#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 12, 2024; 16:44 GMT TreeBASE (cc) 1994-2008 Study reference: Urban A., Neuner-plattner I., Krisai-greilhuber I., & Haselwandter K. 2004. Geodendron, a new form genus to accomodate anamorphs linked to the genus Tuber. Molecular Ecology, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1111] [ The following blocks are input data for analysis step 1994 ] BEGIN TAXA; TITLE TaxaForAnalysisStep1994; DIMENSIONS NTAX=24; TAXLABELS Geodendron_araucarioides_Y305 Geodendron_araucarioides_Y86_A Geodendron_araucarioides_Y90B_AY212882 Geodendron_hydrophobum Tuber_borchii_AF003920 Tuber_borchii_AF106890 Tuber_borchii_AF250291 Tuber_borchii_AJ557535 Tuber_borchii_AJ557536 Tuber_borchii_AJ557538 Tuber_dryophilum Tuber_foetidum Tuber_indicum Tuber_maculatum_AF003919 Tuber_maculatum_AF106889 Tuber_magnatum_AF106888 Tuber_melanosporum Tuber_oligospermum_AF106891 Tuber_oligospermum_AJ557540 Tuber_oligospermum_AJ557541 Tuber_oligospermum_AJ557542 Tuber_puberulum Tuber_rapaeodorum Tuber_rufum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M790] TITLE Geodendron_nrITS; LINK TAXA = TaxaForAnalysisStep1994; DIMENSIONS NCHAR=555; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Geodendron_araucarioides_Y305 CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAAGACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCCG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Geodendron_araucarioides_Y86_A CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCGATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAC-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Geodendron_araucarioides_Y90B_AY212882 CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCGATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAC-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Geodendron_hydrophobum CCAAACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCATTTGGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTT-AAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAATGTGGTATTGGTAGAAGTGGGTAGT---GCTAAAAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCGGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTCTCCGGACCCCC-ATTTAGTCTAAATAAGAG Tuber_borchii_AF003920 CAAAACACATTCCTGTGTAACTCTCCCTCATT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCGTAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATGGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGAGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-TGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTACCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_borchii_AF106890 CAAAACACATTCCTGTGTA-CTCTCCCTCATT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCGTAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATGGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGAGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-TGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTACCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_borchii_AF250291 CAAAACACATTCCTGTGTA-CTCTCCCTCATT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCGTAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATGGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGAGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-TGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTACCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_borchii_AJ557535 CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_borchii_AJ557536 CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAACACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCTG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_borchii_AJ557538 CAAAACACCTTCCTGTGTA-CTCTCTCCCTTT-------------------------------------------------------------------------------------------AA-ACTTTTGAACCAATTAGTAGTCTGAGAAGG---CCATGTG-CCATAAAATTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAAACCCCCTCACAG-ATAATGTGGTATTGGTAGAAGTGGATAGT---ACTAAGACTACTTT------GTCTGACTCTACTGAAATGAATAGGCCAGGGAAGTTGACCGTGGTAATAGACTCCAGGAGTGT-TTTAAAA-CGCTAAATTAGTCTTCT-CCAAGTCATGTTCCG-AGCTATCGGACCCCCCATTTAGTCCAAACTAGAG Tuber_dryophilum ----------------------TCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCATTTCGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTTAAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAATGTGGTATTGGTAGAAGTGGGTAGT---GCTAAGAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCAGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTCTCCGGACCCCC-ATTTAGTCTAAATAAGAG Tuber_foetidum TAAAACCCATCCATGAGTACTCTGCCATGTTGCTTCCCCAGGCCAGTGGCCACTGCTGCCAG-CCAGGC------CGTTATTCGGTCACTT-GGTTGAGGTGCCTGGGGAAGGGCCAATTAGTAA-ACTTTACATTAACTTA-CTGTCTGAGAAGG---CCATGTG-CCGTAATCTTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-AGATCACCA-AGAGTGTGGTATTGGCAGAAGTGGGTGGG---ACTATAAGGGACCC-------TTCCACTCTGCTGGAATGAATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCAGAGTAT-TTTGAAA-TGCTAAATTAGTTTGAA-GCTGATCGGAACCCA-GGCCATTAGACCCCC-ATCCTGTGTAAAGCAGTA Tuber_indicum CAAA---CCTCCCTGCGTATCACTCCATGTTGCTTCCACGGGT-------------TAA--GCCA--------------CTGTGCTGGTACCTGTGGGAGATCTCC---------ACATTAACAG--AGTATTTGATTAC--GCCGTCTGAGCTGG---CCAT-GTGTCAGATTTACTGAA-GTA---AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTACACACCTTATCACAACATT-TGTGGTCTTGGCAGGAGTGAATTGCTAGTCTATGAAAATATTCCAGCTGTC-CACCATGCTGAAAATTATGGGAAGGTTACCAGGCGTG-AACAACAGACTTTGTAAAGG--GTTGCAGGACCTGTATCAGTCAACAGTCATGTCTGGTCCT-TAC-CTTAGGGACCCCCATCCTAG-ATGAACTAT- Tuber_maculatum_AF003919 TAAAACACATTTATGCGTATTCTCCCATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAG-CCATGC------CGTTTTTCGGTTACAT-GGTTGAGGTGCTTGGGGAAGGGCTAATTATCAA-ACTTTACTTCACCTTA-TTGTCTGAGAAGG---CCATGTG-CCGTAATCTTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCGCAAAAACCCAGATCACCT-AGAGTGTGGTATTGGCAGAAGTGGCCGGG---GCTATCAGTGCTGC-------TGCCACTCTGCTGGAATGAATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCACAGTAT-TTTGAAA-TGCTAAATTAGTTTGAA-GCTGATCGGAACCTA-AGCCATTTGACCCCC-ATCCTGCGTAAAG----- Tuber_maculatum_AF106889 TAAAACACATTTATGCGTATCCTCCCATGTTGCTTTCCCAGGCCAGCGGCCACTGCTGCCAG-CCATGC------CGTTTTTCGGTTACATAGGTTGAGGTGCTTGGGGAAGGGCTAATTATCAA-ACTTTACTTCACCTTA-TCGTCTGAGAAGG---CCATGTG-CCGTAATCTTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCGCAAAAACCCAGATCACCT-AGAGTGTGGTATTGGCAGAAGTGGTCGGG---GCTATCAGTGCTGC-------TGCCACTCTGCTGGAATGAATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCACAGTAT-TTTGAAA-TGCTAAATTAGTTTGAA-GCTGATCGGAACCTA-AGCCATTTGACCCCC-ATCCTGCGTAAAGCAGTA Tuber_magnatum_AF106888 CTGAATATCTCC-TGTGTACCATGCCATGTTGCTTCCCCAGGG-------------TCACGGTCA--------------CTGTGCCGC--CTGGGAGGAGGGCACA---------GTCCCAAAAACTACTGTCATCCTACCAGCAGTCTGAGAAAGGGCCCATCAGGCCTGACAAACTTAA-ACAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAACTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTCTGGCATTCCTCAGGGCATGCCTGTTTGAGCGTCACTGAAAACCCACTCACGGAATCACGTGGTGCTGATGGAGGTGGCTTGGTACCGCAGCGGCGGTGGCCGG--GTC-CACCCTGTCGAATTTCATTGGGAGGATGACGGACCCCCGGCTGCTGACTTTGTAGACATCGCCTTGAAATGCGTGCTAGTTGCCAGTCAGGCCCGGTCCTGCACGCTTGAGGATCCCTGCCATGGGATCCACTGTC Tuber_melanosporum CAAA---CCTCTCTGCGTATCACTCCATGTTGCTTCCACAGGT-------------TAA--GTGA--------------CCATGCTGGCACCTGTGGGAGATCTCT---------ATGTTAACGG--AGTATTTGATTGT--GCTGTCTGAGCTGG---CCAT-GTGTCAGATTTAGTAAA-GTA---AAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAGGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTACACACCTTATCACAAAGTT-TGTGGTCTTGGCAGGAGTGAATTGCTAGTCTATTAAAATGTTCCAGCTGTA-CACTCTGCTAAAAATTATGAGAAGGTTACCAGGCATG-AACGACCGACTTTATAAACG--GTTATAAGACCTGGATCAGTCACAAGTCTTGTCTGGTCCT-TAC-CTTAAGGACCCCCATCCTAG-ATGAACTAT- Tuber_oligospermum_AF106891 CAAAACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCATTTCGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTTTAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAACGTGGTATTGGTAGAAGTGGGTAGT---GCTAAAAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCAGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTTCCCGGACCCCCCATTTAGTCTAAATAAGAG Tuber_oligospermum_AJ557540 CAAAACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCATTTCGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTTAAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAATGTGGTATTGGTAGAAGTGGGTAGT---GCTAAGAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCAGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTCTCCGGACCCCC-ATTTAGTCTAAATAAGAG Tuber_oligospermum_AJ557541 CATAACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCTTTTCGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTTTAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAATGTGGTATTGGTAGAAGTGGGTAGT---GCTAAGAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCAGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTCTCTGGACCCCC-ATTTAGTCTAAATAAGAG Tuber_oligospermum_AJ557542 CAAAACACATCCATGTGTACACTCCCATGTTGCTTCCCCAGATCAGTGGCCACTGCTGCCAGCCCTGCC------CTTCATGGCATTTCGG--GTTGAGGTGTCTGGGGAAGGGTCCAATATCAA-ACTTTTGAACAAATCAGTTGTCTGAGAAGG---CCATCCGCCGCAAATTTTTAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCACTAAAACC-GCCTCACAT-ATAATGTGGTATTGGTAGAAGTGGGTAGT---GCTAAAAGCACCTT------GTCCTACTCTACTGAAATGAATAGGCCAGAAAAGTGAACCATGGTAGTAGACTCTCAGAGTGT-TTTAATA-TACTAAACTAGTCTTAG-CCAGGTTGGAATCTG-AGTTCCCGGACCCCC-ATTTAGTCTAAATAAGAG Tuber_puberulum GTAAACACATTCATGTGTACCCTTCCATGTTGCTTCCCCAGACCAGTGGCCACTGCTGCCAGTCCAGTT------CATAATTATGGCTTCTGGGTTGAGGTGTTTGGGGAAGGACCCATTATCAA-ACTTTTAAACAAATTAGTTGTCTGAGAGGG---CCATGTGTCCGCAATCTTTAAAATATATTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCATTAAAAACCATCTCACAT-ATACTGTGGTGTTGGTAGAAGTGGGTAGT---ACTGATAGTACTTT------ATCCTACTCCACCAAAATCAATAGGTCAGAAATGTGGACCCTGGTAACAGACTCTCAGAGTGT-TTTAAAAATGCTAAACTAGTCTTAA-CCAGGTCGGAATCTG-AGCTAGAGGGACCCC--CCTTGAG---------- Tuber_rapaeodorum TAAAACACATTTATGCGTATCCTCCCATGTTGCTTTCCCAGGCCAGTGGCCACTGCTGCCAG-CCATGC------CGTTTTTCGGTTACAT-GGTTGAGGTGCTTGGGGAAGGGCTAATTATCAA-ACTTTACTTCACCTTA-TTGTCTGAGAAGG---CCATGTG-CCGTAATCTTTAAA-CATGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCTTTGGTATTCCTTAGGGCATGCCTGTTCGAGCGTCGCAAAAACCCAGATCACCT-AGAGTGTGGTATTGGCAGAAGTGGCCGGG---GCTATCAGCGCTGC-------TGCCACTCTGCTGGAATGAATAGGCTGGAAAAGTAGATCATAGCAACAGACTTTCACAGTAT-TTTGAAA-TGCTAAATTAGTTTGAA-GCTGATCGGAACCTA-AGCCATTTGACCCCCCATCCTGCGTAAAGCAGTA Tuber_rufum CAAA--CCCTCTCTGTGTACCAATCCATGTTGCTTTCCCAGGTGGTTGGTTTCAGTTGATGTCCAATCCTGCATGCTAGCTGAGTTAATATCACTAAGTGGGTCCCTGGGAAAGGGCCTTACCAATGCAAACATTTGAATCAGCCGTCTGAGTTGG--CCCA--GTGCCGTATT-ATTGAA-TAAGTTAAAACTTTCAACAACGGATCTCTTGGCTCTCGCATCGATGAAGAACGCAGCGAAATGCGATAAGTAATGTGAATTGCAGAATTCAGTGAATCATCGAATCTTTGAACGCACATTGCGCCCCTTGGCATTCCTTGGGGCATGCCTGTTCGAGCGTCACTGCAAACCCGCTCATAAATAT-TATGGTAATGATGGAAGTGAAGTG--AGGACAGTAATGTGCCTCGG----T-CACCCCATTGAAATGTATTGGCAGGACAATTAACCTC-TGCAATGGACTTAGTAACTG--TTTTGAAGACATCAATCAGTCAATTGCGAGGTTCTGGCCT-GGCCCCGATGGATTTCCATCAAAG-ATGAACTCT- ; END; BEGIN CODONS; CODONPOSSET * CodonPositions (CHARACTERS = Geodendron_nrITS) = N: 1-555; CODONPOSSET CodonPositions (CHARACTERS = Geodendron_nrITS) = N: 1-555; END; [ The following blocks are output data for analysis step 1994 ] BEGIN TREES; TITLE Tb6769; LINK TAXA = TaxaForAnalysisStep1994; TREE Fig._19 = [&R] (Tuber_rufum,(Tuber_magnatum_AF106888,(Tuber_melanosporum,Tuber_indicum),((Tuber_foetidum,(Tuber_rapaeodorum,(Tuber_maculatum_AF003919,Tuber_maculatum_AF106889))),(Tuber_puberulum,(((Geodendron_hydrophobum,(Tuber_oligospermum_AJ557541,(Tuber_oligospermum_AJ557540,Tuber_dryophilum))),(Tuber_oligospermum_AJ557542,Tuber_oligospermum_AF106891)),((Tuber_borchii_AF003920,Tuber_borchii_AF106890,Tuber_borchii_AF250291),(Tuber_borchii_AJ557535,Tuber_borchii_AJ557536,(Geodendron_araucarioides_Y86_A,Geodendron_araucarioides_Y90B_AY212882),(Geodendron_araucarioides_Y305,Tuber_borchii_AJ557538)))))))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr1709] END;