#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 13, 2024; 3:21 GMT TreeBASE (cc) 1994-2008 Study reference: Urban A., Neuner-plattner I., Krisai-greilhuber I., & Haselwandter K. 2004. Geodendron, a new form genus to accomodate anamorphs linked to the genus Tuber. Molecular Ecology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1111] [ The following blocks are input data for analysis step 1993 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1993; DIMENSIONS NTAX=35; TAXLABELS Aleuria_aurantiaca Balsamia_magnata Barssia_oregonensis Cazia_flexiascus Choiromyces_alveolatus Choiromyces_venosus Dingleya_verrucosa Discina_macrospora Disciotis_venosa Fischerula_subcaulis Geodendron_araucarioides Geodendron_hydrophobum Gyromitra_esculenta Helvella_lacunosa Hydnotrya_cerebriformis Labyrinthomyces_varius Leucangium_carthusianum Morchella_esculenta_AF279398 Morchella_esculenta_MEU42669 Neolecta_vitellina Otidea_concinna Otidea_onotica Peziza_badia Peziza_quelepidotia Rhizina_undulata Smardea_amethystina Taphrina_deformans Tuber_californicum Tuber_gibbosum Tuber_melanosporum Underwoodia_columnaris Verpa_conica Wilcoxina_mikolea Wilcoxina_rehmii Wynnella_silvicola ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M791] TITLE Geodendron_LSU; LINK TAXA = TaxaForAnalysisStep1993; DIMENSIONS NCHAR=575; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Aleuria_aurantiaca AACTGCGAGTGAAAGCGGCAAAAGCTCAAATTTGAAATCTGGCGT--CTTCGG--C?-TCC?A?TT?TAATTT??A?GGATATCTG-CGGAGTTGGCG--CCG?CCT-AAGTTCCTTGGAACA?GAC?TCATA?AGGGTGAGAATCCCGTGCCT---GGATGGCTGTCCATCTCCA-TGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAAA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAATC-TTTGGTGATCAG----CTGTGCTTC-----TGT-ACAGT--GCACTTGCCATTG-ATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAATT-TGAGGAATGTGGCTCTCT----TCGG--GGAGTG-TTATA?CCTCGA----TCATAATGCTGCCAGTTGGGACC-GAAGACCGC-GCTT---CGGCTA-?GATG Balsamia_magnata AACGGCGAGTGAA-GCGGCAAGTGCTCAAATTTTAAATCTGGCGT--CTACGA--CGTCCCGAGTTGTAATTTGGAGAGGCATCTTCGGGGGACAGCG--TCAGACT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGTCT---GCCTGGCTGTCTGATCCCT-TGTGAAGTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATATGGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAGCC-CCTAGCAAACAGCCTTCCCTACTCC------AGGGAGGT--CCACTTTCATTGGGGCTGGGCCAGCGTCGGTTAGTGTGGTGGGACAAAGGCGTAGGAAATGTGGCTCCTC----TCGA--GGAGTG-TTATAGTCCTGC----GTGCAATGCCACCTATGCTGACT-GAGGGCCGC-GCCT---CGGCGA-GGATG Barssia_oregonensis AACGGCGAGTGAA-GCGG?AAAAGCTCAAATTTGAAATCTGGCGT--CTCTGG--CG-TCCGAGTTGTAATTTGGAGAGGAATCTT-CGGGG-TCAGC-ACCAGACT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCAT---GCCTGGCTGCCTGGCCCCT-TGTGAAGGGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAGTGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACA---CGGCT-CCTGGCAAACAG-----CCTGCCCAGGCCATGG-GCGGT--GCACTTGCCT--GGGCTGGGCCAGCATCGGTTGG---AGTGGGACAAAGGCATGGGGAATGTGGCTCCTC----TTGG--GGAGTG-TTATAGCCCTTT----GTGCAATGCCGCCAACCCCGACT-GAGGGCCGC-GCCT---CGGCGA-GGATG Cazia_flexiascus AACGGCGAGTGAA-GCGGCCCAAGCTCAGATTTTAAATCTGGCGTCATTTTGA--CG-TCCGAGTTGTAGTCTGTAGAGGTGTATT-CGAGTGTAGAT--TTGGCTT-AAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAACCCCGTTAAC---GGCCTT-TGTCTTATGCTCATGTGAATCTCCCTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATACTGGCAAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGAACTCTGAACAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCACTTGCGACCAGACG---CACTT-GCAGCTGATCAA---TTCTCATTCT-----TTG-AGGGT--GCACTCGGTTGTCTTGTGGGTCAGCATCAGTTATGGCGGTGGGAAAAAGACCATGGGAATGTAGCTCCTT----CCGG--GGAGTG-TTATAGCCTGGG----GTGCAATGCTGCCTGCTGTGACT-GAGGACCGC-GCCT---CGGTGA-GGATG Choiromyces_alveolatus AACGGCGAGTGAA-GCGGCAAGAGCTCAAATTTGAAATCTGGCGT--CCCCGA--CG-TCCGAGTTGTAATTTGGAGAGGCATCTT-CTGGAGGGGCC---CAGCCT-ATGTTCCTTGGAACAGGACGTCAT-GAGGGTGAGAATCCCGTTCTC---GGCTGGATGTCCCCACCTG-CATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCC-CTGGACAAACAA----CCTACCTTC-----TGG-TGGGT--GCACTTGCCCAGGGT-CGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGCCGCGGGAATGTGGCTCCTC----TCGG--GGAGTG-TTATAGCCCTGG----GCGCCATGCCGTCAGTCCCGACT-GAGGACCGC-GCTT---CGGCAA-GGATG Choiromyces_venosus AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGACGT--CCCCGA--CG-TCCGAGTTGTAATTTGGAGAGGCATCTT-CTGGAGGGGCC---CAGCCT-ATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCTT---GGCTGGATGTCCCCACCTG-TATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAGCC-TCGGGCAAACAA----CCCTCCTTC-----TGG-TGGGT--GCACTTGCCCTTGGC-TGGGCCAGCATCAGTTGGGAGGGCGGGATAAAGGCCCAGGGAATGTGGCTCCTC----TCGG--GGAGAGTTTATAGCCCAGG----GTGCCATGCCGCCCCTCCCGACT-GAGGACCGC-GCTT---CGGCAA-GGATG Dingleya_verrucosa AACGGTGAGTGAA-GCGGCAAGAGCTCAAATTTGAAATCTGGCGT--CGAGAGG-CG-TCCGACTTGTAATTTGGAGAGGCATCTT-CTGGTGGGGCC---GAGCCC-ATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCGT---GGCTGGGTGCACCCACCTG-CATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAAGGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAGGGGAAGCGCTTGAGACCAGACT---CGGCC-TAGGGCACACAT----CCTTCCTTC-----TGG-TTGGT--GCACTTGCCCCTGGC-TGGGCCAGCATCAGTTGGGATGGCGGGATAAAGGTCCGGAGAATGTGGCTCCCCC---TCGG--GGAGTT-TTATAACCCAGG----ATCCCATTCCGCCCGTCCCGACT-GAGGGCCGC-GC?T---CGGCCA-GGATA Discina_macrospora AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCCGGCGT--CCTCGA--CG-CCCGCGTTGTAATTTGGAGAGGCATCTT-CGGTTTGGGCG--CCAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCTT---GGCTGGCTGTCCCTCTCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGTCGGGGGACGATCAA----CGGCCCTTC-----TGG-GCCGT--GCACTCGTCCTCGGTTCGGGCCAGCATCGGTTGAGGCGGCGGGATAAAGGCCCGGGGAATGTGGCTCCTC----TCGG--GGAGTG-TTATAGCCTCGG----GCGCAATGCCGCCAGCCTCGACC-GAGGACCGC-GCTC-TTTTGCTA-GGATG Disciotis_venosa AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCTGGCGT--CTTTGG--CG-TCCGCATTGTAATTTGGAGAGGCATCTT-CGGTTTGGGCG--CCAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCTT----GCCGGCTGTCCCATTCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCTCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCC-GGGGATGATCAG----CTGTCCTTC-----TGG-GCAGT--GCACTTGTCTCTG-GTCGGGCCAGCATCGGTTGAGACGGCGGGACAAAGGCTTCGGGAACGTGGCTCCTT----TCGG--GGAGTG-TTATAGCCCGTC----GCGTAATGCCGCCAGCCTCGACC-GAGGACCGC-GCTT---CGGCTA-GGATG Fischerula_subcaulis AACGGCGAGTGAA-GCGGCAGCAGCTCAAATTTGTAAGCTGGCGTC-CCCCGA--CG-TCCGCGTTGTAATTTGGAGAGGCATCTT-CGGTTCGGGCG-GCCGGCCCCATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTACGG---GACCGGCCGACCTGTTCAT-CGTGAGGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAACTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGAGAAGCGCTTGAGACCAGACT---CGGCC-GGTGGTGATCAC---CCGACCCCTCG----TGG-GCGGT--TCACTCATCTCCG-GGCGTGCCAGCATCGGTTGGGGCGGCGGGACAAAGGCCTCGGGAACGTGGCTCCCC----TCGG--GGAGTG-TTATAACCCGGGT---GCGAAATGCCGTCAGCCTCGACC-GAGGACCGC-GCCCATCGGGCTA-GGATG Geodendron_araucarioides AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCGC--CTCTGG--TG-TCCGAGTTGTACTTTGGAGAGGCATCTT-CCGGAGGGGCC---CAGCCT-ATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTT---GGCTGGATGTTCCCTCCTG-TATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGT---CAGCC-TTTGGCAAACAA----CTATCCTTC-----TGA-ATGGT--GCACTTGTCATT-GGTTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCT-----TTAT--GGAGTG-TTATAGCCCCAG----GCGGCATACTGTCAGCCCCGACT-GTGGACCGC-GCTT---CGGCTC-GGATG Geodendron_hydrophobum AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCGC--CTCTGG--TG-TCCGAGTTGTACTTTGGAGAGGCATCTT-CCGGAGGGGCC---CAGCCT-ATGTGCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTCCTT---GGCTGGATGTTCCCTCCTG-TATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGAGT---CAGCC-TTTGGCAAACAA----CTATCCTTC-----TGG-ATGGT--GCACTTGCCATT-GGTTGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCT-----TTAT--GGAGTG-TTATAGCCCCAG----GCGGCATACTGTCAGCCCCGACC-GTGGACCGC-GCTT---CGGCTC-GGAT- Gyromitra_esculenta AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCTGGCGT--CTTTGG--CG-TCCGCGTTGTAATTTGGAGAGGCATCTT-CGGTTTGGGCG--CCAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCT---GGCTGGCTGTCCCTTTCCA-TGTGAAGTGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCCGG-GGATGATCAG----CCGTCCTTC-----TGG-GCGGT--GCACTCGTTTCCG-GCCGGGCCAGCATCGGTTGAGACGGCGGGATAAAGGCCCGGGGAATGTGGCTCCTT----TCGG--GGAGTG-TTATAGCCCCGG----GCCCAATGCCGCCAGCCTCGACC-GAGGACCGC-GCTTA-ATTGCTA-GGATG Helvella_lacunosa AACGGCGAGTGAA-GCGGCAGCAGCTCAAATTTGAAATCTGGGGC--CCTTGG--CC-CCCGAGTTGTAATTTGGAGAGGCATCTT-CTGGGGGGAGC-GCCGGCCC-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCGA---GGCAGG-TGGCCTCCTCCCATGTGGAGGGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGGC-CCGGGCAAACA---CCGCGTCCTTC-----GGG-GCCGT--GCAATTGCCTGGGCC-TGGGCCAGCATCAGTTGGTGTGGCGGGACAAAGGGGCGGGCAATGTGGCTCCCC----ACGG--GGAGTG-TTATAGGCCCGC----CCTGAATGCCGCCGACGTCGACT-GAGGACCGC-GCTT---CGGTTA-GGATG Hydnotrya_cerebriformis AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCCGGCAC--CCTCGG--TG-TCCGCGTTGTAATTTGGAGAGGCAGCTT-CGGTTAGGGCG--CCAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCT---GGCTGGCTGTCCCTTCCCA-TGTGAAGCGCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCCTGTGGATGATCAG---CCGTTCCTTC-----AGG-GCGGT--GCACTTGTCTCGG-GCCGGGCCAGCATCGGTTGAGGCGGCGGGAGAAAGGTCTCGGGAATGTGGCTCCCC----TCGG--GGAGTG-TTATAGCCCGGA----ACGCAATGCCGTCAGCCTCGACC-GAGGACCGC-GCCTTTGTG-CTA-GGATG Labyrinthomyces_varius AACGGCGAGTGAA-GCGGCAAGAGCTCAAATTTGAAATCTGGCGT--CGCAGGG-CG-TCCGAGTTGTAATTTGGAGAGGCATCTT-CGGGCGGGGCC---CAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCAC---GGCTGGGCGCCCCCGCCTG-TATGTAGTGTCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAGCC-TAGGGCAAACAT----CCTTCCTTC-----TGG-TTGGT--GCACTTGCCCCTGGC-TGGGCCAGCATCAGTTGGGACGGCGGGATAAAGGTCCGGGGAATGTGGCTCCCC----TCGG--GGAGTG-TTATAGCCCCGG----ATACCATGCCGCCCCTCCCGACT-GAGGACCGC-GCTT---CGGCTA-GGATG Leucangium_carthusianum AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCTGGCGT--CCTCGA--CG-TCCGCGTTGTAATTTGGAGAGGCACCTT-CGGTTTGGGCG--CCGGCTT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCC-----GTCGGCTGTCCCATTCCA-CGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCT-TCGGACGATCAG----CCTCCCTTC-----TGG-GCGGT--GCACTCGTCTTTG-GTCGGGCCAGCATCGGTTGAGACGGCGGGACAAGGGCTTCGGGAATGTGGCTCCTC----TCGG--GGAGTG-TTATAGCCCGTG----GTGCAATGCCGCCCGCCTCGACC-GAGGACCGC-GCTT---CGGCTA-GGATG Morchella_esculenta_AF279398 -------------------AAAAGCTCAAATTTTAAAGCTGGCAC--CTCCGG--TG-TCCGCGTTGTAATTTTGTGAGGCATCTC-CGGGTGGGGCG--CCGGCCT-AAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGCTT---GGCTGGCTGTCCCCGTCCA-TGTGAGGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT--TCGGTG-GGGAGTGATCAG----CCGTCCTTC-----TGG-GCGGT--GCACTTGCCCCCC-TCCGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCCGGGAATGTGGCTCCTC----TCGG--GGAGTG-TTATAGCCCGGG----TGA--ATGCCGCCAGCCCCGACC-GAGGACCGC-GCCT-TCGGGCTA-GGATG Morchella_esculenta_MEU42669 AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTTAAAGCTGGCAC--CTCCGG--TG-TCCGCGTTGTAATTTTGTGAGGCATCTC-CGGGTGGGGCG--CCGGCCT-AAGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTGCTT---GGCTGGCTGTCCCCGTCCA-TGTGAGGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT--TCGGTG-GGGAGTGATCAG----CCGTCCTTC-----TGG-GCGGT--GCACTTGCCCCCC-TCCGGGCCAGCATCGGTTGGGACGGCGGGATAAAGGTCCCGGGAATGTGGCTCCTC----TCGG--GGAGTG-TTATAGCCCGGG-----TG-AATGCCGCCAGCCCCGACC-GAGGACCGC-GCCT-TCGGGCTA-GGATG Neolecta_vitellina AACGGCGAGTGAA-GCGGGAACAGCTCAAATTTGGAATCTGGCGG--ATTGCATCCG-TCCGAATTGTAATTTCAAGAGGCATCTT-CGGGTTCGGCT--CAGGTAA-AAGTCCGTTGGAATACGGCATCATAGAGGGTGAGAATCCCGTCCAT---GACCTGG-GTCCCGTTCCTATGTGAAGTGTCTTCAAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGAACAAGTAGTGTGAACGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGGGACCAGAGCG--CTGCTTTTCAG-GATCAG----CAGAGCTTC-----AAGTTCTGT--GCACTC-TTGGATTGCAGGGCCAGCATCGGTTTGAACGGTTGTATAAAGGCTTGAGGAAGGTGGCTTTATCT--TCGGATGGAGTG-TTATAGACTCTT----GTGCAATGCAACCAGTTTGGACC-GAGGACTGCAGCTTTATTGCTTAAGGATG Otidea_concinna AACTGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAAACCGGCAA--CCCCAG-----CCGGCAGTGTAATTTGAAGGGACATCTT-CGGAGCTGGCG--CCGTCTT-AAGTTCTTTGGAACCGGACATCATAGAGGGTGAGAATCCCGTGCCT---GGGTGGCTGTCCCGCTCCG-TGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACTAGATT---CAGTC-GGCGGTGATCAG----CTATGCTTC-----TGC-GTGGT--GCACTTGCCGTCG-ATTGAGCCAGCATCGGTTTTGATGGCGGGATAAAGGTTTGAGGAATGTGGCTCCCCGAT-TCTGG-GGAGTG-TTATAGCCTTGA----GCGTAATGCCGCCTGTCGGGACCCGAGGACCGC-GCTT---CGGCTA-GGATG Otidea_onotica AACTGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGACGT--TTTTGA--CG-TCCGAGTTGTAATTTGGAGGGATATCTT-CGGAGCTGGCG--CTGTCCT-AAGTTCTTTGGAACCAGACATCATAGAGGGTGAGAATCCCGTGCCT---GGGTGGCTGTCCTGCTCCA-TGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGATT---CAGCC-GGCGGTCATCAG----CTACATTTC-----TAT-GTGGT--GCACTTGCCGTCG-GTTGAGCCAGCATCGGTTTTGATGGCGGGATAAAGGTTTCAGGAATGTGGCTCCTCGATTTCGA--GGAGTG-TTATAGCCTGGA----GCGCAATGCCGCCTGTCGGGACC-GAGGACCGC-GCTT---TTGCTA-GGATG Peziza_badia AACGGCGAGTGAA-GCGGCAAAAGCTCAGATTTGAAATCTGTCGCCATTTTGG--CG-GCCGAGTTGTAGTCTGTAGAGGTGTATT-CGAGTGTGGCT--TTGGCTT-AAGTTCCTTGGAACAGGGCGTCATAGAGGGTGAGAACCCCGTTAAC---GGCCTT-TGTCTTATGCTCATGTGAATCTCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAAGCTAAATACTGGCAAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGAACTCTGAACAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCACTTCCGACCAGACG---CACTT-GCAGCCGATCAA---TCTTCATTCT-----T-G-AGGGT--GCACTCGGTTGTCT-GTGGGTCAGCATCAGTTATGGCGGTGGGAAAAAGACTAAGGGAATGTGGCTCCTT----TCGG--GGAGTG-TTATAGCCTTTG----GTGCAATGCTGCCTGCTGTGACT-GAGGACCGC-GCTT---CGGTGA-GGATG Peziza_quelepidotia AACGGCGAGTGAA-GCGCCAAAAGCTCAGATTTGAAATCTGGTATCATTTTGG--TG-CCCGAGTTGTAATCTGTAGAGGAGTATT-CGGTTTTGGTC--ATGGCTT-AAGTTCCTTGGAACAGGACGTCATGGTGGGTGAGAACCCCGTTTGC---GGCCTT-TGTCTTCCAATCATGTGAATCTCCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTCCATCTAAGGCTAAATATCTGCAAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGAACTCTGAACAGAGAGTTAAATAGTACGTGAAATTGTTGAAAGGGAAGCACTTGCTACCAGACG---CACTT-GCAATTGATCAG---GCTTCATTT------TGT-AAGCT--GCACTCAGTTGTAG-GTGGGTCAGCATCAGTTATGGCGGTGGGATAAAGGCCTGGGGAATGTGGCTCTCT----TCGG--GGAGTG-TTATAGCCTCTG----GTGTAATACTGCCTGCTATGACT-GAGGATCGC-GCTT--CGGGCGA-GGATG Rhizina_undulata AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCGC--CTTCGG--CG-TCCGAGTTGTAATTTGGAGAGGCATCTT-CGGGT-GGGCG--CAGGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCAC---GGCCGGCTGTCCCCGTCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---TGACCTGGGGATGATCAG----CAGTCCTTC-----TGG-GCTGT--GCACTCGCCTCAGCGTCGGGCCAGCATCGGTTGGGACGGCAGGATAAAGGTCGCGGGAATGTGGCTCCCC----TCGG--GGAGTG-TTATAGCCCGTG----GCGCAATGCTGCCTGCCCCGACC-GAGGACCGC-GCTT---CGGCTA-GGATG Smardea_amethystina AACTGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCCCGT?TCCGG--CGGCCCGAGTTGTAATTTGGAGGGGCATCTT-CGGGGTGGGCG--CCGTCCC-AAGTTCCTCGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGTCT---GGTCGGCTGCCCCGCTCCA-TGTGAAGTGTCTCCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACTCGTCGGCC-GGCAACCATCG------TGCGCTTC-----TGC-GCCGT--GCAATTGCCGACC-GGCGGGCCAGCATCGGTTCCTGCGGCGGGAAAAAGGCTGCGGCAATGTGGCTCCTC----TCGG--GGAGTGGTTATAGGCTCGA----GCGTCATGCCGCCTGTGGGGACC-GAGGACCGC-GCTT---CGGCTA-GGATG Taphrina_deformans AACGGCGAGCGAA-GCAGGCATAGCTCAAATTTGTAATCTGGCGC--CTTTGG--CG-TCCGAGTTGTATTTTCTAGAAGCGAGTT-CGGTG-ACAGCT-CCTACCC-AAGTCCGTTGGAACGCGGCGTCATGGAGGGTGAGAATCCCGTGAAT---GGTAGGATGTCTGCTGCT-ATGTGAACCGCCTTCGAAGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGA-GACCGATAGCGAACAAGTAGAGTGATCGAAAGATGAAAAGAACTTTGAAAAGAGAGTTAAACAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGA-----CTTCCTGTCTG-GACTGT----CCTTGCTTT-----TGCTTGGGTCAACAGTC-CAGGCGTGGAGG-CCAGCATCAGTTTTGACGGCCGGATAAAGGCCTTGGGAAGGTAGCTCCTC----TCGG--GGAGTG-TTATAGCCCAGG----GTGTAATACGGCCAGTTGGGACT-GAGGACCGC-GGCTTTGC--CTA-GGATG Tuber_californicum AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGACAT--CCTTGG--TG-TCCGAATTGTACTTTGGAGAGGCATCTT-CTGGAGGGGCC---CAGCCT-ATGTGCCTTGGAACAGGACGTC?TAGA?GGTGAGAATCCCGTCCTT---GGCTGGATGTTCCCTCCTG-TATGTAGTGTCT?CTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTTAAGCTAAATATTGGCGAGA-GACCGATTGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAATAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGC---CCGCC-TTTGGCAAACAA----CTGTCCTTT-----TGG-GTGGT--GCACTTGTCATTTGGTAGGTTCAGCATCGGTTGGGACGGCAGGATAAAGGCCCAGGGAATGTGACTCCT-----CTAT--GGAGTG-TTATAGCCCCAG----GCGGCATGCTGTCAGCCTCGACC-GTGGACCGC-GCTT---TGGCTC-GGATG Tuber_gibbosum AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTTAAATCTGACGC--CCACAAG-CG-TTCGAGTTGTACTTTGGAGAGGCATCTT-CGTAAGGGGTC---CAGCCT-ATGTTCCTTGGAACAGGGCGTCATAGAGGGTGAGAATCCCGTTCAT---GGCTGGATACTCCTTGTAT-TATGTAGTGTCTTCAACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGATCAGAGT---CAGTC-GATTATAAACAA----CTTTCCTTC-----TGG-ATGGT--GCACTTATTATT-GATTGGGCCAGCATCAGTTGGGACGGCAGGATAAAGGCCATGGGAATGTGACTCCA-----TTTT--GGAGTG-TTATAGCCCCTG----GTGCCATGCTGTCTGCCCTGACT-GTGGACCGC-GCTT---CGGCTT-GGATG Tuber_melanosporum AACGGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCAC--CTTTGG--TG-TCCGAATTGTAATTTGGAGAGGCAACTT-CGGGTAGGACC---CAGTCT-ATGTTCCTTGGAACAGGACGTCATAGAGGGTGAGAATCCCGTTCAT---GACTGGATGTTCCTACTAG-TACGTAGTGCCTTCTACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTCAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAGCC-TTTGGTAAACAA----GTGTCCTTC-----TGG-GCATT--GCACTTGCC-TCGGGTTGGGCCAGTATCAGTTAGGATGGTAGGAGAAAGGCCAGGAGAATGTGACTCCA-----TTTT--GGAGTG-TTATAGATCCTG----GTGTCATGCTACCTGTCCTGACT-GTGGACCGC-GCAT---TAGCTA-GGATA Underwoodia_columnaris AACGGCGAGTGAA-GCGGCATGAGCTCAAATTTTAAATCTAGTCTCCGTCTGG--TGGCCCGAGTTGTAATTTGGAGAGGCACCTT-CGGGGAGGGCG--CCGGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCCC---GGCCGGCCGTCCCACCCCC-TGTGAAGGGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGTGGTAAATTTCATCTAAAGCTAAATACTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACC---CGGCCCG-TGGCCATCGT----CCCGCCTTC-----TGG-TGGGA--GCGCTCGCCTCGG-GTCGGGCCAGCATCAGTTGAGGTGGTGGGATAAAGTCCCGAGAAATGTGGCTCCCT----ACGG--GGAGTG-TTATAGTCCCGGGAACATCCAATGCCACCCTCCTCGACT-GAGGACCGC-GCTC---CGGCTA-GGATG Verpa_conica AACGGCGAGTGAA-GCGGCAACAGCTCAAATTTTAAAGCTGGCGT--CTTCGG--CG-TCCGCATTGTAATTTGGAGAGGCATCTT-CGGTTTGGGCG--CCAGCCT-ATGTTCCTTGGAACAGGACGTCACAGAGGGTGAGAATCCCGTGCTT----GCTGGCTGTCCCATTCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGTGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGGCT-GGTGATGATCAG----CTGTCCTTC-----TGG-GCAGT--GCACTTGTCGCCG-GTCGGGCCAGCATCGGTTGAGACGGCGGGATAAAGATCTCGGGAATGTGGCTCCTT----TCGG--GGAGTG-TTATAGCCCGGG----ATGCAATGCCGCCAGCCTCGACC-GAGGACCGC-GCTT---CGGCTA-GGATG Wilcoxina_mikolea AACTGCGAGTGAA-GCGGCAAAAGCTCAAATTTGAAATCTGGCGT--CTTTGG--CG-TCCGAATTGTAATTTGGAGAGGCATCTT-CGGTGATGGCG--CTGTCCT-AAGTTCCTTGGAACAGGATGACATAGAGGGTGAGATCCCCGTGCCT---GGGTGGCTGTCCATCTCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGATT-TGTGGTGATCAG----CTGTGCTTC-----TGT-ACAGT--GCACTTGCCACAG-ATTGGGCCAGCATCGGTTCTGACGGTGGGATAAAAGGGTGAGGAATGTGGCTTCCT----TCGG--GGAGTG-TTATAGCTTCGC----TCACAATGCCACCAGTTGGGACC-GAGGACCGC-GCTT---TGGCTA-GGATG Wilcoxina_rehmii ------------------CAAAAGCTCAAATTTGAAATCTGGCGT--CTCTGA--CG-TCCGAATTGTAATTTGGAGAGGCAACTT-CGGTGATGGCG--CCGTCCT-AAGTTCCTTGGAACAGGATGACACAGAGGGTGAGATCCCCGTACCT---GGGTGGCTGTCCATCGCCA-TGTGAAGTGTCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCAAAATGGGTGGTAAATTTCATCTAAAGCTAAATATTGGCGAGA-GACCGAT?GCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAAGAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CGATT-CCTGGTGATCAG----CTGTGCTTC-----TGTTGCAGTT-GCACTTGCCATGG-ATTGGGCCAG-------------GGTGGGATAAAAGGTTAAGGAATGTAGCTTCCT----TCGGG-GGAGTG-TTATAGC?TCAG----CCATAATGCCACCAGTTGGGACC-GAGGACCGC-GCTC---CGGCTA-GGATG Wynnella_silvicola AACGGCGAGTGAA-GCGGCAGAAGCTCAAATTTGAAATCTGGGGT--CGCCGA--CC-CCCGAGTTGTAATTTCGAGAGGCGACTTCCGGGGGGGGTC--CCGGCAC-GTTTTCCTTGGAACAGGACGTCAGAGAGGGTGAGAATCCCGTTCACTTCCGCCCGC?CCCCCCCCCTC-TGTGAAGCGCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCCAAGTGGGTGGTAAATTTCATCTAAGGCTAAATACTGGCGGGA-GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGAAAATAGAGTTAAAAAGTACGTGAAATTGTTGAAAGGGAAGCGCTTGAGACCAGACT---CAGGG-CGGGGCAAACAG----CCTTGCCCCCAAC-CGG-GCGGC--GCACTTGCCCCGACCCTGGGCCAGCATCAGTTGTGGTGGTGGGACAAAGGCGCCGGGAATGTGCCTCCCCC---TCGGG-GGAGCG-TTATAGCCCGAC----GTCGGATGCCGCCGACCACGACT-GAGGACCGC-GCTT---CGGCAA-GGATG ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Geodendron_LSU) = N: 1-575; CODONPOSSET CodonPositions (CHARACTERS = Geodendron_LSU) = N: 1-575; END; [ The following blocks are output data for analysis step 1993 ] BEGIN TREES; TITLE Tb6768; LINK TAXA = TaxaForAnalysisStep1993; TREE Fig._18 = [&R] ((Taphrina_deformans,Neolecta_vitellina),((Peziza_quelepidotia,(Peziza_badia,Cazia_flexiascus)),((Smardea_amethystina,((Aleuria_aurantiaca,(Wilcoxina_rehmii,Wilcoxina_mikolea)),(Otidea_onotica,Otidea_concinna))),(Rhizina_undulata,(((Morchella_esculenta_AF279398,Morchella_esculenta_MEU42669),(Hydnotrya_cerebriformis,(Gyromitra_esculenta,Discina_macrospora),((Leucangium_carthusianum,Fischerula_subcaulis),(Verpa_conica,Disciotis_venosa)))),(Underwoodia_columnaris,(((Wynnella_silvicola,Helvella_lacunosa),(Barssia_oregonensis,Balsamia_magnata)),(((Labyrinthomyces_varius,Dingleya_verrucosa),(Choiromyces_alveolatus,Choiromyces_venosus)),(Tuber_melanosporum,(Tuber_gibbosum,(Geodendron_hydrophobum,(Geodendron_araucarioides,Tuber_californicum)))))))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1708] END;