#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 11, 2024; 5:34 GMT TreeBASE (cc) 1994-2008 Study reference: Meerow A., & Van der werff H. 2004. Pucara (Amaryllidaceae) reduced to synonomy with Stenomesson on the basis of nuclear and plastid DNA spacer sequences, and a new related species of Stenomesson. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1130] [ The following blocks are input data for analysis step 2036 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2036; DIMENSIONS NTAX=18; TAXLABELS Chlidanthus_fragrans Clinanthus_humilis Clinanthus_incarnatus Clinanthus_mirabilis Eucharis_castelnaeana Eucharis_formosa Eucrosia_dodsonii Eustephia_darwinii Hymenocallis_chiapasiana Hymenocallis_glauca Hymenocallis_latifolia Hymenocallis_tubiflora Ismene_vargasii Pucara_leucantha Stenomesson_aurantiacum Stenomesson_chloranthum Stenomesson_latifolium Stenomesson_miniatum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2403] TITLE 'atpB-rbcL spacer'; LINK TAXA = TaxaForAnalysisStep2036; DIMENSIONS NCHAR=1276; FORMAT DATATYPE=DNA SYMBOLS= "A C G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chlidanthus_fragrans ????AATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTT-GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTAGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTT-ATTTCTTTTATTTTCTTTTTAACTAACTATAATATATA---------------------------------TA----GTTAGTTATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTAT--------------------------C-TA----TAAAT------------------ATATA----------------------------GAAAATTTT-TCTCTATAT--AACTATATAGATAGTTAGTATAACTATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACTTATGTCACCACAAACAGAGACTAAAGC Clinanthus_humilis ????????????CGATGCGCCCTACGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-T---GATTGGAATAGTATAGTATGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GT-CTTT-ATTTT-CTTTTATTTT---------CTTT--------CTATATATAT--------AG------------------------TTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTATATA-----------------------CTTATATATAAAT-ATAAA-----------TATATA----------------------------TAAAATTTT-TCTCTATAT--AAC---------------------TAACTATCTAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTTTT--GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACTTATGTCACCACAAACA??????????? Clinanthus_incarnatus ??????????CCCCTTGCGCCCTA-GTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTATAGTATGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATGAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGCCGA------------TCTCGTTGG-CTGCT-GTTCTTTTATTTT-CTTT---------------------------CTATATATAT--------AG------------------------TTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATG-----GAACTTATATA-----------------------CTTATATATAAAT-ATAAA-----------TATATA----------------------------TAAAATTTT-TCTCTATAT--AAC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCC-----TTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGCTCAATTAGAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTTTT--GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAGGTTGTAGGG??????????????????????????????????? Clinanthus_mirabilis ?????????????????????????GTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTAT-----GGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATGAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTTC-TATATAT------------------CTATATATAT--------AG------------------------TTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATA-------------------------------------------------------------------------------------------------------------------------------AC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAAAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATG-ATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAATAATAATATTAGTTGAATATTTTTTTT----GAAAGAGGTTT-GTCTCAGGCTTCATTCACGCATGTTCCCATATGGA--GTAGACCTTGTTGTTGTGCGTATT????????????????????????????????????????????????????????? Eucharis_castelnaeana ??????????????????????TAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCAGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTTTGATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAAT-------------TAAAGAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTAAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTCCGAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCTGGT-CTTT-ATTTT-CTTT-ATTTTGATTTT---CTTTATA------TTTGATTTTCTTTATACTTTATTTATACTTTATATATAACTAATTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTATATAT------------------------------TAA-T-ATAT----------------------------------------ATAAAATAACATTATATCTCTCTATATAACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTCAAAAAAAAAA-TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACTTATGTCACC?????????????????? Eucharis_formosa ??????????????????????????????????TTCAAGTGTGGAAACCGCAGGACCAGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTTTGATTGGAATAGTA-----TGGCCCATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAATTAATTAAATAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTAAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGGGAAATTCTAACTC-GAACTCAATTTATGATTCCATTATTGC-GA------------TCTCGTTGG-CTGCTGGT-CTTT-ATTTT-CTTT-ATTTTTATTTT---CCTTTAT----A----------------------------CTTTATATATAACTAATTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAGCTTATATATAAA---------------------------TA--T-ATAT-----------------------------------------TAAA-TAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTCAAAAAAAAAA-TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACTGTGATTCGTTGATAA------TATTAGTTGAATATCTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGC-ACTTATGTC????????????????????? Eucrosia_dodsonii ??????????????????????????TGTTGTTGTAGAAGTGTGGAAACCGCAGGACCAGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTTTGATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGG-AA------------TCTCGTTGG-CTGCT-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGATAGTTAGTT--TA-ACCTATATAGAAAGTTAGCGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTAATTTCACATCTAGGGTTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTCAAAAAAAAAA-TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGGGCCTTTTTTGT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGT-AGAA??????????????????????????????????????????????????????????? Eustephia_darwinii ????AATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTTGTTT-GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTTTCAAAAGATCAAGTAGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCCTT-ATTTT-CTTTT---------ATTTTCTTTATAACTA----------------------------------------------TA----GTTAGTTATATATA----------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTAT--------------------------C-TA----TAAAT------------------ATATA----------------------------GAAAATTTT-TATCTATAT--AAC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAGTGGCTCAATTATCAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTTTT----AAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACTTATGTCACCACAAACAGAGA??????? Hymenocallis_chiapasiana ???????????????????CCCTATGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAATAAAGTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAAGAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTGGTTAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTGGTTGGGCTGCT-GTTCTTT-ATTTT--------------------CTTTATA----TATTTATATATATATATATAG-------------------------TA----GTTATATATATAAAAA----------------------------------TATATAAAGTATAAAGATAAGTTTTCTATATATATA-----GAACTTATATCCTTATTATATCTTTTTATTATATCTTATATATAAAT-ATATA-----------ATATATATATA-----------------------TAAAATTTT-TCTCTATAT--AAC---------------------TATATGGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATA{AG}CGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GGAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATAT-------------------TGTGATAATTCTTAATTCATGAG---G???????????????????????????????????????? Hymenocallis_glauca ????????????????GCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCAGAAGTAGTAGGATTGGTTTTCATAATAAATAAAGTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GGTCTTT-ATTTTCCTTTTATTTT---------CTTTATA----A-TTTATATA---------AG------------------------GTAA---GTTATATATACTATTATTAAAGTATATAAAGTATGGAAAGAATAAAGGAATATATAGGATATAAAG-------------------------GAACC--------------------------------------------------------------------------------------------------TTTT-TCTCTATAT--AAC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTAAACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTTTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGGTCAATTATAAATTTGAAAAACCAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTTGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTTTTT-GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACCTATGTCACCACAAACAGAGACTAAAGC Hymenocallis_latifolia ???????????????TGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAATAAAGTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGGGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-G{GT}TCTTT-ATTTT-CTTTTATTTT---------CTTTATA----TATTTATAT----------AG------------------------TTAGTTAGTTATATATATAAAA-----------------------------------TATATAAAGTATAAAGATAAGTTATATTATATATATATATGGAACTTATAT------------------------CTTATATATTATA-TAATA-----------TATATTTATATATTTAATTATTTAATTTTTTAATTTAA-TTTT-TCTCTATAT--AAC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCAAAA-------TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGGG-ACCTATGTC????????????????????? Hymenocallis_tubiflora ????????????????GCGCGCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAATAAAGTGAAATATGTCGAATTTTTT-TT--GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTTTATTTT---------CTTTATA----TATTTATAT--A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATAAAATTTT-TCTCTATAT--AAC---------------------TATATAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTGAGATTCAAAA-------TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTTT---GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTGAATTCATGAG-TTGTAGGGAGGG-ACCTATGTCACCG????????????????? Ismene_vargasii ????AATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAATAAAGTGAAATATGTCGAATTTTTT-T---GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTCAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAATGTAATGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCATTTCTCTATCATTATAGAAAATACCATCTAGACTAGATAAAATATGTGGAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTT-------------------ATA----TATTTATA----------TAG------------------------TTA----GTTATATATATAAAGTATAAAG-------AG-------------------TATATAAAGTATAAAGATAAGTT--CTATATATATATA---GAACTTATAT------------------------CTTATATATAAAT-ATATA-----------------------------------------TAAAGAAAATTTT-TCTCTATAT--AAC---------------------TATATAGAGAGTTAGTGCCTATTTTTGGTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTC-AGGGGGAATTTTTCTTAGTATTTCGATTTTTAGATTCCAAA-------TAAGAAATGGCTCGTTTAAAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATCCCATAATGATGTATTTGGTGAATCCAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAT------TTTTAGTTGAATATTTTTTTTTTTT---AGATTTTTTCTAAAAGGTTTCATTCACGCCTAATC-CATATCCGTGTTAACCCTTGTTGTTGT???????????????????????????????????????????????????????????????? Pucara_leucantha ?????ATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTTTGATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GC-CTTT-ATTTT-CTTT-ATTTTTATTTT---CTTTATA---------------------------------CTTTATATATATATAATTA----GTTATATATA--------------------------------------------TAATATATAA-T-TA-GTTATATATATAAAG---------TATA--AGTATAT------------------------------A-TAAAA-----------TATAT---------------AAATATATATAAAATAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTAAAAAAAAAA--TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTG-GAGAATTCTTAATTCATGAG-TTGTAGGGAGG-GACTTATG-CACCACAAACAGAGA??????? Stenomesson_aurantiacum CAATAATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTT-GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTT-ATTTTTATTTT---CTTTATA---------------------------------CTTTATATATATATAATTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTATATA-------------------------------TAAATAATAAA-----------TATAT-----------------------ATAAAATAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCAAGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTCAAAAAAAAAAA-AAGAAATGGCTCAATTATCAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGG--ACTTATGTCACCAC???????????????? Stenomesson_chloranthum ????AATTTGAGCGATGCGCCCTAGGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTT-GATTGGAATAGTA-----TGGTACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTT-ATTTTTATTTT---CTTTATA---------------------------------CTTTATATATATATAATTA----GTTATATATA--------------------------------------------TAAAGTATAAGTATAAGTT--CTATATATATA-----GAACTTATA-------------------------CTTATATATAAAT-ATATATAAAATAAAAT--------------------AAATATATATAAAATAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTAAAAAAAAAA--TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGGGAGG-GACTTATG-CACCAC???????????????? Stenomesson_latifolium ???????????????????CC-TACGTTTTTTTCTTCAAGTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTT-GATTGGAATAGTA-----TGGTACATAGTACCGAATC-AAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GATTGCGATTGCGATCTCGTTGG-CTGCT-GT-CTTT-ATTTT-CTTT-ATTTTTATTTC---CTTTATA---------------------------------CTTTATATATATATAATTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTATA-------------------------CTTATATATAAAT-ATAT----------------------------------------ATAAAATAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGTCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCTATTTTTGGATTCAAAAAAAAA--TAAGAAATGGCTCAATTATAAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTGTGAGAATTCTTAATTCATGAG-TTGTAGTCACCGCACTTATG-CACC?????????????????? Stenomesson_miniatum ??????????????????GCC-CTGGTTTTTTTCTTCA-GTGTGGAAACCGCAGGACCGGAAGTAGTAGGATTGGTTTTCATAATAAA----GTGAAATATGTCGAATTTTTT-TTT-GATTGGAATAGTA-----TGGGACATAGTACCGAATCGAAAATAAATGTCCGATAGCAAGTTGATTGGTTAATTAAA---------TAA-GAAATAAATGGGAATTAGCACTCGATTTAGTTGGTACCACCCAACCGAATCAAATTCAATCGTTTACTCATTTAA-----TGAGTCAATTTTCAAGTTCAACCAATTCATTCTTTTTT-CAAAAGATCAAGTCGATGAATAAGAATTG-TGAGTAAGTGAAGTGTGTTTCGTTTCTCTATCATTATAGAAAATACCATCTAGACTAGATTAAATCTGTGAAATTCTAACTC-GAACTCAATTTATGATTC-ATTATTGC-GA------------TCTCGTTGG-CTGCT-GTTCTTT-ATTTT-CTTT-ATTTTTATTTT---CTTTATA---------------------------------CTTTATATATATATAATTA----GTTATATATA--------------------------------------------TAAAGTATAAAGATAAGTT--CTATATATATA-----GAACTTATA-------------------------------------T-ATAAA-----------TATAT-----------------------ATAAAATAAAATTTT-TCTCTATAT--AACTAGATAGATAGTTAGTATAACTAACTAGATAGTTAGTGCCTATTTTTGTTTTATACCCCTTCCCTTTCATGGATGAATTATGCCTATTTTCACATCTAGGATTTACATATACAACATATATCACTGTCAAGGGGGAATTTTTCTTAGTATTTCGATTTTTGGATTCAAAAAAAAAAATAAGAAATGGCTCAATTATCAATTTGAAAAACGAGGATTGGGTTGCGCCATATATATCAAAGAGTATACAATAATGATGTATTTGGTGAATCAAATGCATGGTCTAATAACGAACT-TAATTCGTTGATAA------TATTAGTTGAATATTTTTTTT----GAAAGATTTTT-GTCAAAGGTTTCATTCACGCCTAATC-CATATCGA--GTAGACCTTGTTGTTG-GAGAATTCTTAATTCA-GAG-TTGTAGGGAGGG-ACTTATGTCACCAC???????????????? ; END; [ The following blocks are output data for analysis step 2036 ] BEGIN TREES; TITLE Tb6811; LINK TAXA = TaxaForAnalysisStep2036; TREE Fig.1 = [&R] (Eustephia_darwinii,(Chlidanthus_fragrans,((((Clinanthus_mirabilis,Clinanthus_incarnatus),Clinanthus_humilis)Clinantheae,(Hymenocallis_glauca,(Hymenocallis_chiapasiana,Ismene_vargasii,Hymenocallis_latifolia,Hymenocallis_tubiflora))Hymenocallideae),(((Stenomesson_aurantiacum,Stenomesson_miniatum),(Pucara_leucantha,Stenomesson_chloranthum),Stenomesson_latifolium,(Eucharis_castelnaeana,Eucharis_formosa)),Eucrosia_dodsonii)Stenomesseae))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr636] END;