#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 17, 2025; 9:33 GMT

TreeBASE (cc) 1994-2008

Study reference:
T�nsberg T., Blom H.H., Goffinet B., Holtan-hartwig J., & Lindblom L. 2016. The cyanomorph
of Ricasolia virens comb. nov. (Lobariaceae, lichenized Ascomycetes).
Opuscula Philolichenum, 15.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19339]

[ The following blocks are input data for analysis step 18820 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep18820;
        DIMENSIONS NTAX=12;
        TAXLABELS
            Lobaria_scrobiculata_AF350297
            Ricasolia_amplissima_AF524923
            Ricasolia_amplissima_AF524926
            Ricasolia_quercizans_AF524921
            Ricasolia_quercizans_HQ650694
            Ricasolia_subdissecta_KC011029
            Ricasolia_virens_KJ577709
            Ricasolia_virens_KJ577710
            Ricasolia_virens_KJ577711
            Ricasolia_virens_KP941424
            Ricasolia_virens_KP941425
            Ricasolia_virens_KP941426
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M37413]

	TITLE Ricasolia_virens_ITS;
	LINK TAXA = TaxaForAnalysisStep18820;
	DIMENSIONS NCHAR=380;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                          10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380]
[                                           .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .]
Lobaria_scrobiculata_AF350297      GGCCCCCAACTCTTCACCCTGTGCGCATCCAACCCGTGTTGCTTTGACGGCATTCACGCCGTCCAAGAACCCATC---AAACTC-GGCAATCAGTGTCGTCGGAG--CCCAATCTAATA---ACTAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCGAGGGGCATACCTGTTCGAGCGTCATTACACCC-CTCAAGCCTTGGCTTGGTGTTGGGC-GACGTCCC-CCGGGACGGGCCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCAAGCGCAGTAGA
Ricasolia_amplissima_AF524923      CCCCCCCACCTCTTCACCCGATGGGTACCCAGCA-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAAGACCCCCCCCCAAACTCCAGTGATCCCTGTCGTCGGAG--CCATATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCGCGTGCTTGGTGTTGGGCCGGCGTCCCCCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGACTTCGAGCGCAGTAGA
Ricasolia_amplissima_AF524926      CCCCCCCACCTCTTCACCCGATGGGTACCCAGCA-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAAGACCCCCCCCCAAACTCCAGTGATCCCTGTCGTCGGAG--CCATATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCGCGTGCTTGGTGTTGGGCCGGCGTCCCCCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGACTTCGAGCGCAGTAGA
Ricasolia_quercizans_AF524921      CCCCCCCACCTCTTCACCCGATGGGTACCCAGCA-GTGTTTCTTTGGCGGCTCGCACGCCGCCCGAGGACCCCCCC-AAAACTCCCGTGATCAGTGTCGTCGGAGAACCATATCGAATACGCACCAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCCCGTCAAGCGT-TGCTTGGTGTTGGGCCGGCGTCCCTTCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGACTTCGAGCGCAGTAGA
Ricasolia_quercizans_HQ650694      CCCCCCCACCTCTTCACCCGATGGGTACCCAGCA-GTGTTTCTTTGGCGGCTCGCACGCCGCCTGAGGACCCCCCC-AAAACTCCCGTGATCAGTGTCGTCGGAGAACTATATCGAATACGCACCAAAAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCCCGTCAAGCGT-TGCTTGGTGTTGGGCCGGCGTCCCTTCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGACTTCGAGCGCAGTAGA
Ricasolia_subdissecta_KC011029     CCCCCCTGACTCTTCACCCAATGGGTACCCAGCGCGAGTTTCTTTGGCGGCGCAGGCGCCGTCCGAGGACCCCCCAC-AACCTTCGTGAATGAATGTCGTCGGAG---CGTGATGGA-ATAAAGCAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTTCGAGCGTCATTACACCC-GTCAAGCTTGTGCTTGGTGTTGGGCCGGCGTCC-TCCGGGACGGGCCTGAATGGCAGTGGCGGTCCAGCGCGCCTTCGAGCGGAGTCGA
Ricasolia_virens_KJ577709          ------------------------------------------------------------------------------------------------------------------GAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
Ricasolia_virens_KJ577710          CCCCCCCACCTCTCCACCCGATGGGTACCCAGCC-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAGAACCCCCCGTCAAACCCCCGCGATCCCTGTCGTCGGAG--CCGTATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
Ricasolia_virens_KJ577711          CCCCCCCACCTCTCCACCCGATGGGTACCCAGCC-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAGAACCCCCCGTCAAACCCCCGCGATCCCTGTCGTCGGAG--CCGTATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
Ricasolia_virens_KP941424          CCCCCCCACCTCTCCACCCGATGGGTACCCAGCC-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAGAACCCCCCGTCAAACCCCCGCGATCCCTGTCGTCGGAG--CCGTATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
Ricasolia_virens_KP941425          CCCCCCCACCTCTCCACCCGATGGGTACCCAGCC-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAGAACCCCCCGTCAAACCCCCGCGATCCCTGTCGTCGGAG--CCGTATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
Ricasolia_virens_KP941426          CCCCCCCACCTCTCCACCCGATGGGTACCCAGCC-GCGTTTCTTTGGCGGCTCGCACGCCGCCCGAGAACCCCCCGTCAAACCCCCGCGATCCCTGTCGTCGGAG--CCGTATCGAATACGCA-CAAAA-CTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCGAGGGGCATGCCTGTCCGAGCGTCATTACACCC-GTCAAGCTCCGGCTCGGTGTTGGGCCGGCGTCCCTCCGGGACGGGTCCGAATGGCAGTGGCGGTCCGGCGTGGCTTCGAGCGCAGTAGA
;
END;

[ The following blocks are output data for analysis step 18820 ]
BEGIN TREES;
      TITLE Ricasolia_virens_ITS;
      LINK TAXA = TaxaForAnalysisStep18820;
      TREE 'PAUP_1' = [&R] (Lobaria_scrobiculata_AF350297:0.094213,(Ricasolia_subdissecta_KC011029:0.209321,(Ricasolia_virens_KJ577709:1.0E-8,(((Ricasolia_amplissima_AF524923:1.0E-8,Ricasolia_amplissima_AF524926:1.0E-8):0.010065,(Ricasolia_quercizans_AF524921:1.0E-8,Ricasolia_quercizans_HQ650694:0.005555):0.018961):0.040289,(Ricasolia_virens_KP941424:1.0E-8,(Ricasolia_virens_KP941425:1.0E-8,(Ricasolia_virens_KP941426:1.0E-8,(Ricasolia_virens_KJ577710:1.0E-8,Ricasolia_virens_KJ577711:1.0E-8):1.0E-8):1.0E-8):1.0E-8):0.003018):0.0):0.022193):0.094213);
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr97535]


END;