#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on November 17, 2025; 1:06 GMT TreeBASE (cc) 1994-2008 Study reference: Jaganathan king S., Ooi P.T., Phang L.Y., Allaudin Z.B., Loh W.H., Tee C.Y., How S.P., Yip K., Choo R., & Lim B.K. 2016. Phylogenetic Characterization of genes encoding for viral envelope glycoprotein (ORF5) and nucleocapsid protein (ORF7) of Porcine Reproductive & Respiratory Syndrome Virus found in Malaysia in 2013 and 2014. BMC Veterinary Research, . TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S20336] [ The following blocks are input data for analysis step 19791 ] BEGIN TAXA; TITLE TaxaForAnalysisStep19791; DIMENSIONS NTAX=27; TAXLABELS Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M39422] TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF7; LINK TAXA = TaxaForAnalysisStep19791; DIMENSIONS NCHAR=373; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_ ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCTAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACTCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAACGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626 ATGCCAAATAACAACGGCAAGCAGCGAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAGCCCGGAGAAGCCCCATTTTCCTCTAGCGACCGAAGATGACGTCAGGCATCACTTCACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTTAACCAGGGCGCCGGAACTTGTACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_ ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAATCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACATACTGTGCGTCTGATTCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158 ATGCCAAATAATAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCTCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCATCATACTGTGCGTCTGATCCGCGCCACAGCATCACCTTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_ ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7 ATGCCAAATAA{CT}AACGGCAAGCAGCAGAAGAGAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGCAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTTGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACCGCCTTCAATCAGGGCGCTGGAACTTGTGCACTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCAACACACTGTGCGTCTGATTCGCGCCACAGCATCACCCCAAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAAACCCGAGAAGCCCCCATTTTCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCGGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGCAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGCAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717 ATGCCAAATAACAACGGCAAGCAGCAAAAGAAAAAGAAGGGGAATGGCCAGCCAGTCAATCAGCTGTGCCAAATGCTGGGTAAGATCATCGCCCAACAAAACCAGTCCAGAGGCAAGGGACCGGGGAAGAAAAATAGGAAGAAAAACCCGGAGAAGCCCCATTTCCCTCTAGCGACTGAAGATGACGTCAGGCATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCGATCCAGACTGCCTTCAATCAGGGCGCTGGAACTTGTGCCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCGACGCAACATACTGTGCGTCTGATCCGCGCCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369 ATGCCAAATAACAACGGCAAGCAGCAGAAGAGAAAGAAGGGGGATGGCCAGCCAGTCAATCAGCTGTGCCAGATGCTGGGTAAGATCATCGCTCAGCAAAACCAGTCCAGAGGCAAGGGACCGGGAAAGAAAAATAAGAAGAAAAACCCGGAGAAGCCCCATTTTCCTCTAGCGACTGAAGATGATGTCAGACATCACTTTACCCCTAGTGAGCGGCAATTGTGTCTGTCGTCAATCCAGACCGCCTTTAATCAAGGCGCTGGGACTTGCACCCTGTCAGATTCAGGGAGGATAAGTTACACTGTGGAGTTTAGTTTGCCTACGCATCATACTGTGCGCCTGATCCGCGTCACAGCATCACCCTCAGCATGA- ; END; [ The following blocks are output data for analysis step 19791 ] BEGIN TREES; TITLE Porcine_Reproductive_&_Respiratory_Syndrome_Virus_ORF7; LINK TAXA = TaxaForAnalysisStep19791; TREE Imported_tree_1 = [&R] ((((((((((Porcine_reproductive_and_respiratory_syndrome_virus._DN1107_JQ860406_:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._DN444_JQ860392:0.0)0.8330:0.00270378,Porcine_reproductive_and_respiratory_syndrome_virus._DT7_JQ860419:0.00271456)0.5750:0.0027032,(Porcine_reproductive_and_respiratory_syndrome_virus._Sar01_2013_ORF7:0.01930034,Porcine_reproductive_and_respiratory_syndrome_virus._JN_HS_HM016158:0.00269981)0.5160:0.00264224)0.3390:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._BH58_10_JN626287:0.00269971)0.0040:0.00223806,(Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_F44_KM453699:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._BB0907_s34_KM453698:0.0)0.2220:0.0)0.4970:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._HCM_CC3_JQ860410:0.00269764)0.8560:0.00818816,((Porcine_reproductive_and_respiratory_syndrome_virus._07QN_FJ394029_:0.00542274,Porcine_reproductive_and_respiratory_syndrome_virus._XL2008_EU880436:0.00545264)0.1490:6.0597E-4,(Porcine_reproductive_and_respiratory_syndrome_virus._JXA1_EF112445:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._YD_JF748717:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._DC_JF748718:0.0)0.1860:0.0)0.2060:0.0)0.7700:0.0035538)0.8870:0.00830984,Porcine_reproductive_and_respiratory_syndrome_virus._NB_04_FJ536165:0.00535183)0.9380:0.01382699,Porcine_reproductive_and_respiratory_syndrome_virus._CH_1a_AY032626:0.01665389)1.0000:8.5212E-4,(Porcine_reproductive_and_respiratory_syndrome_virus._Sel01_2014_ORF7:0.0164737,((Porcine_reproductive_and_respiratory_syndrome_virus._ATCCVR_2332_U87392.3:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._RespPRRS_MLV_AF066183:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._RVRp22_KM386622_:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._FJSD_KP998474_:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._DK_2004_1_7_PI_KC862578:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._DK_1997_19407B_KC862576:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._YN_2011_JX857698:0.0,(Porcine_reproductive_and_respiratory_syndrome_virus._MN1843UTR_FJ629371:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._pMLV_MN184ORF56_FJ629369:0.0)0.0660:0.0)0.0130:0.0)0.0060:0.0)0.0050:0.0)0.0040:0.0)0.0020:0.0)0.0030:0.0)0.0170:0.0,Porcine_reproductive_and_respiratory_syndrome_virus._V7_HA_myc_FJ524376:0.0)0.3300:6.243E-4)1.0000:0.03888405); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr100901] END;