG---------------------------------------------------------------------------------------------------CCTACCCTCCACTGTCCCTTA---ACTAATAATGTA------------CCTGCTGCGACGACT---GAAGATTTAATTCAA---GAATCTATTGTCATTAAAAGGATGTTGAAA---------CAGTACCCT---CCATTTTTTGGATTT---CAACAAAACCTT---ATCATTTCAAGGGATTTG------AACTGCCAT---CTCCCTTCTCCT------------------------------------------------AATATCAACGACAATTGGGAT---ATCAATAGCTTAACC---------------------------------------------------TCACAATCCAAC---CTGTGTGACATTTTG------GATCAGCACAAATTCATA Cyrtandra_apiculata_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACACTTGAGTGGTTGTTAACGAAATCGAAAGTAGCCATTAAAGATCTG---------GTTCACACAAAG---AAAAGT------------------TCTAGTGCT---AGGAGC------------ACTTCTTCCCCTTCT------GAATGC------GGAGTAGTGTTA---------AAT---GGTGAAGCT---TTTGAAAATGGGAGTTGTTTATTA---GGTGCAGATTTGAAAAGAAAA---TCGGTATCGATGAATGCT------------------------AACAAATGTAAAGGA---GCTAAAGATCCAACACAGAGTGCATCAACTCTAGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACCAAGGAGAAAATGTGCATCAAGAAGCAAAATGAATCA---AGAAAC---ATGTGT---TCTAAT---TTA---AATCCTTCCGTCCCA---ATTCAG------AGAAAC---AATTTGTTTGAAGTTTGCAGA---CCCTTTGCATCTAAT---------------------------------------------AGTATTCTTCATTGTCCCATA---ACTAAT---GAAGCAACTGCCTCTACAGTAGCAGCAACTCATGAAGACCTAATTCAA---GAATCCAATGTCATTAAAAGGATGCTGAGG---------CACCACTCT---TCGTTTTTCGGGTTC------------------------------------------CATTGCAGT---CTCCCATCTCCT------------------------------------------------AATGTTAATGAGAATTGGGAT---GTTAGCAGCTTAACC---------------------------------------------------TCACAATCCAAC---TTTTGTGACATTTTG------GATCAGCACAAATTCATA Cyrtandra_apiculata_Gcyc2 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGAATGGCTGCTTACAAAATCAAAAACAGCAATTAAGGAGCTG---------GTGCAGATAAAG---AAAAGT---------GATGCCCCTACTTGCACTAATAAGAGA------------ATTTCGTCCCCTTCA------GGGTGC------GAGGTA---------------ATA---GAG---------TTGGAAAATGGGAACTACTTA------GACGCGGATTATAATGGGAAC---TTGGTCCCGGCCAATACT------------------------TACAGATGTAGAAGA---GCAAAAGATGCACAGCAGGATGTATGGAACCTTGCCAAAGACTCGAGGGCTAAGGCAAGAACAAGGGCTAGGGAAAGAACGAGAGAAAAAATGTGCATGAAGAAGCTTACTGAATCA---AGCAAC---ATGGCT---TCTGAC---TTG---AACCTTTCAATCCCA---AGTCAGGCT---AGAAAA---AGTTTCTCAGAAGTTTGCAAAGTACCCCCT---TCTAAT---------------------------------------ACTGAGCCTAGGCTCCATTTTCCCTTA---ACCAAT------------------ACAGCTGCTGCAACT---GAAGACCTAATTCAA---GAATCCCTTGTCATCAGAAGGATGTTGAAG------------CACAAT---TCGATGCTCGGGTTT---CAGCAAAAC---------------------------------------------------------------------------------------------------------GTAAATCAAAATTGGGAT---ATTAGCAGCTTAACA---------------------------------------------------GCACGATCCAAC---CTATGTGACATTTTG------GATCAGCACAAATTCATA Didymocarpus_citrinus_Gcyc1C ATGCTAGGTTTCGACAAGCCAAGTAAAACACTTGACTGGTTATTAACGAAATCGAAGGTAGCCATTAAAGATCTG---------CTTCATACAAAG---AAAAGT------------------TCTAGTGCT---AGGAGC------------ACTTCTTCGCCTTCT------GAATGC---------GTAGGGTTA---------AAT---GGTAAAGAT---TTTGAATATGGGAGTCGTTTATTA---CCTGCGGATTCAAAGAGAAAA---TCTGAGTTGATGAATGCG------------------------AACAAATGTAAAGGA---GCTAAAGATCCAACACAGAGTGCATCAACTCTATCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACGAAGGAGAAAATGTGCATCAAGAAGCTAAATGAATCA---AGAAAC---CTG------------------------------------------------------AAC---AGTTTGTTCGAAGTTCATAGA---CCATCTTCATCTAAC---------------------------------------AGCCAGCCTATTCTTCATTGTCCCATA---TCCAAT---GAAGCTACTGCTGCCACAGTGGCAGCAACT---GAACACCTAATTCAA---GAATCCAATGTCGTTAAAAGGATGTTGAGGCACCATTATTATCACCCT---TCTTTTTTCGGGTTT------------------------------------------CATTGCAGT---TTCCCATCTCCA------------------------------------------------------AATGAGAATTGGGAT---GTTAGCAGTTTAACC---------------------------------------------------TCGCAAACCAAC---TTTTGTGACATTTTG------GATCAGCACAAATTCATA Didymocarpus_citrinus_Gcyc1D ATGCTAGGTTTCGACAAGCCAAGTAAAACACTTGAGTGGTTGTTAACGAAATCGAAAGTAGCCATTAAAGATCTG---------GTTCACGCAAAG---AAAAGT------------------TCTAGTGCT---AGGGGC------------ACTTCTTCCCCTTCT------GAATGC------GAAGTAGTGTTA---------AAT---GGTGAAGCT---TTTGAAAATGGGACTTGTTTAGTA---GGTGCAGATTCGAAGAGAAAA---TGGGTATCGATTAACGCT------------------------AACAAATGTAAAGGA---GCTAAAGATCCGTCACAGAGTGCATCAACTCTAGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACCAAGGAGAAAATGTGCATCAAGCAGCTAAATGAATCA---AGAAAC---ATGGGT---TCTATT---TTA---AATCCTTCAGTTCCG---ATTCAG------AGGAAC---AATTTGTTTGAAGTGTGCAGA---CCATCAGCATCTAAT---------------------------------------------AGTATTCTTCTTTGTCCCATA---ACTAGT---GAAGCAACTACTGCTACAGTAGCAGCAACTCATGAAGACCTAATTCAA---GACTCCAATGTCATTAAAAGGATGCTGAGG---------CACCACTCT---TCGTTTTTCGGGTTC------------------------------------------CATTGCAGC---CTTCCAGCTCCT------------------------------------------------AATGTCAATGAGGATTGGAAT---GTTAGCAGCTTAACC---------------------------------------------------TCACAATCCAAC---TTTTGTGACATTTTG------GATCAGCACAAATTCATA Epithema_benthamii_Gcyc1 ATGCTAGGTTTCGACAAGCCTAGCAAAACCCTTGAGTGGCTTCTAACAAAGTCCAAAGCAGCAATCAAGGATCTT---------GTGCTCTCCAAA---AAATGT------------GCAAGTTCTAGTGCT---AAGAGC------------ACTTCCTCCCCTTCT------GAA------------GTGGTG------------AAT---GGGGAGGAT---TTTGAGACTGGGAATTCTTTAGTG------GCCGATTCGAAGAGGAAG---TTGGTGGTTACG---------------------------------AGATGTAGAGGA---GGTAAAGATCCGCAACTAGCTGTGCCAAATCATGAAAAAGAGTCGAGGGCAAAGGCCAGAGCGAGGGCCATGGAAAGGACCAAGGAGAAAATGTGCATGAAGAAGCTCAATGAAACA---AGAAAC---TTGGGG---CCTGAT---GTG---AACCCTGCAATGCCA---ATGCAG---------------------------------------------------------------------------------------------------CCAATTTTCCAGTGTCCCTTG---ACAAAT---GAA------------GCTGCATCCAAC------GAAGACCTAATTCAA---GAATCTTTCACCGTTAGGAGAATGTCGAAG---------CATCAGCCG------TTTTTCGGGTTT---CAACAA---------------------------------------------------------------------------------------------------------------AATGAGAACTGGGAT---ATAACCAGTTTACCC---------------------------------------------------TCACAATCCAAT---CTTTGTGACATTTTG------GATCAGCACAAATTCATA Epithema_benthamii_Gcyc2 ATGCTAGGTTTCGACAAGCCAAGTAAAACACTCGAGTGGCTGCTCACGAAATCAAAAGCAGCCATTAATGAGCTC---------GTGCAGATGAAA---AAAAGT---------ACTACTAGTACTAGTACT------AGT---------------------GCTCGT------GAATGC------CAGGCACCATCAACAGGA---AATGATACTCAAGCT---TTAGAAAACGGA---------------------------------------------------------------------------------AACAAATGTAAGAGG---GGGAAAGATTTACCA---------TTGAATGTTGCTAAAGAATCAAGGGTTAAAGCAAGAGCAAGGGCTAGAGAAAGAACACAGGAGAAAATGTGCATAAAAAAGCTTAATGAATCG---AGAAAC---TTG---TCTTCGGGT---CTC---CACTCTTCAGACCCA---ATTCAGTCA---AGAAAT------------------------------------------------------------------------------------------------------CACTTG---AACAAT---ATA------------TCGGCTGCATCAAGT---GATGATCTAATTCAA---GAATCAGTTCTCATCAAAAGGATGTTGAAG------------GACCCT---TCATTTTTCGGGTTC---CAAGAAAACCTT---ATCATTTCCAGAGATTTG------AGTTACAGT---ATCCCTTACGAT------------------------------------------------AGTGCCAATGAGAATTGGGAT---ATCAGTACCTTAAGC---------------------------------------------------GAACAATCCAAC------------ATTTTG------GATCAGCACAAATTCATA Fieldia_australis_Gcyc1E ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGAGTGGCTGCTCACGAAATCGAAAGCAGCCATTAAGGAGCTG---------ATGCAGACGAAG---AAAAGA------------GCCAGTGCTAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTCGTGTCTGCAGGA---AAT---GGTGAAGCT---TTCGAAAATGGGAACTATTTA------GATGCAGATTCAAAGAGGAAA---TCGGTACTGCTGAATGCT------------------------TACAAATGTAAAGAA---GCAAAAGATCCACAGCAGGCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAAGCAAGAGCAAGGGCTAGAGAAAGAACAAGAGAGAAAATGTGCATCAAAAAGCTTAACGAATCA---AGAAAC---TTGGAT---CCTGAT---TTG---AACCCCTCAAACCCA---ATTCAGTTC---AGAAAC---AATCTATTCGAAATTTGCAAATTA---TCTGCTTCTAAT---------------------------------------AGCGAGCCTATCCTTCATTGTCCCTTA---ACTAAT---GTA------------GCTGCTGCAGCAACT---GAAGACCTAATTCAA---GAATCCATTGTCATCAAAAGGATGCTGAAG------------CACCCT---TCATTTTTTGGATTT---CAACAAAACCTT---ATCATTTCAAGAGATTTG------AACTGCAGT---CTCCCATCTCCT------------------------------------------------AATATCAATGATAATTGGGAT---ATCAGTAGCTTAACC---------------------------------------------------TCACAATCCAAC---CTATGTGACATTTTG------GATCAGCACAAATTCATA Fieldia_australis_Gcyc1F ATGCTAGGTTTCGACAAGCCAAGTAAGACCCTTGAGTGGCTGCTCACGAAATCGAAATCAGCCATTAAGGAGCTG---------GTTCAGACAAAG---AAAAGT------------GGCAGTGCTAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATCC------GAGGTAGTGTCTGCAGGA---AAT---GGTGAAGCT---TTCGAAAATGGGAACTATGTT------GGTGCAGAT---------------GACCGTCCGTTAAACTACCAAAAAAACTTCAAGTTGAATGCTTACAATTGTAAAGAA---GCAAAAGATCCACAGCAGGCTGCAATTAATCTAGCCAAAGTTTCAAGGTCTAAAGCAAGAGCAAGGGCTAGAGAAAGAACAAGAGAGAAAATGTGCATCAAGAATCTTAACGAATCG---AGAAAC---ATGGAT---CTTGAT---TTG---AACCCCTCA---ACA---ATTCAGTCT---AGAAAC---AATCTATTTGAAGTTTGCAAATTA---TCTGCTTCTAAC---------------------------------------ATCCAGCCTCTTCTCCATTGTCCCTTA---ACTAAT---GAA------------ACTGCTGCCGCAACT---GAAGACCTAATTCAA---GAATCCATTGTCATCAAAAGGATGTTGAAG------------CATCCT---TCGTTTTTTGGATTT---CAACAAAACCTT---ACCATTTCAAGAGATTTG------AACTGCAGT---CTCCCATCTCCT------------------------------------------------AATATCAATGATAATTGGGAT---ATTAATAGCTTAACC---------------------------------------------------TCACAATCCAAC---ATATGTGACATTTTG------GATCAGCACAAATTCATA Gesneria_humilis_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGACTGGTTGCTCTCTAAATCTAAAGCAGCCATTAAGGAGCTG---------GTGCAGGCTAAG---AAAAGT------------GGGAGTGGTAGTGCT---AAGTGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTAGTGTCTGCAGGA---ACT---GGTGAAACT---TTCGAAAATGTCAGCTATTTG------GATGCGGATTCAAAGAAGAAA---TCACTGTCCCTGAATCCT---------------------ATTTACAAGTGTAAAGAATATTCAAAAGATCCACAGCAGTCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAGGCAAGAGCAAGGGCCAGAGAAAGAACAAGAGAGAAAATGTGCATCAAGAAGCTTAATGAATCA---AGAAAC---ATGGAC---CCTGAT---TTG---AACCCTTCAAACCAA---ATTCAG---------------------------------------------------------------------------------------------------CCTACCCTCCACTGTCCCTTA---ACTAATAGTGTA------------CCTGCTGCAACAACT---GAAGATTTAATTCAA---GAATCCATTGTCATTAAAAGGATGTTGAAA---------CAGTATCCT---TCATTTTTTGGATTT---CAACAAAACCTT---ATCATGTCAAGGGATTTG------AACTGCAAT---CTCCCTTCACCT------------------------------------------------AATATCAACGATAATTGGGAT---ATCAATAGCTTAACC---------------------------------------------------TCACAGTCCAAC---CTGTGTGACATTTTG------GATCAGCACAAATTCATA Jovellana_punctata_Ccyc2 ATGCTAGGTTTCGACAAGCCAAGTAAGACCTTGGAGTGGCTACTCACGACATCGAAAGCAGACATTAAAGAGCTG---------GTGCAGACCAAG---CAA---------------------AGTACTGCT---AAGAAC---------------------ATTTCT------GAATGT------GAAGCTGTGTCA---------AAT---GGAGAAGTT---CTTGAAAATGGGAACTGTGTATGG------GCAGATTTGAAGAGGAAA---TCT------------------------------------------AAATGTATAGGA---GTAAATGATCCC---------GCATTAAATCTTGCGAAAGAATCGAGGGATAAAGCTAGAGCAAGGGCTAGGGAAAGAACAAGAGAGAAAGTAAACGCGAAAAAACTCGACGAATGC---AGAAGAAATATGGGTTCTTCTGAT---TTG------------------------------------AAC---AATCTGTTT---------------------------AATACC---------------------------------------------------CATTTTCCGTTA---CCTAAT---GAA---------------GCTGCAGCAACT---GAAGATTTTACTCAA---GAATCCGTTCTCATCAAAAGGATGATGAAA------------CTCCCT---TCTATTTTCGGGTTT---CAGCAGAACCTT---AGCAGT------------------------AGT---TTCCCATGTTCT------------------------------------------------AATGTGGGTGAGAATTGGGAT---ATTAGTAACTTAAAC---------------------------------------------------TCACAATCCAAT---CGGTGTGACATTTTG------GATCAGCACAAATTCATA Kohleria_eriantha_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGACTGGTTGCTCACTAAATCTAAAGCAGCCATTAAGGAGCTG---------GTGCAGGCTAAG---AAAAGT------------GGGAGTGGTAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGT------GAGGTAGTGTCTGCAGGA---ACT---GGTGAAACT---TTCGAAAATGGCAGCTATTTG------GATGCGGATTCAAAGAAGAAA---TCACTGCCCCTGAATTCT---------------------AATTACAACTGTAAAGAATATTCAAAAGATCCACAGCAGTCTGCATTAAATCTTGCTAAAGTATCAAGGGCCAAGGCAAGAGCAAGGGCCAGAGAAAGAACAAGAGAGAAAATGAGCATCAAGAAGCTTAATGAATCA---AGAAAC---ATGAAC---CCTGAT---TTG---AACCCTTCAAACCAA---ATTCAG---------------------------------------------------------------------------------------------------CCTACCCTCCACTGTCCCTTA---ACTAATAGTGTA------------CCTGCTGCAACAAAT---GAAGATTTAATTCAA---GAATCCATTGTCATTAAAAGGATGTTGAAA---------CAGTACCCG---TCATTTTTTGGATTT---CAACAAAACCTT---ATCATTTCAAGGGATTTG------AACTGCAAT---CTCCCTTCACCT------------------------------------------------AATATCAACTATAATTGGGAT---GTCAATAGCTTAACT---------------------------------------------------TCACAGTCCAAC---CTGTGTGACATTTTG------GATCAGCACAAATTCATA Loxostigma_sp._Gcyc1C ATGCTAGGTTTCGACAAGCCAAGTAAAACACTTGAGTGGTTGTTAACGAAATCGAAAGCAGCCATTAAAGATCTG---------GTTCATACAAAG---AAGAGT------------------TCTAGTTCT---AGGAGC------------ACTTCTTCGCCTTCT------GAATGC------GAAGTAGTGTTA---------AAT---CGTGAAGCT---TTTGAATTTGGGAGTTGTTTATTA---CCTGCGGATTCGAAGAGAAAA---TCAGTGTTGATGAATGCT------------------------AACAAATGTAAAGGA---GCTAAAGATCCAACACAGAGTGCATCAACTCTGGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCAAGGGAAAGAACGAAGGAAAAAATGGGCATCAAGAAGCTAAATGAATCA---AGAAAC---ATG------------------------------------------------------AAC---AATTTGTTTGAAGTTTGCAGA---CCATCTGCATCTAAT---------------------------------------ATCCAGCCTATTCTTCATTGTCCCATT---ACCAAT---GAAGCTACTGCTGACACAGTAGTAGCAACT---AAACACCTAATTCAA---GAATCCAATGTCGTTAAAAGGATGCTGAGG---------CACCACCCT---TCGTTTTTCGGGTTT------------------------------------------CATTGCAGT---CTCCCATCAACT------------------------------------------------AATGTCAATGATAATTGGGAT---GTCAGCAGTTTAACC---------------------------------------------------TCACAATCCAAC---TTTTGTGACATTTTG------GATCAGCACAAATTCATA Loxostigma_sp._Gcyc1D ATGCTAGGTTTCGACAAGCCAAGTAAAACACTTGAGTGGTTGTTAACGAAATCGAAAGTAGCCATTAAAGATCTG---------GTTCACACAAAG---AAAAGT------------------TCTAGTGCT---AGGAGC------------ACTTCTTCCCCTTCT------GAATGC------GAAGTAGTGTTA---------AAT---GATGAGGCT---TTTGAAAATGGGAGTTATTTATTA---GGTGCAGATTCGAAGAGAAAA---TGGGTATCGATGAATGCT------------------------AACAAATGTAAAGGA---GCTAAAGATCCAACTCAGAGTGCATCAACTCTAGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACCAAGGAGAAAATGTGCATCAAGAAGCTAAATGAATCA---AGAAAC---ATGGGT---TCTAAT---TTA---AATCCTTCAGTCCCA---ATTCAG------AGGAAC---AATTTGTTTGAAGTTTGCAGA---CCATCTGCATCTAAT---------------------------------------------AGTTTTCTTCATTGTTCCATA---ACTAAT---GAAGCAACTGCTGCTACAGTAGCAGCAACTCATGAAGACCTAATTCAA---GAATCCAATGTCATTAAAAGGATGCTGAGG---------CACCACTCT---TCGTTTTTCGGGTTA------------------------------------------TATTGCAGT---CTCCCATCTCCT------------------------------------------------AATGTCAATGAGAATTGGGAT---GCTAGCAGCTTAACC---------------------------------------------------TCACAATCCAAC---TTTTGTGACATTTTG------GATCAGCACAAATTCATA Mitraria_coccinea_Gcyc1E ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGAGTGGCTGCTCACGAAATCGAAAGCAGCCATTAAGGAGCTG---------GTGCAGACGAAG---AAAAGT------------GCCAGTGCTAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTCGTGTCTGCAGGA---AAT---GGTGAAGCT---TTCGAAAATGGGAACTATTTA------GGTGCAGATTCAAACAGGAAA---TCGGTACTGCTGAATGCT------------------------TACAAATGTAAAGAA---GCAAAAGATCCACAGCAGCCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAAGCAAGAGCAAGGGCTAGAGAAGGAACAAGAGAGAAAATGTGCATCAAGAAGCTTAACGAATCA---AGATAC---ATGGAT---CCTGAT---TCG---AACCCCTCAAACCCA---ATTCAGTCC---AGAAAC---AATCTAATCGAAATTTGCAAATCA---TCTGCTTCTAAT---------------------------------------AGCGAGCCTATCCTCCATTGTCCCTTA---ACTAAT---GTA------------GCTGCTGCATCAACT---GAAGACCTAATTCAA---GAATCCATTGTCATCAAAAGGATGCTGAAG------------CACCCT---TCGTTTTTTGGATAT---CAACAAAACCTT---ATCATTTCAAGAGATTTG------AACTGCAGT---CTCCCATCTCCT------------------------------------------------AATATCAATGATAATTGGGAT---ATCAGTAGCTTAACC---------------------------------------------------TCACAATCCAAC---CTATGTGACATTTTG------GATCAGCACAAATTCATA Napeanthus_reitzii_Gcyc1 ATGCTAGGTTTTGACAAGCCAAGCAAAACCCTTGAATGGCTGCTCACGAAATCGAAAGCAGCCATTAAGGAGCTG---------GTGCACACAAAG---AAAAGT------------GCCAGTGCCAGTGCT---AAGAGC------------AATTCTTCCCCTTCT------GAATGC------GAGGTAGTGTCTGCAGGA---AAT---GGCGAAGCT---TTTGATTATGGAAACTATTTA------GGTGCAGATTCAAAGAAGAAA---TCAGCGCTTATGAATGCT------------------------TACAAATGTAAAGGA---CCAAAAGATCCACAGCAGGCTGCATTAAATCTTGCTAAAGAATCCAGGGCTAAAGCAAGAGCAAGGGCTAGAGAAAGAACAAGAGAAAAAATGAGCATCAAGAAGCTTAACGAATCA---ATAAAC---TTGGTC---CCTGAT---TTG---AACCCCTCAAACCCA---ATTCAGTCT---ACAAAC---AATCCATTTGAC------------------------------------------------------------------------------CTCCATTGTCCCTTA---ACTAAT---GTA------------GCTGCACCAGAAACT---GAAGACCTAATTCAA---GAATCCATAGTCATCAAAAGGATGTTGAAG------------CACCCT---TCATTTTTTGGTTTC---CAACAAAACCTT---ATCATTTCAAGAGATTTG------AACTGCAGC---CTCCCATCTGCT------------------------------------------------AATATCAATGAGAATTGGGAT---ATTAGTAGCATAACC---------------------------------------------------TCACAATCCAAC---CTATGCGACATTTTG------GATCAGCACAAATTCATA Nicotiana_tabacum_cyc1 ATGCTTGGTTTTGACAAACCAAGTAAAACCCTTGATTGGCTATTCACAAAGTCCAAATTAGCCATTGAAGAGCTGACTACT---GCTCAGATCAAA---ATCACCAGC---CCTAATGAGTCGTCAGCAGCAAAGAAAAGTACT---TCATCTATTAAT------------TCAGAATGTGAG---GACGTTGTTCTTGCA------------------------------------------------------------------------------------------------------------------AGAGCAAAACAAGAGGAG------------------GCTATACTTAATTTGGTTGCGAGAGAGTCAAGGGCAAAGGCTAGAGCAAGAGCTAGGGAAAGAACAATCAAGAAAATCTGGGCCCAAATT------GAAGCC---AAACTTAAC------------------------TCATCATCAGTAGTA---------------AAGGAGCAGACTAAGATTGAT------------------------------------------------------------GAAATT---------------------------------------------------------------------AAAGAAATG---ATTCAC---GGATCTGTACTTGTGGAAAGGAAGAATATC---------------------------------------------------------------AAGTCTTCTTCCTCAACTTGGGTTTTCATCACCCGAATCTCAGTGGTACTGAAGAGGCTACAGCTAATTCGAACTACAATAGCTCCTCTTCTACCCGAAATTGGGATC------------------ATGATG------------------------------------------------------------------------TTA---ATCGAACAA------------ Nicotiana_tabacum_cyc2 ATACTAGGTTTTGACAAACCAAGCAAAACGCTGGATTGGCTTTTCACTAACTCGAAACTAGCCATTGAGGAGCTCGCTAATTGGTCAACTCAT------CAGGATCATCACCCAAAG---ATTGCAGGAGCAACGAAGTCGAGCTGCAATGAGACCGCCAAGGATTGTGCTTCACAGTGTGAA---GACCTGGCCATAACA---------------------------ACAAAT---------------------GAGGGTTCGGAAAGAAAG------------------------------------------CCCAAAAGAGCAAAAGAA---AAGAAAGAAGTAAAAGATGATCTTGTCCTAGTTGCAAGAGAGTCAAGGGCGAAGGCAAGAGCAAGAGCTAGGGAAAGAACAATCAAGAAAATGTGGAGTAGAATT------GAAACTAGCCAGAGGTCA------ACTTCTCAG---TTG---ATCAGATCTAGTTTT------------------CACCCAAATTTC------------------------------------------------------------TCTGCTCCTATA------------------------------------------------------------------------------------------GAGTCA------------------------------------------------------------------------TCAACTACCTACTATGGTAGCTCTTCTTTCAAC---------------------------------------------------------------------------ACTGAGAATTTGGAC------AAAGGCACAACT---TCAGAA---CTTCAA------------GGTCGCTGG---------------------AAACAATTG---GACTCATGTCACAGCAACCAA------------ Paulownia_tomentosa_Pcyc1 ATGCTAGGTTTCGACAAGCCAAGCAAAACTCTTGATTGGCTGCTCACCAAATCAAAAACAGCCATTAAGCACCTG---------GTGCAGACGAAG---CAACAC------------ACCACTGCTGGTGCC---AAGAGT------------GTTTCTTCTCCTTCT------GAATGT------GAGGTAGAGTCTGAAGGA---AAT---GGGGAGGCT---TTTGAAAATGGGAAATCTTTA------GGGGCAGATTCAAAAGGAAAA---TCAGTTATGATGAAAGCT------------------------AACAAACATAAAGGA---GGAAAGGATCCACAGCAGGCCGCATTAAATCTTGCAAAAGAGTCGAGGGTAAAGGCAAGAGCAAGGGCTAGGGAAAGAACAAGAGAGAAATTGTGCATCAAGCAGCTCAATGAATCC---AGAAAC---ACGGGC---TATGAT---TTG---AACCCCTCCATCCCA---ATTCAGTAT---ATGAAC---AATCAACTTGAAGTTTGCAAAATA---TCAGGTTCTACTAGC------------------AAGGTGGATGCTGGAATT------------CTCCATTGTCCCCCA---ACTTAT---GAA------------------GCAGCAACTCATGAAGACCTAATTCAA---GAATCCATTGTGATCAAAAGGAAGGTGAAG------------CATCCC---TCAATCTTCGGATTT---CAGCCAAACCAT---ATCATTTCTAGAGATTCGAGTTCAAACTACAGT---ATCCCATCTCCTTAT---------------------------------------------AACTCCACTGAGAATTGGGAT---ATAAGTAACTTTACC---------------------------------------------------TCACAATCCAAC---ATATGTGCCATTTTG------GATCAGCACAAATTCATA Paulownia_tomentosa_Pcyc2 ATGCTAGGTTTCGACAAGCCAAGCAAAACTCTTGATTGGCTGCTTACGAAATCAAAAGCAGCCATTAAAGAGCTG---------GTGCAGACGAAA---CAAAAC------------GCCAGTGCTAGTGCT---AAGAGTAGT------------TCTTCATCCTCT------GAATGT------GAGTTACTCTCTTCTGTAGGAAAT---GGGGATGTT---TTTGAATATGGGAACTCTTTA------GGAGCAGGTTCAAAGAGGAAG---TTT---GGT---------------------------------AACAAACATAAAGGA---GCAAAGGATCCACAGCAGGCAGCATCAAATCTTGCCAAAGAGTCAAGGGCAAAGGCAAGAGCAAGGGCTAGGGAAAGAACAAGAGAGAAAATGTGCATCAAGCAGCTCAATGGAGCC---AGGAAC---ACGGGT---TCTGAT---TTG---AACCCCTCCATCCCA---ATGCAATAT---AGGAAC---AATCAACTTGAAGTTTTTCAGTTATCTGCGGGTTCTAGTAGCAACAACTTATCCTGCTTGAAGGCGAATGCTGGAATTCGTGAGCCTATCTTCCATTGTCCCCTA---ACTAAT---GAA------------------GCAGCTACT---GAAGACCTAATTCAA---GAATCTATTGTGATCAAACGGAAGTCGAAG------------AATCCA---TCATTTTTCGGGTTT---CAGCAAAACCTT---ATTGTTTCGAGAGATTTGAGTTCAAACTACGGT---ATCCCATCTGCT------------------------------------------------AATACCACTGAGAATTGGGAT---ATTTGTAGCTTCACC---------------------------------------------------TCACAATCCAAC---CTGTGCGCCATTTTG------GATCAGCACAAATTCATA Ramonda_myconi_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTCGACTGGTTGTTAACCAAATCGAAAGTGGCCATCAAAGATCTG---------GTGCATACAAAG---AAAAGTTCTAGT------CCTAGTGCTAGTGCT---AGGGGC------------ATTTCTTCCCCTTCC------GAGTGC------GAAGTAGTGTTA---------AAT---GGTGAA---------------------------------------GATTCGAAGAAGAAA---------------------------------------------------AGTAAAGAA---GCAAAGGATCCAACGCAGATTGCATCAACACTAGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACAAAGGAGAAAATGTGCATCAAAAAGTTGAACGAATCA---GGGAAA---ATGGTT---TCTCAT---CTA---AGTCCTACAATC---------------------------------------------------------------------------------------------------------------CCAATT---CATTGCCCAATCATGACTGAT---GAA------------------GCAACTAAT------GACATGATTCAA---GAATCCAATCTCATTAAAAGGATGATGAGG---------CCGCACCCT---TCGATTTTCGGGTTT------------------------------------------CATCGC------------------------------------------------------------------GATGTCAATGAGAATTGGGAT---ATCAGCAGCTTAACA------------------------------------------------TCGTCACAATCCAAC---TTCTGTGACATTTTG------GATCAGCACAAATTCATA Ramonda_myconi_Gcyc2 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGAATGGCTTCTTACAAAATCGAAAGCAGCCATTAAGGAGCTT---------GTGCAGATGAAG---AAAAAT---------GACTCCACTACTTGCACTAATATGAGT---------GTTGTTTCTTCCCCTTCA------GACTGC------GAT---------------------------------------------GGGAACTACATA------GATCCGGATTCTAATGCA------------CCGGCCAATTATTTTGCT------------------TACGGTTGTGGAAGA---ACAAAAGATCCACAGCAGGATGTAATGAACCTTGCCAAAGAATCGAGGGCTAAGGCGAGGGCGAGGGCTAGGGAAAGAACTAGAGAGAAAATGTGCAAGAAGAAGCTTAATGATTCT---AGAAAC---ATGGCCTCTCCTTCTAGCCTC---AATTTTCCCTTAGCT---------------AATAAT---------------------------------------------------------------------------------------------------------------ACAGCT---GCT------------GCTGCTGCTGCAACT---GAAGAACTGATTCAT---GAATCTCTTGTCATCAGAAGGATGTTGAAG------CAAAACCAT------TCAAATTTCGGGTTT---CACCAAAAC---------------------------------------------------------------------------------------------------------TTAAATCAGAATTGGGAT---ATGAGCAACTTAACA---------------------------------------------------GCACAATCCGAA---CTATGTGACATTTTG------GATCAGCACAAATTCATA Schizanthus_x_wisetonensis_cyc1 ATGTTAGGTTTTGACAAACCAAGCAAAACGCTGGATTGGCTCTTCACAAACTCCAAACTAGCCATTGATGATCTC---------------------------------------------ATCACTCGCGCG---AAATCT---------GCTATTTCA---------------CAATGT---CATGAGGAAACCATT------------------------------AATGAAGCAAAC---------------CCTCCTGCCAAAACCAAA------ACAAGTAGTCATGAC---------------------------CACCAAAAACAGGAGGCTAAAACA------------CTTCATGTCCTCGCGAGAGAGTCGAGGGACAAGGCTAGAGCAAGAGCTAGGGAAAGAACAATCAACAAACTGTGGCCTCGA---CTTGTTGGTGGC---AAGAAA---------------------------TCTAACTCATCATTG---------------AAGGAGCATACACAGATGGAT---------------------------------------------------------AAACCAATTTGT------------------------------------------------------------------------------------------------------------------------------GTCAAACCCTCTTTAATCTTGGGTTTTCATGGCCAGAATCTCACTACTGCTCCAAAAGGGTCTATTTCAAACTACAGT---AACTGTTTTTCTAAT---------------------------------------------------ACCCAGAATTGGGAT---GTTAGTAACACTTTGATGAGCTCCAGTTTAAGTGCTGCAATGACTACCAGTGCTAATAATTACTCATCACAA---------GTATTTCAAAGTTGC------GATCAG------------ Schizanthus_x_wisetonensis_cyc2 ATGCTAGGTTTTGAAAAACCCAGCAAAACGCTGGATTGGCTCTTCACAAACTCCAAACTAGCCATTGAAGTTCTC---------------------------------------------TCTGCCAGG------AAAAACCCAGCTTCTTCTATTTCA---------------CAATGTGAGCAAAAGCCTCCTGTG---------------GATCAAATAGCC---AAATCA---------------------------------------------------AGTACTGGT------------------------AAAAAACAAAAACAG---GTCAAGACACATGATCAGGCTACAGTTCTT---GCAAGGGAGTCAAGGGCTAGGGCAAGAGCAAGAGCTAGAGAAAGAACAATCAACAAAATGTGGACCCGAATTGTTACTGGG------AAGAGATCA------------------------------------TTATCATGT------------CCCCAC------ATGGAT------------------------------------------------------ATACAACCACTTTGTGATTAC------------------------------------------------------------AAAAGAGCT---------TGTGATTCA---GCAATTAAAGAAATGATGATC------------AAACCCTGGGTCATTCTTGGGTTT---------------------TCACCCAAATCTCAGTCCTCCAATCATGGGTTTTTCTGCTGCTGCTAC---------------------------------------------ACTACTACT---------------------------------------------------------------------------------------------------------ACATTA------------------------ Scrophularia_canina_Scyc1 ATGCTAGGTTTCGACAAGCCAAGCAGGACTCTTGATTGGCTGCTAACGGAATCGAAACCCGCCATTAAGGAACTCGCT---------------------------------------GCTAGTGGTCGTGGTAATAAGAGTCGC---------ATTTCTTCCCCTTCTGAT---CAATGT------GAAGTGGTCTCAGTC---------------------------GAAAACGCCAGCTCA------GATTCGAAGAGCACTAAAGGGAAA---------------------------------------------------------------------GAGCCACGTCATCAGCTGGCAGATCTTGCTAAAGAGTCAAGGGCAAAGGCAAGGGCAAGGGCTAGCGAAAGAACAAGAGAGAAAATGTGTATCAAGCAGATTAATGGCGCT---ACAAAC---ACCACTCTTCATGAA------------------------------------------CACCAAATTCCATTTAGGGTT---------------AGTAGTAAT---------------------------------------------------------------------------------------------------AGTAGTACT---GGAAATCAT------CATGAG---------------GGGATGGTTAAT---------------------TCGATTTTCGAGTTT---CAGCAAAATCTC---TTTGTTTCTAGAGATTTCACTTCAAACCACAACATGAATCCTACTCAT---------------------------------------------------------GAAAATTGGGAT------------------------------------------------------------------------------------GTTTGTGCCATTTTG------GATCAGCACAAATTCATA Scrophularia_canina_Scyc2 ATGCTAGGTTTCGACAAGCCAAGCAAAACCCTCGATTGGCTACTTACGGAGTCAAAAGCCTCGATTAAAGACCTC---------ATCTTGAAGAAA---AAATCT---------------------------CAAAACGGTGTA------GTTTCATCTTCTCCTTTT------GAATGT------GAGGTAATTTCTTCTAGA---AAC---------------TTAGAA---------------------------CATTCAAACCGAAAA---TCGATATGTTTA------------------------------------------------------------------------------AGTGCTAAAGAGATGAGAGTCAAAGCAAGAGCAAGAGCTAGGGAAAGAACAAGAGAGAAAATGTGTATCAAACAGCTTAATGAAGCTATTAGAAGAAAT---GGA---TATGAT---TTG---AGCCCTTCAATTCCA---ATTCATTATAATATGAATAATAATAAC---------------------------------TGTAATAATGGT---------------------GGAATTTCGGAATCAATCTTCGATTATCCGATC---AATTAT---GAA---------------GCATCATCAAATCATGAAGACCTAATT---CATGAATCCATTTTAATAAGGAGGAAATTTAAG---------CAATATCCTCCATCAATTTTCGGGTTT---CAACACAACCTT---ATATTTTCTCGGGATTCAAGTTCGAAC------------GCTACTCCA------------------------------------------------TTTACTACACAATCC---GAC------------------------------------------------------------------------------------GTTTGGGCCATTTTG------GATCAGCACAAATTCATA Sinningia_schiffneri_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCTTAGACTGGTTGTTAATTAAATCGAAAGCAGCCATTAAGGAGCTG---------GTGCAGGCTAAG---AAAAGT------------GGGAGT------GCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTAGTGTTTGCAGGA---AAT---GGTGAAACT---TTTGAAAATGGCAGCTATTTG------GATGCGGAATCAAAGAAGAAA---TCCATGCCCCTGAATCCT---------------------AATTACAAGTGTAAAGAATATTCAAAAGATCCACAGCAGTCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAGGCAAGAGCAAGGGCCAGAGAAAGAACAAAGGAGAAAATGTGCATCAAGAAGCTTAATGAATCA---AGAAAC---ATGGAT---CCTGAT---TTG---AACCCTTCAAACCAA---ATTCAG---------------------------------------------------------------------------------------------------CCCACCCTCCACTGTCACTTA---ACTAATAATGTA------------TCTGCTGCAACAACT---GAAGATTTAATTCAA---GAATCCATTGTTTTTAAAAGGATGTTGAAA---------CAGTACCCT---TCATTTTTTGGATTT---CAACAAAACCTT---ATCATTTCAAGGGATTTG------AACTGCAAT---CTCCCTTCTCCT------------------------------------------------AATATCAACGATAATTGGGAT---ATCAATAGCTTAACC---------------------------------------------------TCACAATCCAAC---CTGTGTGACATTTTG------GATCAGCACAAATTCATA Streptocarpus_holstii_Gcyc1A ATGCTAGGTTTCGACAAGCCCAGTAAGACACTCGACTGGCTGTTGACGAAATCAAAAGTCGCCATCAAAGATCTG---------GTGCTTAACAAG---ACGAGT------------------TCCAGCTCT---AGAAGC------------ACTTCCTCCCCTTCA------GAATGT------GAAGTAGTATTG---------AAT---GGTGAGGCT---TTTGAAGATGGGAACTGCTTACCA---CACCCGGATTCG---AGAAAA---TCGTCGTCGATGAATGCC------------------------AAAAAATGT------------AAAGATCCAGCACAGAGGGCATCAAAGCTAGCTAAAGAGTCAAGGGCTAAGGCTAGAGCAAGGGCTAGAGAAAGAACAAAGGAGAAAATGTGCATCAAGAAGCTGAATGAATCA---AGAAAC---ATG---------------------------------------------------AACAAC---AATTTTTTT---------------------GCATCTGAT---------------------------------------AGTCACCCTGTTTTTCATTGCCCCATA---ACTAAT---GAAGCTACT---------------GCAACACATGAAGACCTAATTCAA---GAATCCAGTGTCATTAAAAGGATGCTGAGG---------CATCACCAGTCGTCGTTTTTCGGGTTT------------------------------------------CAATTCGGT---TTACCATCTCCT------------------------------------------------TATGTCAATGAGAACTGGGAT---GTTGGCAGCTTAACA---------------------------------------------------TCCCAATCCAAT---TTGTGTGACATTTTG------GATCAGCACAAATTCATA Streptocarpus_holstii_Gcyc1B ATGCTAGGTTTCGACAAGCCGAGTAAGACACTCGACTGGCTGTTGACGAAATCAAAAGTCGCCATCAAAGATCTG---------GTTCTTACCAAT---AAGAGC------------------TCTAGCTCT---AGGAGC------------CCTTCCTCCCCTTCA------GAATGT------GAAGTTGCGTTG---------AAT---GATGAAGCT---TTTCAAGATGGGAGCTGCTTACTA---CCCCCAGATTCCAAGAGGAAT---TCGGCATCGACA------------------------------------------------GCTAGAGATCCAGCACAGAGTGCATCAACTCTAGCTAAAGAATCAAGGGCTAAGGCAAGAGCAAGGGCTAGGGAAAGAACAAAGGAGAAACTGTGCATCAAGAAGCTGAATGAATCC---AGAAAC---ATG---------------------------------------------------AACAAC---AATCTGTTT---------------------ACATCTAAC---------------------------------------AGCCAACCTGTTCTTCACTGCCCCATA---ACTAAT---GAAGCTACT---------------GCAACTCAACAAGACCTAATTCAA---GAATCCAGTGTCATTAAAAGGATGCTGAGG---------CACCACCAG---TCGTTTTTCGGGTTT------------------------------------------CATTGTGCCGCCCTACCGTCTCCT------------------------------------------------GATGTCAATGAGAACTGGGAT---GCTGGCAGCTTAACC---------------------------------------------------TCACAATCCAAC---TTGTGTGACATTTTG------GATCAGCACAAATTCATA Tetranema__mexicanum_Tcyc2 ATGCTAGGTTTCGACAAGCCAAGCAAAACCCTTGATTGGCTGCTCACGAAATCGAAGGCAGCCATTAAGGAGCTG---------GTGCAGTCCAAA------------------------------AGTGCT---AAAAGT---------GCGTCTTCTTCCCCATCT------GAATGTGAG---GAGGTGGTTTCTGCCGGAGGAAAT---GGGGAGGCT---TCTGAGAATGGGAACTATTTG------GGAGCAGATTCAAAAGGGAAA---TCGGTGCTGCTGAGCTCT------------------------AACAAATGCAAAGGA---GCAAAGGATTCACAGCAGGCTGCATTGAATCTTGCGAAAGAGTCGAGGGCAAAGGCAAGAGCAAGGGCCAGAGAAAGAACCAAGGAAAAAATGTGCATCAAGCAGCTCAATGAAGCC---AGAAAC---AAGGGTTCTTCAGAC---TGG---AATCCCTCCATCCTA---ATTCAGTCCAAGCACCATCAT---CAATTTGAAGTT------------TCAGGAAGCCGC------------------------------------------GAGCCGATCCTCCATTACCCCCTA---GCTTAT---GAA------------------GCTGCAACT---GAAGACCTAATTCATCATGAATCCATTATGATCAAGAGGAAGTTGAAG------------CACCCT---TCCATTTCTGCGCTTCATCAACAAAATCTC---AGCGGTTCGAGAAATTTGAATTCAAACTGCAGT---ATCCCTTCTGCT------------------------------------------------AGTGCCACTGAGAATTGGGAT---TATAGTAACTTTATC---------------------------------------------------GCACAGTCCAACCAGCTATGTGCCATTTTG------GATCAGCACAAATTCATA Titanotrichum_oldhamii_Gcyc1 ATGCTAGGTTTCGACAAGCCAAGTAAAACCCTTGAGTGGCTGCTCACGAAATCGAAAGCAGCCATTAAGGAGCTG---------GTGCAGACGAAG---AAAAGTACC------------AGTGCTAGTGCT---AAGAGC------------ATTTCTTCCCCTTCT------GAATGC------GAGGTAGTGTCTGCAGGA---CAT---GGTGAAACT---TTCGAAAATAGGAACTATTTA------GGAGCAGATTCAAAGAAGAAA---TCAGTACTGCTGAATTCT------------------------TACAAATGTAAAGAA---GCAAAAGATCCACAGCAGGCTGCATTAAATCTTGCTAAAGTATCAAGGGCTAAGGCAAGAGCAAGGGCTAGAGAAAGAACAAGAGAGAAAATGTGCATCAAAAAGCTTAACGAATCA---AGAAAC---ATGGGT---CCTGAT---TTG---AACCCA------------ATTCAGTCT---AGAAAC---AATCTATTTGAAGCTTGCAAATTA---TCTGCTTCTAAT---------------------------------------AGCGATCCTATCCTTCATTGTCCCTTA---ACTAAT---GTA------------GCCGCTGCAGCAACT---GAAGACCTAATTCAA---GAATCCATAGTCATCAAAAGGATGTTGAAG------------CACCCT---TCATTTTTTGGGTTT---CAGCAAAACCTT---ATCATTTCAAGAGATTTG------AACTGCAGT---ATCCCATCTCCT------------------------------------------------AACGTCAATGATAATTTCGAT---ATCAGTAGCTTAACC---------------------------------------------------TCACAATCCAAC---CTATGTGACATTTTG------GATCAGCACAAATTCATA ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = 'CYC_Table 2,3') = 1: 1-1018\3, 2: 2-1019\3, 3: 3-1020\3; CODONPOSSET CodonPositions (CHARACTERS = 'CYC_Table 2,3') = 1: 1-1018\3, 2: 2-1019\3, 3: 3-1020\3; END; [ The following blocks are output data for analysis step 1874 ] BEGIN TREES; TITLE Tb6649; LINK TAXA = TaxaForAnalysisStep1874; TREE TITACYC_MP = [&R] (Schizanthus_x_wisetonensis_cyc1,((Schizanthus_x_wisetonensis_cyc2,Nicotiana_tabacum_cyc1),(Nicotiana_tabacum_cyc2,(Scrophularia_canina_Scyc1,(Scrophularia_canina_Scyc2,((Paulownia_tomentosa_Pcyc2,((Antirrhinum_majus_cyc,(Antirrhinum_majus_dich,Tetranema__mexicanum_Tcyc2)),(((Calceolaria_arachnoidea_Ccyc1,Jovellana_punctata_Ccyc2),Calceolaria_arachnoidea_Ccyc2),((Epithema_benthamii_Gcyc2,(Ramonda_myconi_Gcyc2,Cyrtandra_apiculata_Gcyc2)),((Besleria_labiosa_Gcyc1,(Napeanthus_reitzii_Gcyc1,((Titanotrichum_oldhamii_Gcyc1,(Fieldia_australis_Gcyc1E,Mitraria_coccinea_Gcyc1E)),(Fieldia_australis_Gcyc1F,((Chrysothemis_pulchella_Gcyc1,(Kohleria_eriantha_Gcyc1,Gesneria_humilis_Gcyc1)),Sinningia_schiffneri_Gcyc1))))),(Epithema_benthamii_Gcyc1,(Ramonda_myconi_Gcyc1,(((Streptocarpus_holstii_Gcyc1A,Streptocarpus_holstii_Gcyc1B),(Didymocarpus_citrinus_Gcyc1C,Loxostigma_sp._Gcyc1C)),((Didymocarpus_citrinus_Gcyc1D,Loxostigma_sp._Gcyc1D),Cyrtandra_apiculata_Gcyc1))))))))),Paulownia_tomentosa_Pcyc1)))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5834] END;