#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on September 15, 2025; 13:57 GMT

TreeBASE (cc) 1994-2008

Study reference:
Gurgel C., Fredericq S., & Norris J. 2003. Phylogeography of Gracilaria tikvahiae
(Gracilariaceae, Rhodophyta): a study of genetic discontinuity in a continuously
distributed species based on molecular evidence. Journal of Phycology, null.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S1068]

[ The following blocks are input data for analysis step 1879 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep1879;
        DIMENSIONS NTAX=16;
        TAXLABELS
            Gracilaria_tikvahiae_isolate01
            Gracilaria_tikvahiae_isolate02
            Gracilaria_tikvahiae_isolate03
            Gracilaria_tikvahiae_isolate04
            Gracilaria_tikvahiae_isolate06
            Gracilaria_tikvahiae_isolate07
            Gracilaria_tikvahiae_isolate08
            Gracilaria_tikvahiae_isolate09
            Gracilaria_tikvahiae_isolate10
            Gracilaria_tikvahiae_isolate11
            Gracilaria_tikvahiae_isolate12
            Gracilaria_tikvahiae_isolate13
            Gracilaria_tikvahiae_isolate15
            Gracilaria_tikvahiae_isolate18
            Gracilaria_tikvahiae_isolate19
            Gracilaria_tikvahiae_isolate20
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M1375]

	TITLE ITS;
	LINK TAXA = TaxaForAnalysisStep1879;
	DIMENSIONS NCHAR=1087;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880       890       900       910       920       930       940       950       960       970       980       990       1000       1010       1020       1030       1040       1050       1060       1070       1080       ]
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Gracilaria_tikvahiae_isolate01     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAACTTTTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGTGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate02     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAACTTTTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAA?CATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGTGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate03     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAACTTTTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGTATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGTGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGAAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGTACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate04     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAACTTTTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGTGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGTCCACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGA?CTGAGAAAACAATAATCTTTAGCATGAAAGAGAAACGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate06     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCG??????????????????????????????????????AAGTTGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAA??????????????????????????????????????????????????????????????????????????????????
Gracilaria_tikvahiae_isolate07     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTATGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTC??????CA-CAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAACGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCTATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate08     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCACTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate09     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTG-TTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACG-A-CAA-CTGCGAAACGTA-TGCGAATTGCA????TCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate10     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate11     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCAAATTGGTGCCTTTCTTTTTCTTGAAACGCAAACAGTTTCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTTATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGGT
Gracilaria_tikvahiae_isolate12     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGC-AACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTT-TTCAAGGTTGAGAATTTTAATG?TCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCCTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate13     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTTGGAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTATTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCAAATTGGTGCCTTTCTTTTTCTTGAAACGCAAACAGTTTCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTTATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGGT
Gracilaria_tikvahiae_isolate15     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAGAAGAAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCAACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCATAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTCCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGATGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTCTCCTTGAAACGCAAGCAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGCGCT
Gracilaria_tikvahiae_isolate18     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate19     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTT--GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGGATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGTAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
Gracilaria_tikvahiae_isolate20     CTTAGGACAGCCGGAAGATGTGGTTCATTTTGTTTTGGTACTGGGGGGGTTAAGGCATGGGCTATTATCGATCATGCAAACAAAGTTTTTTGTATTATGAACTGTTTAAGAGCTGCATTTCGAAGGTCAAGTACGACATTCAGAGTGAGTGTGTTCCAGTAGATATAAAAACGTGCAAGTTCATACTAGTCTGTGAAGCTTCCCCTGCAATCTAGTCCACACAAAAGTAAAAACCCATCCAGGGCTCTAAAGTTATCACGCGCATACCTTTGTCTTTCAAAC--TTTTTTATTACTTTAAAACTAGAACCCACAAACCCATAAACAGCTAACCATGTGTCTGAAAAATTACAACTCGTAACGGTGGATGTCTCGGCTCCTACATCGATGAAGAACGTAGCAAACTGCGAAACGTAATGCGAATTGCAGAACTCGTGAATCATCAAATTTTT-GAACGCAAGTGGCGCTCGCGGGTAACCCTGCGAGCATGTCTGTTTGAGTGTCCGTACAAATTGGACTTTGGCATTCTGCAGTGCTTGTCGAGAATAGGGATAGGCCGGGCTAGAGTCGTAGTCCTGCTTCATTTTTTTGGAGTAAGGAATGATTCGCCTGGCGTTTCCAATAATATTCTCCGAATGTTGCAATATGAGTGCCGCTGATGGGTGCGTCCGCAGTCTTATTCAAGGTTGAGAATTTTATTGTTCTCCCTGAATTGCATGTTGGT-CACCTGAAGATAGTATAGGCAACACACTTACAAGTCTTCCTAGGCGGGTCTTCCTTGCATGTGCAAATATTTTCTTTTCCTTCTCCAAAAGGCCGTTCAACGGTCCGGGAAAAAGTTGTGCATTGTGGTGGAACTGTTTTAGAGTCCAAATCAAGACTTCTCTGCTGCGAATTGGTGCTTTTCTTTTTCTTGAAACGCAAACAGTTCCGCAGTGCGATTAGTTTTTGGTTTCAGTGACTCCGGTTTCACTGTTCGCGATGTTTCAGCTGAGAACTGAGAAAACAATAATATTTAGCATGAAAGAGAAGCGGTTTGCCCGGTAGTGATTGTAGTGCATGATCTGTCTAGAAAAACGCAGTGCT
;
END;

BEGIN CODONS;
CODONPOSSET * CodonPositions (CHARACTERS = ITS) = 
		N: 1-1087;
CODONPOSSET  CodonPositions (CHARACTERS = ITS) = 
		N: 1-1087;
END;
[ The following blocks are output data for analysis step 1879 ]
BEGIN TREES;
      TITLE Tb6654;
      LINK TAXA = TaxaForAnalysisStep1879;
      TREE Tree_1 = [&R] (Gracilaria_tikvahiae_isolate01,(Gracilaria_tikvahiae_isolate02,Gracilaria_tikvahiae_isolate03,Gracilaria_tikvahiae_isolate04,(Gracilaria_tikvahiae_isolate06,Gracilaria_tikvahiae_isolate07,(Gracilaria_tikvahiae_isolate08,Gracilaria_tikvahiae_isolate10,((Gracilaria_tikvahiae_isolate11,Gracilaria_tikvahiae_isolate13),Gracilaria_tikvahiae_isolate12),Gracilaria_tikvahiae_isolate18,Gracilaria_tikvahiae_isolate19),Gracilaria_tikvahiae_isolate09,Gracilaria_tikvahiae_isolate15,Gracilaria_tikvahiae_isolate20)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5841]


END;
BEGIN TREES;
      TITLE Tb6654;
      LINK TAXA = TaxaForAnalysisStep1879;
      TREE Tree_2 = [&R] (Gracilaria_tikvahiae_isolate01,(Gracilaria_tikvahiae_isolate02,Gracilaria_tikvahiae_isolate03,Gracilaria_tikvahiae_isolate04,((Gracilaria_tikvahiae_isolate06,(Gracilaria_tikvahiae_isolate08,Gracilaria_tikvahiae_isolate10,((Gracilaria_tikvahiae_isolate11,Gracilaria_tikvahiae_isolate13),Gracilaria_tikvahiae_isolate12),Gracilaria_tikvahiae_isolate18,Gracilaria_tikvahiae_isolate19)),Gracilaria_tikvahiae_isolate07,Gracilaria_tikvahiae_isolate09,Gracilaria_tikvahiae_isolate15,Gracilaria_tikvahiae_isolate20)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5842]


END;
BEGIN TREES;
      TITLE Tb6654;
      LINK TAXA = TaxaForAnalysisStep1879;
      TREE Tree_3 = [&R] (Gracilaria_tikvahiae_isolate01,(Gracilaria_tikvahiae_isolate02,Gracilaria_tikvahiae_isolate03,Gracilaria_tikvahiae_isolate04,((Gracilaria_tikvahiae_isolate06,Gracilaria_tikvahiae_isolate08,Gracilaria_tikvahiae_isolate10,((Gracilaria_tikvahiae_isolate11,Gracilaria_tikvahiae_isolate13),Gracilaria_tikvahiae_isolate12),Gracilaria_tikvahiae_isolate18,Gracilaria_tikvahiae_isolate19),Gracilaria_tikvahiae_isolate07,Gracilaria_tikvahiae_isolate09,Gracilaria_tikvahiae_isolate15,Gracilaria_tikvahiae_isolate20)));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr5843]


END;