#NEXUS [!This data set was downloaded from TreeBASE, a relational database of phylogenetic knowledge. TreeBASE has been supported by the NSF, Harvard University, Yale University, SDSC and UC Davis. Please do not remove this acknowledgment from the Nexus file. Generated on May 11, 2024; 19:54 GMT TreeBASE (cc) 1994-2008 Study reference: Meerow A., & Van der werff H. 2004. Pucara (Amaryllidaceae) reduced to synonomy with Stenomesson on the basis of nuclear and plastid DNA spacer sequences, and a new related species of Stenomesson. Systematic Botany, null. TreeBASE Study URI: http://purl.org/phylo/treebase/phylows/study/TB2:S1130] [ The following blocks are input data for analysis step 2039 ] BEGIN TAXA; TITLE TaxaForAnalysisStep2039; DIMENSIONS NTAX=18; TAXLABELS Chlidanthus_fragrans Clinanthus_humilis Clinanthus_incarnatus Clinanthus_mirabilis Eucharis_castelnaeana Eucharis_formosa Eucrosia_dodsonii Eustephia_darwinii Hymenocallis_chiapasiana Hymenocallis_glauca Hymenocallis_latifolia Hymenocallis_tubiflora Ismene_vargasii Pucara_leucantha Stenomesson_aurantiacum Stenomesson_chloranthum Stenomesson_latifolium Stenomesson_miniatum ; END; BEGIN CHARACTERS; [! TreeBASE Matrix URI: http://purl.org/phylo/treebase/phylows/matrix/TB2:M2401] TITLE GeneCombo; LINK TAXA = TaxaForAnalysisStep2039; DIMENSIONS NCHAR=1406; FORMAT DATATYPE=DNA SYMBOLS= "0 1 G T" MISSING=? GAP= -; MATRIX [ 10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 230 240 250 260 270 280 290 300 310 320 330 340 350 360 370 380 390 400 410 420 430 440 450 460 470 480 490 500 510 520 530 540 550 560 570 580 590 600 610 620 630 640 650 660 670 680 690 700 710 720 730 740 750 760 770 780 790 800 810 820 830 840 850 860 870 880 890 900 910 920 930 940 950 960 970 980 990 1000 1010 1020 1030 1040 1050 1060 1070 1080 1090 1100 1110 1120 1130 1140 1150 1160 1170 1180 1190 1200 1210 1220 1230 1240 1250 1260 1270 1280 1290 1300 1310 1320 1330 1340 1350 1360 1370 1380 1390 1400 ] [ . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . ] Chlidanthus_fragrans ????00TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTT-G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT0G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT-0TTT1TTTT0TTTT1TTTTT001T001T0T00T0T0T0---------------------------------T0----GTT0GTT0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T--------------------------1-T0----T000T------------------0T0T0----------------------------G0000TTTT-T1T1T0T0T--001T0T0T0G0T0GTT0GT0T001T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-01TT0TGT10110100010G0G01T000G11111111111111110010111111111011101111111111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Clinanthus_humilis ????????????1G0TG1G111T01GTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-T---G0TTGG00T0GT0T0GT0TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GT-1TTT-0TTTT-1TTTT0TTTT---------1TTT--------1T0T0T0T0T--------0G------------------------TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T0T0-----------------------1TT0T0T0T000T-0T000-----------T0T0T0----------------------------T0000TTTT-T1T1T0T0T--001---------------------T001T0T1T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTTTT--G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-01TT0TGT10110100010???????????1001101111111110010110000111111101111111001000001100001110111110000000000000000000000000000000000000000000000000000000000000000000 Clinanthus_incarnatus ??????????1111TTG1G111T0-GTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0T0GT0TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TG000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG11G0------------T1T1GTTGG-1TG1T-GTT1TTTT0TTTT-1TTT---------------------------1T0T0T0T0T--------0G------------------------TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0TG-----G001TT0T0T0-----------------------1TT0T0T0T000T-0T000-----------T0T0T0----------------------------T0000TTTT-T1T1T0T0T--001---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111-----TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGG1T100TT0G000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTTTT--G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0GGTTGT0GGG???????????????????????????????????1001101110111010010110000111111101110011001010001100111111100000000000000000000000000000000000000000000000000000000000000000000000 Clinanthus_mirabilis ?????????????????????????GTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0T-----GGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TG000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT1-T0T0T0T------------------1T0T0T0T0T--------0G------------------------TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0-------------------------------------------------------------------------------------------------------------------------------01---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T000000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TG-0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00T00T00T0TT0GTTG00T0TTTTTTTT----G000G0GGTTT-GT1T10GG1TT10TT101G10TGTT1110T0TGG0--GT0G011TTGTTGTTGTG1GT0TT?????????????????????????????????????????????????????????1001101111111110010100000000111001010011001111111111000000000000000000000000000000000000000000000000000000000000000000000000000000 Eucharis_castelnaeana ??????????????????????T0GGTTTTTTT1TT100GTGTGG00011G10GG0110G00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTTTG0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00T-------------T000G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GT000GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T11G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1TGGT-1TTT-0TTTT-1TTT-0TTTTG0TTTT---1TTT0T0------TTTG0TTTT1TTT0T01TTT0TTT0T01TTT0T0T0T001T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T0T0T------------------------------T00-T-0T0T----------------------------------------0T0000T0010TT0T0T1T1T1T0T0T001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT10000000000-T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-01TT0TGT1011??????????????????1010011011110110010110000000001101111111101100000000000100001001000000000000000000000000000000000000000000000000001000010111100000 Eucharis_formosa ??????????????????????????????????TT100GTGTGG00011G10GG0110G00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTTTG0TTGG00T0GT0-----TGG1110T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT000TT00TT000T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GT000GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGGG000TT1T001T1-G001T100TTT0TG0TT110TT0TTG1-G0------------T1T1GTTGG-1TG1TGGT-1TTT-0TTTT-1TTT-0TTTTT0TTTT---11TTT0T----0----------------------------1TTT0T0T0T001T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G0G1TT0T0T0T000---------------------------T0--T-0T0T-----------------------------------------T000-T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT10000000000-T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001TGTG0TT1GTTG0T00------T0TT0GTTG00T0T1TTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GG1-01TT0TGT1?????????????????????1010111101110110010110000011000101111111101100000000000100001001000001000000000000000000000000000000000000000000000000010000011111 Eucrosia_dodsonii ??????????????????????????TGTTGTTGT0G00GTGTGG00011G10GG0110G00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTTTG0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTGG-00------------T1T1GTTGG-1TG1T-G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T0G0T0GTT0GTT--T0-011T0T0T0G000GTT0G1G11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T00TTT1010T1T0GGGTTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT10000000000-T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTGGG11TTTTTTGT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGT-0G00???????????????????????????????????????????????????????????1011111111111000000000000000001101110011000100000000000000000000000000000000000000000000000000000000000000000000000011111000000000 Eustephia_darwinii ????00TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTTGTTT-G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTTT10000G0T100GT0G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT11TT-0TTTT-1TTTT---------0TTTT1TTT0T001T0----------------------------------------------T0----GTT0GTT0T0T0T0----------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T--------------------------1-T0----T000T------------------0T0T0----------------------------G0000TTTT-T0T1T0T0T--001---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G00GTGG1T100TT0T100TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTTTT----00G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-01TT0TGT10110100010G0G0???????1111111111111111111111111111111111111100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000 Hymenocallis_chiapasiana ???????????????????111T0TGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000T000GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000G000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTGGTT0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1TGGTTGGG1TG1T-GTT1TTT-0TTTT--------------------1TTT0T0----T0TTT0T0T0T0T0T0T0T0G-------------------------T0----GTT0T0T0T0T00000----------------------------------T0T0T000GT0T000G0T00GTTTT1T0T0T0T0T0-----G001TT0T0T11TT0TT0T0T1TTTTT0TT0T0T1TT0T0T0T000T-0T0T0-----------0T0T0T0T0T0-----------------------T0000TTTT-T1T1T0T0T--001---------------------T0T0TGG0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T0{0G}1G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----GG00G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T-------------------TGTG0T00TT1TT00TT10TG0G---G????????????????????????????????????????0011100111101100010010000011111101100011000110000000000110000000000001000000111111000000000000000000000000000000000000000000000000 Hymenocallis_glauca ????????????????G1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG0110G00GT0GT0GG0TTGGTTTT10T00T000T000GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GGT1TTT-0TTTT11TTTT0TTTT---------1TTT0T0----0-TTT0T0T0---------0G------------------------GT00---GTT0T0T0T01T0TT0TT000GT0T0T000GT0TGG000G00T000GG00T0T0T0GG0T0T000G-------------------------G0011--------------------------------------------------------------------------------------------------TTTT-T1T1T0T0T--001---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0001111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTTTTT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGGGT100TT0T000TTTG00000110GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTTGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTTTTT-G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-011T0TGT10110100010G0G01T000G10011101111111100000000000011111101111111000010000100000000000100000001111111000000000000000000000000000000000000000000000000000000 Hymenocallis_latifolia ???????????????TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000T000GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGGGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-G{GT}T1TTT-0TTTT-1TTTT0TTTT---------1TTT0T0----T0TTT0T0T----------0G------------------------TT0GTT0GTT0T0T0T0T0000-----------------------------------T0T0T000GT0T000G0T00GTT0T0TT0T0T0T0T0T0TGG001TT0T0T------------------------1TT0T0T0TT0T0-T00T0-----------T0T0TTT0T0T0TTT00TT0TTT00TTTTTT00TTT00-TTTT-T1T1T0T0T--001---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT10000-------T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GGG-011T0TGT1?????????????????????0011101111111110000000000011111101111111000110000100000110000100000001000000000000000001000111000000000000000000000000000000000000 Hymenocallis_tubiflora ????????????????G1G1G1T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000T000GTG000T0TGT1G00TTTTTT-TT--G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTTT0TTTT---------1TTT0T0----T0TTT0T0T--0-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T0T0000TTTT-T1T1T0T0T--001---------------------T0T0T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTG0G0TT10000-------T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTTT---G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TG00TT10TG0G-TTGT0GGG0GGG-011T0TGT1011G?????????????????0011101111111110000000000011111101111111000010000000000000000100000001000000000000000000000000111000000000000000000000000000000000 Ismene_vargasii ????00TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000T000GTG000T0TGT1G00TTTTTT-T---G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT100---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00TGT00TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT10TTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0T0000T0TGTGG00TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT-------------------0T0----T0TTT0T0----------T0G------------------------TT0----GTT0T0T0T0T000GT0T000G-------0G-------------------T0T0T000GT0T000G0T00GTT--1T0T0T0T0T0T0---G001TT0T0T------------------------1TT0T0T0T000T-0T0T0-----------------------------------------T000G0000TTTT-T1T1T0T0T--001---------------------T0T0T0G0G0GTT0GTG11T0TTTTTGGTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT1-0GGGGG00TTTTT1TT0GT0TTT1G0TTTTT0G0TT11000-------T00G000TGG1T1GTTT00000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T1110T00TG0TGT0TTTGGTG00T1100TG10TGGT1T00T001G001T-T00TT1GTTG0T0T------TTTT0GTTG00T0TTTTTTTTTTTT---0G0TTTTTT1T0000GGTTT10TT101G11T00T1-10T0T11GTGTT00111TTGTTGTTGT????????????????????????????????????????????????????????????????0011101111111110010100000011111100100011000000000100000100010000000001000000000000111111111000000000000000000000000000000000000000 Pucara_leucantha ?????0TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTTTG0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT000---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-G1-1TTT-0TTTT-1TTT-0TTTTT0TTTT---1TTT0T0---------------------------------1TTT0T0T0T0T0T00TT0----GTT0T0T0T0--------------------------------------------T00T0T0T00-T-T0-GTT0T0T0T0T000G---------T0T0--0GT0T0T------------------------------0-T0000-----------T0T0T---------------000T0T0T0T0000T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT0000000000--T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTG-G0G00TT1TT00TT10TG0G-TTGT0GGG0GG-G01TT0TG-10110100010G0G0???????1011111111111110010000000011001101111011101100000000000110001001100000000000000000000000000000000000101111111111000000000000000000 Stenomesson_aurantiacum 100T00TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTT-G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT000---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT-0TTTTT0TTTT---1TTT0T0---------------------------------1TTT0T0T0T0T0T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T0T0-------------------------------T000T00T000-----------T0T0T-----------------------0T0000T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT100GG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT100000000000-00G000TGG1T100TT0T100TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GG--01TT0TGT101101????????????????1111111111111110010110000011001101111011101100000000000010000001111110000000000000000000000000000000000000000000000000000000000000 Stenomesson_chloranthum ????00TTTG0G1G0TG1G111T0GGTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTT-G0TTGG00T0GT0-----TGGT010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT000---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT-0TTTTT0TTTT---1TTT0T0---------------------------------1TTT0T0T0T0T0T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T00GT0T00GTT--1T0T0T0T0T0-----G001TT0T0-------------------------1TT0T0T0T000T-0T0T0T0000T0000T--------------------000T0T0T0T0000T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT0000000000--T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GGG0GG-G01TT0TG-101101????????????????1111111111111110010110000011001101111011101100000000000100000001100000000000000000000000000000000000000000000111010100000000000000 Stenomesson_latifolium ???????????????????11-T01GTTTTTTT1TT100GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTT-G0TTGG00T0GT0-----TGGT010T0GT011G00T1-0000T000TGT11G0T0G100GTTG0TTGGTT00TT000---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0TTG1G0TTG1G0T1T1GTTGG-1TG1T-GT-1TTT-0TTTT-1TTT-0TTTTT0TTT1---1TTT0T0---------------------------------1TTT0T0T0T0T0T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T0-------------------------1TT0T0T0T000T-0T0T----------------------------------------0T0000T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TGT1T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1T0TTTTTGG0TT1000000000--T00G000TGG1T100TT0T000TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTGTG0G00TT1TT00TT10TG0G-TTGT0GT1011G101TT0TG-1011??????????????????1111111111011110010110000011001101111011101100000000000100001001100000000000000000000000000000000100000000000101111000000000000000 Stenomesson_miniatum ??????????????????G11-1TGGTTTTTTT1TT10-GTGTGG00011G10GG011GG00GT0GT0GG0TTGGTTTT10T00T000----GTG000T0TGT1G00TTTTTT-TTT-G0TTGG00T0GT0-----TGGG010T0GT011G00T1G0000T000TGT11G0T0G100GTTG0TTGGTT00TT000---------T00-G000T000TGGG00TT0G101T1G0TTT0GTTGGT01101110011G00T1000TT100T1GTTT01T10TTT00-----TG0GT100TTTT100GTT1001100TT10TT1TTTTTT-10000G0T100GT1G0TG00T00G00TTG-TG0GT00GTG00GTGTGTTT1GTTT1T1T0T10TT0T0G0000T0110T1T0G01T0G0TT000T1TGTG000TT1T001T1-G001T100TTT0TG0TT1-0TT0TTG1-G0------------T1T1GTTGG-1TG1T-GTT1TTT-0TTTT-1TTT-0TTTTT0TTTT---1TTT0T0---------------------------------1TTT0T0T0T0T0T00TT0----GTT0T0T0T0--------------------------------------------T000GT0T000G0T00GTT--1T0T0T0T0T0-----G001TT0T0-------------------------------------T-0T000-----------T0T0T-----------------------0T0000T0000TTTT-T1T1T0T0T--001T0G0T0G0T0GTT0GT0T001T001T0G0T0GTT0GTG11T0TTTTTGTTTT0T01111TT111TTT10TGG0TG00TT0TG11T0TTTT1010T1T0GG0TTT010T0T010010T0T0T101TGT100GGGGG00TTTTT1TT0GT0TTT1G0TTTTTGG0TT100000000000T00G000TGG1T100TT0T100TTTG000001G0GG0TTGGGTTG1G110T0T0T0T1000G0GT0T0100T00TG0TGT0TTTGGTG00T1000TG10TGGT1T00T001G001T-T00TT1GTTG0T00------T0TT0GTTG00T0TTTTTTTT----G000G0TTTTT-GT1000GGTTT10TT101G11T00T1-10T0T1G0--GT0G011TTGTTGTTG-G0G00TT1TT00TT10-G0G-TTGT0GGG0GGG-01TT0TGT101101????????????????1111111111111110010110000011001101111111101100000000000110000001101000000000000000000000000000000111110000000000000000000000000000 ; END; [ The following blocks are output data for analysis step 2039 ] BEGIN TREES; TITLE Tb6814; LINK TAXA = TaxaForAnalysisStep2039; TREE Fig._4 = [&R] (Eustephia_darwinii,(Chlidanthus_fragrans,(((Clinanthus_mirabilis,(Clinanthus_incarnatus,Clinanthus_humilis))Clinantheae,((((Hymenocallis_glauca,Hymenocallis_tubiflora),Hymenocallis_latifolia),Hymenocallis_chiapasiana),Ismene_vargasii)Hymenocallideae),((((Stenomesson_aurantiacum,Stenomesson_miniatum),((Pucara_leucantha,Stenomesson_chloranthum),Stenomesson_latifolium)),(Eucharis_castelnaeana,Eucharis_formosa)),Eucrosia_dodsonii)Stenomesseae))); [! TreeBASE tree URI: http://purl.org/phylo/treebase/phylows/tree/TB2:Tr4366] END;