#NEXUS
[!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file.


Generated on July 22, 2025; 8:34 GMT

TreeBASE (cc) 1994-2008

Study reference:
Moslemi A., Ades P., Groom T., Crous P.W., Nicolas M.E., & Taylor P.W. 2016. Paraphoma
crown rot of pyrethrum (Tanacetum cinerariifolium). Plant Disease (APS Journal),
.

TreeBASE Study URI:  http://purl.org/phylo/treebase/phylows/study/TB2:S19636]

[ The following blocks are input data for analysis step 18829 ]
BEGIN TAXA;
        TITLE  TaxaForAnalysisStep18829;
        DIMENSIONS NTAX=14;
        TAXLABELS
            Neosetophoma_samarorum_CBS_138.96
            Paraphoma_chrysanthemicola_CBS_172.70
            Paraphoma_chrysanthemicola_CBS_522.66
            Paraphoma_dioscoreae_CBS_135100
            Paraphoma_dioscoreae_CPC_11355
            Paraphoma_dioscoreae_CPC_11361
            Paraphoma_fimeti_CBS_170.70
            Paraphoma_fimeti_CBS_368.91
            Paraphoma_radicina_CBS_102875
            Paraphoma_radicina_CBS_111.79
            Paraphoma_vinacea_BRIP_63682
            Paraphoma_vinacea_BRIP_63683
            Paraphoma_vinacea_BRIP_63684
            Paraphoma_vinacea_BRIP_63685
            ;
END;

BEGIN CHARACTERS;
[! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M38472]

	TITLE 'Tanacetum cinerariifolium Combined ITS, tef1 and TUB';
	LINK TAXA = TaxaForAnalysisStep18829;
	DIMENSIONS NCHAR=888;
	FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -;

MATRIX
[                                                 10        20        30        40        50        60        70        80        90        100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870       880        ]
[                                                  .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .         .        ]
Neosetophoma_samarorum_CBS_138.96         CCGTAGGTGAACCTGCGGAAGGATCATTACATTCAGTAGCTTGCTACTGTTAGGGGGGTTGATCAGCCTGTATAGTATCAC---------------------TACTGATGAGCAGCACAACCCT--CTGTCTA-TACCCTTGTCTTTTGCGCACTCATGTTTCCTCGGCGGGTCTATACCTGCCGGCTGGACAACTCTATAACCCTTTTAATTTTCAATCAGCGTCTGAAAA-ACATAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCCAT-TCCCTGGTGTTTGGACTCGCCTCAAAGCAATTGGCAGCCAGTGTTTTGGTATTGAAGCGCAGCACATTTTGCGTCTCCAGCCTAGAATACTTGCGTCCAGTAAGCCTTAACACGCGGCAGGGTAACCAAATTGGTGCCGCCTTCTGGCAGACCATCTCTGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAACGGCACCTCGGATCTCCAGCTCGAGCGCATGAACGTCTACTTCAATGAGGTGCGTGA-ATTACTCAG-CAGTGTCCTCGCGGCACGCGCATA-CTGACCTATTCGGTGTTCGCGAACATCAACACCATGACGCTCATCCACAATGCTAATGCCTCTCGCAGGAAGCCGCCGAACTCGGCAAGGGTTCATTCAAGTACGCTTGGGTCTTGGACAAGCTCAAGGCCGAGCGCGAGCGTGGTATCACCATCGAC
Paraphoma_chrysanthemicola_CBS_172.70     CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGTAT------------------------------------------CTCGCCTTCCAATTCTGCCTGTATTCCACCCTTGTTTGTCATA--CTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAACCAATTATAACCTATTTAATTTTCAATCAGCGTCTGAAAAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCT-----------GAGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTATA-CACCAGCTTCCAC-AAGCCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGTCCC---CCGGGCTACCGAAGGACGCGCATA-CGGACCGTTTTGGGTCTCACCAACATTATTACCATGACGCACATTTACGACGCTAATTCACTCCACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_chrysanthemicola_CBS_522.66     CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGTAT------------------------------------------CTCGCCTTCCAATTCTGCCTGTATTCCACCCTTGTTTGTCATA--CTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAACCAATTATAACCTATTTAATTTTCAATCAGCGTCTGAAAAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCT-----------GAGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTATA-CACCAGCTTCCAC-AAGCCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGTCCC---CCGGGCTACCGAAGGACGCGCATA-CTGACCGTTTTGGGTCTCACCAACATTATTACCATGACGCACATTTACGACGCTAATTCACTCCACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_dioscoreae_CBS_135100           CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGAAGTCTTGGGTAGGCGGTGCACCTTTAGCA-----------------------------------CGCTCTCTCAATTCTTCCTGTATTACACCCTTGTCTCTTAAAAACCTTCGTTTCCTCGGTAGGCTTG--CCTGCCGGCTGGATTCAACTATAACCTTTTTAATTTTCAATCAGCGTCTGAATAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCATATCCCCTGGGATAGGACTCGCCTCAAAGTAATTGGCAGCCAGTGTTTTGGTTT-GAAGCGCAGCACAAATCGCGAGTCAAGCCCGAA-TAGTGGTGTCCATTAAGTTATGACAGCGTGCAGGGTAACCAGATTGGTGCTGCCTTCTGGCAGACTATCTCCGGCGAGCATGGTCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTGCCAAGCCTTGCTCCTTTTGTACGTAGGACGTGCAGA-CTGACCAATTCGGACCTCGCCAACAAAAACACCATGACGCACATTCACATTACTAACACCTGCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_dioscoreae_CPC_11355            CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGAAGTCTTGGGTAGGCGGTGCACCTTTAGCA-----------------------------------CGCTCTCTCAATTCTTCCTGTATTACACCCTTGTCTCTTAAAAACCTTCGTTTCCTCGGTAGGCTTG--CCTGCCGGCTGGATTCAACTATAACCTTTTTAATTTTCAATCAGCGTCTGAATAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCATATCCCCTGGGATAGGACTCGCCTCAAAGTAATTGGCAGCCAGTGTTTTGGTTT-GAAGCGCAGCACAAATCGCGAGTCAAGCCCGAA-TAGTGGTGTCCATTAAGTTATGACAGCGTGCAGGGTAACCAGATTGGTGCTGCCTTCTGGCAGACTATCTCCGGCGAGCATGGTCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTGCCAAGCCTTGCTCCTTTTGTACGTAGGACGTGCAGA-CTGACCAATTCGGACCTCGCCAACAAAAACACCATGACGCACATTCACATTACTAACACCTGCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_dioscoreae_CPC_11361            CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGAAGTCTTGGGTAGGCGGTGCACCTTTAGCA-----------------------------------CGCTCTCTCAATTCTTCCTGTATTACACCCTTGTCTCTTAAAAACCTTCGTTTCCTCGGTAGGCTTG--CCTGCCGGCTGGATTCAACTATAACCTTTTTAATTTTCAATCAGCGTCTGAATAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCCATATCCCCTGGGATAGGACTCGCCTCAAAGTAATTGGCAGCCAGTGTTTTGGTTT-GAAGCGCAGCACAAATCGCGAGTCAAGCCCGAA-TAGTGGTGTCCATTAAGTTATGACAGCGTGCAGGGTAACCAGATTGGTGCTGCCTTCTGGCAGACTATCTCCGGCGAGCATGGTCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTGCCAAGCCTTGCTCCTTTTGTACGTAGGACGTGCAGA-CTGACCAATTCGGACCTCGCCAACAAAAACACCATGACGCACATTCACATTACTAACACCTGCAACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_fimeti_CBS_170.70               CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAGTACAGAAGCGTTGTGTTGGTTGAGTTGTGCCGGTTGAGTCTCGCTGACAAGTGGGATTCCTGGTGGCAACTCCCTTCATAATTCTCCCTGTCTATCATCCTTGTCTTTTGCGTACTATTGTTTCCTCGGTGGGCTTG--CCCACCGGTTGGACAACCTTATAACCTATTTAATTTTCAATCAGCGTCTGAAATAATATAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCTTT-TC-CACGCGATCAGACTCGCCTTAAAAAAATTGGCAGCCAGTGTTTTGGTTTTGAAGCGCAGCACAAGTCGCGATTCA-GCTTATATCACTAGTTTCCATTAAGCATTGACAGCTTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTGCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTGTCATCACTT---CATTTCTCATGCAGGACGCGCAGA-CTGACCGATTCGTCGCTCGCCAACAACAACACCATGACGCACATTTACAATGCTGATGCTCGCCACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_fimeti_CBS_368.91               CTGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAGTACAGAAGCGTTGTGTTGGTTGAGTTGTGCCGGTTGAGTCTCGCTCACAAGTGGGGTTCCTGGTAGCAACTCCCTTCATAATTCTTCCTGTCTATCATCCTTGTCTTTTGCGTACTATTGTTTCCTCGGCGGGCTTG--CCCGCCGGCTGGACAACCTTATAACCTATTTAATTTTCAATCAGCGTCTGAAATACTATAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCCTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCTTT-TC-CACGCGATTAGACTCGCCCTAAAATAATTGGCAGCCAGTGTTTTGGTTTTGAAGCGCAGCACAAGTCGCGATTCA-GCTTATATCACTAGTTTCCATTAAGCATCGACAGCTTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCACGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGACCTGCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTGTCATCACTT---CATTTCTCATGCAGGACGCGCAGA-CTGACTGATTCGTCGCTCGCCAACAACAACACCATGACGCACATTTACAATGCTGATGCTCGCCACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAC
Paraphoma_radicina_CBS_102875             CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGAAGAGTTGAGATGGTTGAGTAT------------------------------------------CTCGCCTCTCAATTCTCGCTGTATTTTACCCTTGTTTTTCTCATACTATTATTTCCTCGGCAGGCTCG--CCTGCCGGGTGAAACAACTTCAAACCTGTTTAATTTTCAATCAGCGTCTGAACA-AATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCCTT-GCTCTAGTGGCGGGACTCGCCTCAAAGTAATTGGCAGCCAGTGTTTTGGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGTCTATA-CGCTAGTTTCCAC-AAGTCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGATCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTCACATGACTC---CATCGCTGCTTCGGGGCGCAAAAAACGGACCGATCCGGGTCTCGCCAACAACAACACCACGACGCACATCCATGTTGCTAACACACTCCACAGGAAGCTGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGCTGAAGGCCGAGCGTGAGCGTGGTATCACCATTGAC
Paraphoma_radicina_CBS_111.79             CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGAAGAGTTGAGATGGTTGAGTAT------------------------------------------CTCGCCTCTCAATTCTCGCTGTATTTTACCCTTGTTTTTCTCATACTATTATTTCCTCGGCAGGCTCG--CCTGCCGGGTGAAACAACTTCAAACCTGTTTAATTTTCAATCAGCGTCTGAACA-AATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTCTGCTTGGTGTTGGGTGTTTGTCCTT-GCTCTAGTGGCGGGACTCGCCTCAAAGTAATTGGCAGCCAGTGTTTTGGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGTCTATA-CGCTAGTTTCCAC-AAGTCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCCGGTGTCTACAATGGCACCTCGGATCTCCAGCTCGAGCGCATGAACGTCTACTTCAACGAGGTGCGTCACATGACTC---CATCGCGGCTTCAGGGCGCGCAGA-CTGACCGATCCGGGTCTCGCCAACAACAACACCACGACGCACATCCATGTTGCTAACACACTCCACAGGAAGCTGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTCGACAAGCTGAAGGCCGAGCGTGAGCGTGGTATCACCATTGAC
Paraphoma_vinacea_BRIP_63682              CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGT--------------------------------------------------------------CTGTATTCTACCCTTGTTTGTCATATACTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAGCCATTTATAACCTTTTTAATTTTCAATCAGCGTCTGAAAAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCC------------GAGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTACA-CGCCCGCTTCCAC-AAGCCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGGCCC---CGGGTCTACCTCTGGAGGCGCAGA-CTGACCGATTTGGGTCTCGCCAACATCAACACCATGACGCACATGCACGATGCTAACGCACTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTTGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAT
Paraphoma_vinacea_BRIP_63683              CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGT--------------------------------------------------------------CTGTATTCTACCCTTGTTTGTCATATACTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAACCATTTATAACCTTTTTAATTTTCAATCAGCGTCTGAAAACAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCC------------GAGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTACA-CGCCCGCTTCCAC-AAGCCTTGACAGTGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGGCCC---CGGGCCTACCTCTGGACGCGCAGA-CTGACCGATTTGGGTCTCGCCAACATCAACACCATGACGCACATGCACGATGCTAACGCACTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTTGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAT
Paraphoma_vinacea_BRIP_63684              CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGT--------------------------------------------------------------CTGTATTCTACCCTTGTTTGTCATATACTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAACCATTTATAACCTTTTTAATTTTCAATCAGCGTCTGAAAAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCC------------GCGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTACA-CGCCCGCTTCCAC-AAGCCTTGACAGCGTGCAGGGTAACCAGATTGGCGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGGCCC---CGGGTCTACCTCTGGACGCGCAGA-CTGACCGATTTGGGTCTCGCCAACATCAACACCATGACGCACATGCACGATGCTAACGCACTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTTGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAT
Paraphoma_vinacea_BRIP_63685              CCGTAGGTGAACCTGCGGAAGGATCATTACCTTT--CAATGCAGCAGAATTGGGATGGTTGAGT--------------------------------------------------------------CTGTATTCTACCCTTGTTTGTCATATACTATTATTTCCTCGGCAGGCTTG--CCTGCCGAGTGAAGCCATTTATAACCTTTTTAATTTTCAATCAGCGTCTGAAAAAAATTAATAATTACAACTTTCAACAACGGATCTCTTGGTTCTGGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAGTGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGTATTCCATGGGGCATGCCTGTTCGAGCGTCATTTGTACCTTCAAGCTTTGCTTGGTGTTGGGTGTTTGTCC------------GAGGGACTCGCCTTAAAGTAATTGGCAGCCAGTGTTT-GGTTTTGAAGCGCAGCACAAGTCGCGATTCAAGGCTACA-CGCCCGCTTCCAC-AAGCCTTGACAGCGTGCAGGGTAACCAGATTGGTGCCGCCTTCTGGCAGACCATCTCCGGCGAGCATGGCCTCGACGGCTCTGGTGTCTACAATGGCACCTCGGACCTCCAGCTCGAGCGCATGAATGTCTACTTCAACGAGGTGCGTCACGTGGCCC---CGGGTCTACCTCTGGAGGCGCAGA-CTGACCGATTTGGGTCTCGCCAACATCAACACCATGACGCACATGCACGATGCTAACGCACTCTACAGGAAGCCGCCGAACTCGGCAAGGGTTCCTTCAAGTACGCATGGGTGCTTGACAAGTTGAAGGCCGAGCGTGAGCGTGGTATCACCATCGAT
;
END;

[ The following blocks are output data for analysis step 18829 ]
BEGIN TREES;
      TITLE 'Tanacetum cinerariifolium Combined ITS, tef1 and TUB';
      LINK TAXA = TaxaForAnalysisStep18829;
      TREE Untitled_Tree = [&R] (Neosetophoma_samarorum_CBS_138.96,(Paraphoma_dioscoreae_CBS_135100,((Paraphoma_dioscoreae_CPC_11355,Paraphoma_dioscoreae_CPC_11361),((Paraphoma_chrysanthemicola_CBS_172.70,(Paraphoma_fimeti_CBS_170.70,Paraphoma_fimeti_CBS_368.91)),((Paraphoma_vinacea_BRIP_63684,(Paraphoma_vinacea_BRIP_63683,Paraphoma_vinacea_BRIP_63682)),((Paraphoma_vinacea_BRIP_63685,Paraphoma_chrysanthemicola_CBS_522.66),(Paraphoma_radicina_CBS_111.79,Paraphoma_radicina_CBS_102875)))))));
[!  TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr98798]


END;