#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on September 18, 2025; 7:34 GMT TreeBASE (cc) 1994-2008 Study reference: Karaman M., Boskovic E., Rakic M., Orlovic S., & Galovic V. 2016. An insight into phylogeographic variability in rDNA regions of three lignicolous fungal species. Fungal Biology, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S19595] [ The following blocks are input data for analysis step 18755 ] BEGIN TAXA; TITLE TaxaForAnalysisStep18755; DIMENSIONS NTAX=16; TAXLABELS Ganoderma_wiiroense Polyporus_varius_EST Polyporus_varius_GER Polyporus_varius_GER2 Polyporus_varius_RUS Polyporus_varius_StaraPl Polyporus_varius_StaraPl2 Polyporus_varius_StaraPl3 Polyporus_varius_StaraPl4 Polyporus_varius_Tara Polyporus_varius_Tara2 Polyporus_varius_USA Polyporus_varius_USA2 Polyporus_varius_USA3 Polyporus_varius_USA4 Polyporus_varius_USA5 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37370] TITLE Polyporus_varius_ITS_alignment; LINK TAXA = TaxaForAnalysisStep18755; DIMENSIONS NCHAR=563; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Ganoderma_wiiroense TGTAGCTGGCCTTCCG--AGGCATGTGCACGCCCTGCTCA-TCCACTCT--ACACCTGTGCACTCACTGTGGGCTTCAGGCAT---TATTGCGGAGCGCGTTCCTCACTGGACTTGTGGAAGCAGTGTGT---CTGTGCCTACGTTT-ATCACAAACTCTATAAAGTATCAGAATGTGTATTGCGATGTAACGCATCTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCATGCCTGTTTGAGTGTCATGAAATCTTCAACCTACGAGCTTTT--GTGGTTTG--TAG-GCTTGGACTTGGAG--GCTTGTCGGC-CGTTCTTGGTCGGCTTCTCTTAAATGCATTAGCTTGGTTCCTT-GCGGATCGGCTCTCGGTGTGATAAT-GTCTACGCTGCGACCGTGAAGCGT-TTGGCGAGCTTCTAACCGTCTCTTTGAGACAGCTTTATGACC Polyporus_varius_EST TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGG---AACTGGGCTCACATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTTGTGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCCCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_GER TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCAGGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_GER2 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGG---AACTGGGCTCACATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTTGTGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCCCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_RUS TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGG---AACTGGGCTCACATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTTGTGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCCCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_StaraPl TGCAGCTGGCCTTTTAC{CT}GGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_StaraPl2 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATCAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_StaraPl3 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGAT{CT}AGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCAAGCTTCTAACTTGTCTCTTG{AT}GACA-CTCTTTGACA Polyporus_varius_StaraPl4 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCA{AG}GCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_Tara TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGG---AACTGGGCTCACATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTTGTGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCCCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_Tara2 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCACTCTCCTGTGTGGTCTTAGTTGATCTTACGGGGGAAGGGGGG-AACTGGGCTTGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAACGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGTTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGTGACCGTGAAGCGC-TCGGCAAGCTTCTAACTTGTCTCTTG{AT}GACA-CTCTTTGACA Polyporus_varius_USA TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTTGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCGCTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGGGGGAACTGGGCTCGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAATGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCACCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGCTTTTGCTAGAGCTTGGACTTGGAGAGTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGCGACCGTGAAGCGCCTTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_USA2 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCGCTCTCCTGTGTGA??TTAGTTGATCTTACGGGGGAGGGGGGG-AACTGGGCTCGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAATGCATTTAT{AC}TACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGCTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGCGACCGTGAAGCGCCTTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_USA3 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCGCTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGGGG-AACTGGGCTCGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAATGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGGGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGCTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTGTACTCCGCGACCGTGAAGCGCCTTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_USA4 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCGCTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGGGG-AACTGGGCTCGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAATGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGCTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGCGACCGTGAAGCGCCTTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA Polyporus_varius_USA5 TGCAGCTGGCCTTTTACCGGGCAAGTGCTCGCCCTTTCGAATCCACTCTCTACACCTGTGCACTTATTGTGGGTCTTGGTTTTGTTCGCTCTCCTGTGTGATCTTAGTTGATCTTACGGGGGAGGGGGGG-AACTGGGCTCGCATTTTATCACAAACCCCTTCA-GTATCAGAATGTTTATTGCGATATAATGCATTTATATACAACTTTCAGCAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACCTTGCGCTCCTTGGTATTCCGAGGAGCACGCCTGTTTGAGTGTCGTGAAATTCTCAACCTACAAACACTT-TGTGCTTTTGCTAG-GCTTGGACTTGGAG-GTGTTGCGGGCTCGATTAGAGTCGGCTCCTCTTAAATGCATTAGCTTGATTCCTTTGTGGATCGGCTCTCGGTGTGATAATTGTCTACTCCGCGACCGTGAAGCGCCTTGGCAAGCTTCTAACTTGTCTCTTGAGACA-CTCTTTGACA ; END; [ The following blocks are output data for analysis step 18755 ] BEGIN TREES; TITLE Polyporus_varius_ITS; LINK TAXA = TaxaForAnalysisStep18755; TREE P_varius = [&R] (Ganoderma_wiiroense:0.10176057,((Polyporus_varius_Tara2:0.0,(Polyporus_varius_GER:0.0,(Polyporus_varius_StaraPl:0.0,(Polyporus_varius_StaraPl2:0.0,(Polyporus_varius_StaraPl3:0.0,Polyporus_varius_StaraPl4:0.0)0.1310:0.0)0.0420:0.0)0.0460:0.0)0.1260:0.0)0.9860:0.00528933,((Polyporus_varius_GER2:0.0,(Polyporus_varius_EST:0.0,(Polyporus_varius_RUS:0.0,Polyporus_varius_Tara:0.0)0.2100:0.0)0.1520:0.0)0.9800:0.00400915,(Polyporus_varius_USA:0.0036336,(Polyporus_varius_USA2:-1.957E-5,(Polyporus_varius_USA4:-3.612E-5,(Polyporus_varius_USA3:0.00385019,Polyporus_varius_USA5:-6.708E-5)0.2410:3.612E-5)0.2300:1.957E-5)0.6900:1.5191E-4)0.9320:0.00742941)0.5690:0.00234039)0.0000:0.08793298); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97403] END;